data_2L65 # _entry.id 2L65 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2L65 RCSB RCSB102005 WWPDB D_1000102005 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2011-03-02 _pdbx_database_PDB_obs_spr.pdb_id 2L65 _pdbx_database_PDB_obs_spr.replace_pdb_id 2GKC _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 1ZXF PDB 'Solution Structure of CalC' unspecified 2PIK PDB 'Solution Structure of complex of DNA and Calicheamicin-Gamma' unspecified GO.79751 TargetDB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L65 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-11-15 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Singh, S.' 1 'Markley, J.L.' 2 'Thorson, J.S.' 3 'Center for Eukaryotic Structural Genomics (CESG)' 4 # _citation.id primary _citation.title 'Structural insight into the self-sacrifice mechanism of enediyne resistance.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 1 _citation.page_first 451 _citation.page_last 460 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17168523 _citation.pdbx_database_id_DOI 10.1021/cb6002898 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Singh, S.' 1 ? primary 'Hager, M.H.' 2 ? primary 'Zhang, C.' 3 ? primary 'Griffith, B.R.' 4 ? primary 'Lee, M.S.' 5 ? primary 'Hallenga, K.' 6 ? primary 'Markley, J.L.' 7 ? primary 'Thorson, J.S.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man CalC 17915.072 1 ? ? 'sequence database residues 27-181' ? 2 branched syn '2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose-(1-2)-4-amino-4,6-dideoxy-beta-D-glucopyranose' 320.382 1 ? ? ? ? 3 non-polymer syn 2,6-dideoxy-4-thio-beta-D-allopyranose 164.223 1 ? ? ? ? 4 non-polymer syn '4-HYDROXY-5-IODO-2,3-DIMETHOXY-6-METHYLBENZOIC ACID' 338.096 1 ? ? ? ? 5 non-polymer syn 3-O-methyl-alpha-L-rhamnopyranose 178.183 1 ? ? ? ? 6 non-polymer syn '[1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER' 407.527 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NYDPFVRHSVTVKADRKTAFKTFLEGFPEWWPNNFRTTKVGAPLGVDKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLVIG WRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEEGAKK ; _entity_poly.pdbx_seq_one_letter_code_can ;NYDPFVRHSVTVKADRKTAFKTFLEGFPEWWPNNFRTTKVGAPLGVDKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLVIG WRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEEGAKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier GO.79751 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 TYR n 1 3 ASP n 1 4 PRO n 1 5 PHE n 1 6 VAL n 1 7 ARG n 1 8 HIS n 1 9 SER n 1 10 VAL n 1 11 THR n 1 12 VAL n 1 13 LYS n 1 14 ALA n 1 15 ASP n 1 16 ARG n 1 17 LYS n 1 18 THR n 1 19 ALA n 1 20 PHE n 1 21 LYS n 1 22 THR n 1 23 PHE n 1 24 LEU n 1 25 GLU n 1 26 GLY n 1 27 PHE n 1 28 PRO n 1 29 GLU n 1 30 TRP n 1 31 TRP n 1 32 PRO n 1 33 ASN n 1 34 ASN n 1 35 PHE n 1 36 ARG n 1 37 THR n 1 38 THR n 1 39 LYS n 1 40 VAL n 1 41 GLY n 1 42 ALA n 1 43 PRO n 1 44 LEU n 1 45 GLY n 1 46 VAL n 1 47 ASP n 1 48 LYS n 1 49 LYS n 1 50 GLY n 1 51 GLY n 1 52 ARG n 1 53 TRP n 1 54 TYR n 1 55 GLU n 1 56 ILE n 1 57 ASP n 1 58 GLU n 1 59 GLN n 1 60 GLY n 1 61 GLU n 1 62 GLU n 1 63 HIS n 1 64 THR n 1 65 PHE n 1 66 GLY n 1 67 LEU n 1 68 ILE n 1 69 ARG n 1 70 LYS n 1 71 VAL n 1 72 ASP n 1 73 GLU n 1 74 PRO n 1 75 ASP n 1 76 THR n 1 77 LEU n 1 78 VAL n 1 79 ILE n 1 80 GLY n 1 81 TRP n 1 82 ARG n 1 83 LEU n 1 84 ASN n 1 85 GLY n 1 86 PHE n 1 87 GLY n 1 88 ARG n 1 89 ILE n 1 90 ASP n 1 91 PRO n 1 92 ASP n 1 93 ASN n 1 94 SER n 1 95 SER n 1 96 GLU n 1 97 PHE n 1 98 THR n 1 99 VAL n 1 100 THR n 1 101 PHE n 1 102 VAL n 1 103 ALA n 1 104 ASP n 1 105 GLY n 1 106 GLN n 1 107 LYS n 1 108 LYS n 1 109 THR n 1 110 ARG n 1 111 VAL n 1 112 ASP n 1 113 VAL n 1 114 GLU n 1 115 HIS n 1 116 THR n 1 117 HIS n 1 118 PHE n 1 119 ASP n 1 120 ARG n 1 121 MET n 1 122 GLY n 1 123 THR n 1 124 LYS n 1 125 HIS n 1 126 ALA n 1 127 LYS n 1 128 ARG n 1 129 VAL n 1 130 ARG n 1 131 ASN n 1 132 GLY n 1 133 MET n 1 134 ASP n 1 135 LYS n 1 136 GLY n 1 137 TRP n 1 138 PRO n 1 139 THR n 1 140 ILE n 1 141 LEU n 1 142 GLN n 1 143 SER n 1 144 PHE n 1 145 GLN n 1 146 ASP n 1 147 LYS n 1 148 ILE n 1 149 ASP n 1 150 GLU n 1 151 GLU n 1 152 GLY n 1 153 ALA n 1 154 LYS n 1 155 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene calC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Micromonospora echinospora' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1877 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET21a _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8KNF0_MICEC _struct_ref.pdbx_db_accession Q8KNF0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NYDPFVRHSVTVKADRKTAFKTFLEGFPEWWPNNFRTTKVGAPLGVDKKGGRWYEIDEQGEEHTFGLIRKVDEPDTLVIG WRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEEGAKK ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L65 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 155 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8KNF0 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 155 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DAG 'D-saccharide, beta linking' . 4-amino-4,6-dideoxy-beta-D-glucopyranose ? 'C6 H13 N O4' 163.172 DSR 'D-saccharide, beta linking' . 2,6-dideoxy-4-thio-beta-D-allopyranose ? 'C6 H12 O3 S' 164.223 EMP 'L-saccharide, alpha linking' . '2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose' ? 'C8 H17 N O3' 175.225 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIB non-polymer . '4-HYDROXY-5-IODO-2,3-DIMETHOXY-6-METHYLBENZOIC ACID' ? 'C10 H11 I O5' 338.096 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MRP 'L-saccharide, alpha linking' n 3-O-methyl-alpha-L-rhamnopyranose ? 'C7 H14 O5' 178.183 MTC non-polymer . '[1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER' ? 'C18 H17 N O4 S3' 407.527 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.type '2D 1H-15N HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 150mM _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.5 mM [U-100% 15N] CalC, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2L65 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;THE STRUCTURE OF THE COMPLEX WAS DETERMINED WITH HADDOCK USING 26 AMBIGUOUS INTERACTION RESTRAINTS DERIVED FROM NMR CHEMICAL SHIFT PERTURBATION DATA AND MUTAGENESIS DATA. THE CHEMICAL SHIFT PERTURBATION DATA WERE OBTAINED BY ANALYSIS OF 1H-15N HSQC SPECTRA RECORDED WITH INCREASING RNA CONCENTRATIONS. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2L65 _pdbx_nmr_details.text 'Chemical Shift Perturbation' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 4 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L65 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L65 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin' 'structure solution' HADDOCK 2.1 1 'Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin' refinement HADDOCK 2.1 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2L65 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L65 _struct.title 'HADDOCK calculated model of the complex of the resistance protein CalC and Calicheamicin-Gamma' _struct.pdbx_descriptor CalC _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L65 _struct_keywords.pdbx_keywords 'Structural genomics, Unknown function' _struct_keywords.text ;Resistance Protein, Structural Genomics, PSI-1, Protein Structure Initiative, Center for Eukaryotic Structural Genomics, CESG, Unknown function ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 15 ? GLU A 25 ? ASP A 15 GLU A 25 1 ? 11 HELX_P HELX_P2 2 THR A 123 ? ARG A 130 ? THR A 123 ARG A 130 1 ? 8 HELX_P HELX_P3 3 GLY A 132 ? LYS A 135 ? GLY A 132 LYS A 135 5 ? 4 HELX_P HELX_P4 4 GLY A 136 ? GLU A 151 ? GLY A 136 GLU A 151 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? C DSR . S4 ? ? ? 1_555 D HIB . C7 ? ? A DSR 625 A HIB 626 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale2 covale one ? C DSR . O1 ? ? ? 1_555 B DAG . N4 ? ? A DSR 625 B DAG 1 1_555 ? ? ? ? ? ? ? 1.283 ? ? covale3 covale both ? D HIB . C2 ? ? ? 1_555 E MRP . O1 ? ? A HIB 626 A MRP 627 1_555 ? ? ? ? ? ? ? 1.631 ? ? covale4 covale one ? F MTC . C1 ? ? ? 1_555 B DAG . O1 ? ? A MTC 629 B DAG 1 1_555 ? ? ? ? ? ? ? 1.941 ? ? covale5 covale both ? B DAG . O2 ? ? ? 1_555 B EMP . C1 ? ? B DAG 1 B EMP 2 1_555 ? ? ? ? ? ? ? 1.349 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 9 ? VAL A 12 ? SER A 9 VAL A 12 A 2 LYS A 108 ? GLU A 114 ? LYS A 108 GLU A 114 A 3 SER A 95 ? ASP A 104 ? SER A 95 ASP A 104 A 4 THR A 76 ? TRP A 81 ? THR A 76 TRP A 81 A 5 GLY A 66 ? ASP A 72 ? GLY A 66 ASP A 72 B 1 GLY A 45 ? ASP A 47 ? GLY A 45 ASP A 47 B 2 ARG A 52 ? TYR A 54 ? ARG A 52 TYR A 54 C 1 ILE A 56 ? ASP A 57 ? ILE A 56 ASP A 57 C 2 GLY A 60 ? GLU A 61 ? GLY A 60 GLU A 61 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 12 ? N VAL A 12 O THR A 109 ? O THR A 109 A 2 3 O ARG A 110 ? O ARG A 110 N VAL A 102 ? N VAL A 102 A 3 4 O VAL A 99 ? O VAL A 99 N LEU A 77 ? N LEU A 77 A 4 5 O VAL A 78 ? O VAL A 78 N ARG A 69 ? N ARG A 69 B 1 2 N ASP A 47 ? N ASP A 47 O ARG A 52 ? O ARG A 52 C 1 2 N ASP A 57 ? N ASP A 57 O GLY A 60 ? O GLY A 60 # _atom_sites.entry_id 2L65 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H I N O S # loop_ _database_PDB_caveat.text 'EMP B 2 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 TRP 30 30 30 TRP TRP A . n A 1 31 TRP 31 31 31 TRP TRP A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 TRP 81 81 81 TRP TRP A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 HIS 115 115 115 HIS HIS A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 MET 121 121 121 MET MET A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 HIS 125 125 125 HIS HIS A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 MET 133 133 133 MET MET A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 TRP 137 137 137 TRP TRP A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 GLN 142 142 142 GLN GLN A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 GLN 145 145 145 GLN GLN A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 ASP 149 149 149 ASP ASP A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 LYS 155 155 155 LYS LYS A . n # _pdbx_SG_project.full_name_of_center 'Center for Eukaryotic Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center CESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DSR 1 625 625 DSR DSR A . D 4 HIB 1 626 626 HIB HIB A . E 5 MRP 1 627 627 MRP MRP A . F 6 MTC 1 629 629 MTC MTC A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' database_PDB_caveat 4 3 'Structure model' entity 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_nonpoly_scheme 13 3 'Structure model' pdbx_struct_assembly_gen 14 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 15 3 'Structure model' pdbx_validate_chiral 16 3 'Structure model' pdbx_validate_close_contact 17 3 'Structure model' struct_asym 18 3 'Structure model' struct_conn 19 3 'Structure model' struct_site 20 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.Cartn_x' 2 3 'Structure model' '_atom_site.Cartn_y' 3 3 'Structure model' '_atom_site.Cartn_z' 4 3 'Structure model' '_atom_site.auth_asym_id' 5 3 'Structure model' '_atom_site.auth_atom_id' 6 3 'Structure model' '_atom_site.auth_comp_id' 7 3 'Structure model' '_atom_site.auth_seq_id' 8 3 'Structure model' '_atom_site.label_asym_id' 9 3 'Structure model' '_atom_site.label_atom_id' 10 3 'Structure model' '_atom_site.label_comp_id' 11 3 'Structure model' '_atom_site.label_entity_id' 12 3 'Structure model' '_atom_site.type_symbol' 13 3 'Structure model' '_chem_comp.mon_nstd_flag' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_nmr_exptl_sample.component CalC-1 _pdbx_nmr_exptl_sample.concentration 0.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 15N]' _pdbx_nmr_exptl_sample.solution_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ3 A LYS 147 ? ? OE2 A GLU 151 ? ? 1.57 2 1 OD1 A ASP 15 ? ? HG1 A THR 18 ? ? 1.58 3 1 HZ3 A LYS 13 ? ? OD1 A ASP 149 ? ? 1.58 4 1 HZ3 A LYS 70 ? ? OD1 A ASP 72 ? ? 1.59 5 2 N4 B DAG 1 ? ? O1 A DSR 630 ? ? 1.28 6 2 HZ3 A LYS 70 ? ? OD2 A ASP 72 ? ? 1.59 7 2 HZ1 A LYS 147 ? ? OE2 A GLU 151 ? ? 1.59 8 2 HH21 A ARG 69 ? ? OE1 A GLU 96 ? ? 1.60 9 2 C2 A HIB 631 ? ? O1 A MRP 632 ? ? 1.63 10 2 O1 B DAG 1 ? ? C1 A MTC 634 ? ? 1.94 11 2 S4 A DSR 630 ? ? C7 A HIB 631 ? ? 2.03 12 2 O A GLY 85 ? ? O3 A DSR 630 ? ? 2.08 13 3 N4 B DAG 1 ? ? O1 A DSR 635 ? ? 1.28 14 3 HZ3 A LYS 70 ? ? OD2 A ASP 72 ? ? 1.56 15 3 OD1 A ASP 47 ? ? HZ3 A LYS 49 ? ? 1.56 16 3 OE2 A GLU 25 ? ? HZ3 A LYS 48 ? ? 1.57 17 3 C2 A HIB 636 ? ? O1 A MRP 637 ? ? 1.63 18 3 O1 B DAG 1 ? ? C1 A MTC 639 ? ? 1.94 19 3 S4 A DSR 635 ? ? C7 A HIB 636 ? ? 2.03 20 4 N4 B DAG 1 ? ? O1 A DSR 640 ? ? 1.28 21 4 OE2 A GLU 29 ? ? HZ1 A LYS 147 ? ? 1.55 22 4 OD2 A ASP 47 ? ? HZ1 A LYS 49 ? ? 1.59 23 4 C2 A HIB 641 ? ? O1 A MRP 642 ? ? 1.63 24 4 O1 B DAG 1 ? ? C1 A MTC 644 ? ? 1.94 25 4 S4 A DSR 640 ? ? C7 A HIB 641 ? ? 2.03 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 2 ? ? 67.20 -51.49 2 1 PHE A 5 ? ? -178.67 140.60 3 1 ALA A 14 ? ? -130.46 -152.98 4 1 GLU A 25 ? ? -139.93 -55.44 5 1 PRO A 28 ? ? -79.92 22.43 6 1 TRP A 30 ? ? -87.08 -151.83 7 1 TRP A 31 ? ? -172.77 -51.17 8 1 PRO A 32 ? ? -18.82 -63.26 9 1 ASN A 33 ? ? -148.11 36.66 10 1 THR A 38 ? ? 72.03 -65.43 11 1 PRO A 43 ? ? -72.08 43.44 12 1 LEU A 44 ? ? -165.39 -91.23 13 1 GLU A 62 ? ? -96.70 -95.35 14 1 GLU A 73 ? ? 56.11 177.78 15 1 PRO A 74 ? ? -71.31 47.36 16 1 ASP A 75 ? ? -135.82 -43.84 17 1 ARG A 82 ? ? -100.79 -164.76 18 1 ASN A 84 ? ? -77.54 -160.39 19 1 PHE A 86 ? ? -93.85 -85.92 20 1 PRO A 91 ? ? -65.88 89.89 21 1 ASN A 93 ? ? -162.12 -70.57 22 1 SER A 94 ? ? 70.77 161.61 23 1 GLN A 106 ? ? 68.31 -16.56 24 1 THR A 116 ? ? -160.14 91.89 25 1 HIS A 117 ? ? 179.01 -62.08 26 1 ARG A 120 ? ? -78.54 48.81 27 1 MET A 121 ? ? -146.25 18.22 28 1 THR A 123 ? ? 55.24 -91.57 29 1 LYS A 135 ? ? -80.90 38.76 30 1 GLU A 151 ? ? -79.63 26.79 31 2 ASP A 3 ? ? -165.65 -63.64 32 2 PHE A 5 ? ? -174.26 141.60 33 2 ALA A 14 ? ? -123.26 -163.03 34 2 GLU A 25 ? ? -155.64 -45.40 35 2 TRP A 31 ? ? -169.99 -50.62 36 2 PRO A 32 ? ? -26.28 -55.41 37 2 ARG A 36 ? ? -119.96 -160.18 38 2 THR A 38 ? ? 67.66 -65.36 39 2 VAL A 40 ? ? -173.85 89.10 40 2 LEU A 44 ? ? -95.29 -89.00 41 2 GLU A 62 ? ? -118.29 -146.35 42 2 ASP A 72 ? ? -118.54 78.93 43 2 GLU A 73 ? ? 55.40 178.70 44 2 PRO A 74 ? ? -71.55 48.69 45 2 ASP A 75 ? ? -134.96 -55.52 46 2 ARG A 82 ? ? -104.87 -168.76 47 2 PHE A 86 ? ? -104.98 -85.83 48 2 PRO A 91 ? ? -69.37 60.05 49 2 ASN A 93 ? ? -164.41 -69.20 50 2 SER A 94 ? ? 66.14 90.78 51 2 GLN A 106 ? ? 67.47 -3.15 52 2 THR A 116 ? ? -157.57 77.87 53 2 HIS A 117 ? ? -172.41 -67.39 54 2 ARG A 120 ? ? -91.65 32.20 55 2 THR A 123 ? ? 53.41 -87.79 56 3 TYR A 2 ? ? 63.63 -50.49 57 3 ARG A 7 ? ? -171.00 104.63 58 3 LYS A 13 ? ? -98.74 57.95 59 3 ALA A 14 ? ? -147.91 -83.26 60 3 TRP A 31 ? ? -144.85 46.85 61 3 ASN A 33 ? ? -157.78 -32.30 62 3 THR A 38 ? ? 78.51 -62.80 63 3 VAL A 40 ? ? -163.21 91.04 64 3 LEU A 44 ? ? -98.74 -91.82 65 3 GLU A 62 ? ? -97.45 -144.46 66 3 GLU A 73 ? ? 55.04 -179.01 67 3 PRO A 74 ? ? -69.29 33.65 68 3 PHE A 86 ? ? -83.29 -84.27 69 3 PRO A 91 ? ? -57.89 104.41 70 3 ASN A 93 ? ? -68.71 -77.71 71 3 SER A 94 ? ? 69.07 161.57 72 3 LYS A 107 ? ? -140.95 -51.95 73 3 THR A 116 ? ? -156.71 86.07 74 3 HIS A 117 ? ? -177.02 -64.63 75 3 THR A 123 ? ? 56.36 -92.17 76 4 TYR A 2 ? ? 47.84 -107.18 77 4 PHE A 5 ? ? 178.66 153.33 78 4 ALA A 14 ? ? -172.54 -82.51 79 4 LEU A 24 ? ? -128.26 -55.86 80 4 PRO A 28 ? ? -75.74 27.85 81 4 TRP A 31 ? ? -146.07 -58.39 82 4 ASN A 33 ? ? -170.00 -67.85 83 4 THR A 38 ? ? 75.46 -47.35 84 4 VAL A 40 ? ? -161.81 104.19 85 4 PRO A 43 ? ? -74.74 45.58 86 4 LEU A 44 ? ? -160.69 -86.85 87 4 GLU A 62 ? ? -93.87 -135.26 88 4 GLU A 73 ? ? 54.55 178.29 89 4 PRO A 74 ? ? -72.17 49.49 90 4 ASP A 75 ? ? -137.66 -50.53 91 4 PHE A 86 ? ? -101.66 -86.38 92 4 ASN A 93 ? ? -152.29 -63.47 93 4 SER A 94 ? ? 62.98 170.76 94 4 GLN A 106 ? ? 72.28 -42.94 95 4 HIS A 115 ? ? -175.09 149.46 96 4 HIS A 117 ? ? -175.82 -59.07 97 4 MET A 121 ? ? -167.81 27.32 98 4 THR A 123 ? ? 53.30 -101.28 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 2 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id EMP _pdbx_validate_chiral.auth_seq_id 2 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 2 N 1 A HIB 631 ? O2 ? D HIB 1 O2 2 2 N 1 A HIB 631 ? O8 ? D HIB 1 O8 3 3 N 1 A HIB 636 ? O2 ? D HIB 1 O2 4 3 N 1 A HIB 636 ? O8 ? D HIB 1 O8 5 4 N 1 A HIB 641 ? O2 ? D HIB 1 O2 6 4 N 1 A HIB 641 ? O8 ? D HIB 1 O8 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 DAG 1 B DAG 1 D DAG 621 n B 2 EMP 2 B EMP 2 D EMP 628 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-6-deoxy-Glcp4N DSR 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Allp4SH MRP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Rhap3OMe # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,2,1/[a2122m-1b_1-5_4*N][ad21h-1a_1-5_3*OC_4*NCC]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-6-deoxy-Glcp4N]{[(2+1)][a-L-2-deoxy-Xylp3Me4N]{[(4+1)][ethyl]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 EMP _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 DAG _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 DAG 1 n 2 EMP 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2,6-dideoxy-4-thio-beta-D-allopyranose DSR 4 '4-HYDROXY-5-IODO-2,3-DIMETHOXY-6-METHYLBENZOIC ACID' HIB 5 3-O-methyl-alpha-L-rhamnopyranose MRP 6 '[1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER' MTC #