HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-NOV-10 2L65 TITLE HADDOCK CALCULATED MODEL OF THE COMPLEX OF THE RESISTANCE PROTEIN CALC TITLE 2 AND CALICHEAMICIN-GAMMA CAVEAT 2L65 EMP B 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 27-181; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROMONOSPORA ECHINOSPORA; SOURCE 3 ORGANISM_TAXID: 1877; SOURCE 4 GENE: CALC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS RESISTANCE PROTEIN, STRUCTURAL GENOMICS, PSI-1, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 4 AUTHOR S.SINGH,J.L.MARKLEY,J.S.THORSON,CENTER FOR EUKARYOTIC STRUCTURAL AUTHOR 2 GENOMICS (CESG) REVDAT 3 29-JUL-20 2L65 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 23-MAR-11 2L65 1 LINK REVDAT 1 02-MAR-11 2L65 0 SPRSDE 02-MAR-11 2L65 2GKC JRNL AUTH S.SINGH,M.H.HAGER,C.ZHANG,B.R.GRIFFITH,M.S.LEE,K.HALLENGA, JRNL AUTH 2 J.L.MARKLEY,J.S.THORSON JRNL TITL STRUCTURAL INSIGHT INTO THE SELF-SACRIFICE MECHANISM OF JRNL TITL 2 ENEDIYNE RESISTANCE. JRNL REF ACS CHEM.BIOL. V. 1 451 2006 JRNL REFN ISSN 1554-8929 JRNL PMID 17168523 JRNL DOI 10.1021/CB6002898 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK 2.1, HADDOCK 2.1 REMARK 3 AUTHORS : CYRIL DOMINGUEZ, ROLF BOELENS AND ALEXANDRE M.J.J. REMARK 3 BONVIN (HADDOCK), CYRIL DOMINGUEZ, ROLF BOELENS REMARK 3 AND ALEXANDRE M.J.J. BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE OF THE COMPLEX WAS REMARK 3 DETERMINED WITH HADDOCK USING 26 AMBIGUOUS INTERACTION REMARK 3 RESTRAINTS DERIVED FROM NMR CHEMICAL SHIFT PERTURBATION DATA AND REMARK 3 MUTAGENESIS DATA. THE CHEMICAL SHIFT PERTURBATION DATA WERE REMARK 3 OBTAINED BY ANALYSIS OF 1H-15N HSQC SPECTRA RECORDED WITH REMARK 3 INCREASING RNA CONCENTRATIONS. REMARK 4 REMARK 4 2L65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000102005. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 150MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] CALC, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 4 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: CHEMICAL SHIFT PERTURBATION REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 147 OE2 GLU A 151 1.57 REMARK 500 OD1 ASP A 15 HG1 THR A 18 1.58 REMARK 500 HZ3 LYS A 13 OD1 ASP A 149 1.58 REMARK 500 HZ3 LYS A 70 OD1 ASP A 72 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 2 -51.49 67.20 REMARK 500 1 PHE A 5 140.60 -178.67 REMARK 500 1 ALA A 14 -152.98 -130.46 REMARK 500 1 GLU A 25 -55.44 -139.93 REMARK 500 1 PRO A 28 22.43 -79.92 REMARK 500 1 TRP A 30 -151.83 -87.08 REMARK 500 1 TRP A 31 -51.17 -172.77 REMARK 500 1 PRO A 32 -63.26 -18.82 REMARK 500 1 ASN A 33 36.66 -148.11 REMARK 500 1 THR A 38 -65.43 72.03 REMARK 500 1 PRO A 43 43.44 -72.08 REMARK 500 1 LEU A 44 -91.23 -165.39 REMARK 500 1 GLU A 62 -95.35 -96.70 REMARK 500 1 GLU A 73 177.78 56.11 REMARK 500 1 PRO A 74 47.36 -71.31 REMARK 500 1 ASP A 75 -43.84 -135.82 REMARK 500 1 ARG A 82 -164.76 -100.79 REMARK 500 1 ASN A 84 -160.39 -77.54 REMARK 500 1 PHE A 86 -85.92 -93.85 REMARK 500 1 PRO A 91 89.89 -65.88 REMARK 500 1 ASN A 93 -70.57 -162.12 REMARK 500 1 SER A 94 161.61 70.77 REMARK 500 1 GLN A 106 -16.56 68.31 REMARK 500 1 THR A 116 91.89 -160.14 REMARK 500 1 HIS A 117 -62.08 179.01 REMARK 500 1 ARG A 120 48.81 -78.54 REMARK 500 1 MET A 121 18.22 -146.25 REMARK 500 1 THR A 123 -91.57 55.24 REMARK 500 1 LYS A 135 38.76 -80.90 REMARK 500 1 GLU A 151 26.79 -79.63 REMARK 500 2 ASP A 3 -63.64 -165.65 REMARK 500 2 PHE A 5 141.60 -174.26 REMARK 500 2 ALA A 14 -163.03 -123.26 REMARK 500 2 GLU A 25 -45.40 -155.64 REMARK 500 2 TRP A 31 -50.62 -169.99 REMARK 500 2 PRO A 32 -55.41 -26.28 REMARK 500 2 ARG A 36 -160.18 -119.96 REMARK 500 2 THR A 38 -65.36 67.66 REMARK 500 2 VAL A 40 89.10 -173.85 REMARK 500 2 LEU A 44 -89.00 -95.29 REMARK 500 2 GLU A 62 -146.35 -118.29 REMARK 500 2 ASP A 72 78.93 -118.54 REMARK 500 2 GLU A 73 178.70 55.40 REMARK 500 2 PRO A 74 48.69 -71.55 REMARK 500 2 ASP A 75 -55.52 -134.96 REMARK 500 2 ARG A 82 -168.76 -104.87 REMARK 500 2 PHE A 86 -85.83 -104.98 REMARK 500 2 PRO A 91 60.05 -69.37 REMARK 500 2 ASN A 93 -69.20 -164.41 REMARK 500 2 SER A 94 90.78 66.14 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2 HIB A 631 REMARK 610 3 HIB A 636 REMARK 610 4 HIB A 641 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZXF RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CALC REMARK 900 RELATED ID: 2PIK RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF COMPLEX OF DNA AND CALICHEAMICIN-GAMMA REMARK 900 RELATED ID: GO.79751 RELATED DB: TARGETDB DBREF 2L65 A 1 155 UNP Q8KNF0 Q8KNF0_MICEC 27 181 SEQRES 1 A 155 ASN TYR ASP PRO PHE VAL ARG HIS SER VAL THR VAL LYS SEQRES 2 A 155 ALA ASP ARG LYS THR ALA PHE LYS THR PHE LEU GLU GLY SEQRES 3 A 155 PHE PRO GLU TRP TRP PRO ASN ASN PHE ARG THR THR LYS SEQRES 4 A 155 VAL GLY ALA PRO LEU GLY VAL ASP LYS LYS GLY GLY ARG SEQRES 5 A 155 TRP TYR GLU ILE ASP GLU GLN GLY GLU GLU HIS THR PHE SEQRES 6 A 155 GLY LEU ILE ARG LYS VAL ASP GLU PRO ASP THR LEU VAL SEQRES 7 A 155 ILE GLY TRP ARG LEU ASN GLY PHE GLY ARG ILE ASP PRO SEQRES 8 A 155 ASP ASN SER SER GLU PHE THR VAL THR PHE VAL ALA ASP SEQRES 9 A 155 GLY GLN LYS LYS THR ARG VAL ASP VAL GLU HIS THR HIS SEQRES 10 A 155 PHE ASP ARG MET GLY THR LYS HIS ALA LYS ARG VAL ARG SEQRES 11 A 155 ASN GLY MET ASP LYS GLY TRP PRO THR ILE LEU GLN SER SEQRES 12 A 155 PHE GLN ASP LYS ILE ASP GLU GLU GLY ALA LYS LYS HET DAG B 1 12 HET EMP B 2 13 HET DSR A 625 11 HET HIB A 626 14 HET MRP A 627 14 HET MTC A 629 28 HETNAM DAG 4-AMINO-4,6-DIDEOXY-BETA-D-GLUCOPYRANOSE HETNAM EMP 2,4-DIDEOXY-4-(ETHYLAMINO)-3-O-METHYL-ALPHA-L-THREO- HETNAM 2 EMP PENTOPYRANOSE HETNAM DSR 2,6-DIDEOXY-4-THIO-BETA-D-ALLOPYRANOSE HETNAM HIB 4-HYDROXY-5-IODO-2,3-DIMETHOXY-6-METHYLBENZOIC ACID HETNAM MRP 3-O-METHYL-ALPHA-L-RHAMNOPYRANOSE HETNAM MTC [1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO-ETHYLIDENE)- HETNAM 2 MTC BICYCLO[7.3.1]TRIDECA-4,9-DIENE-2,6-DIYN-10-YL]- HETNAM 3 MTC CARBAMIC ACID METHYL ESTER FORMUL 2 DAG C6 H13 N O4 FORMUL 2 EMP C8 H17 N O3 FORMUL 3 DSR C6 H12 O3 S FORMUL 4 HIB C10 H11 I O5 FORMUL 5 MRP C7 H14 O5 FORMUL 6 MTC C18 H17 N O4 S3 HELIX 1 1 ASP A 15 GLU A 25 1 11 HELIX 2 2 THR A 123 ARG A 130 1 8 HELIX 3 3 GLY A 132 LYS A 135 5 4 HELIX 4 4 GLY A 136 GLU A 151 1 16 SHEET 1 A 5 SER A 9 VAL A 12 0 SHEET 2 A 5 LYS A 108 GLU A 114 -1 O THR A 109 N VAL A 12 SHEET 3 A 5 SER A 95 ASP A 104 -1 N VAL A 102 O ARG A 110 SHEET 4 A 5 THR A 76 TRP A 81 -1 N LEU A 77 O VAL A 99 SHEET 5 A 5 GLY A 66 ASP A 72 -1 N ARG A 69 O VAL A 78 SHEET 1 B 2 GLY A 45 ASP A 47 0 SHEET 2 B 2 ARG A 52 TYR A 54 -1 O ARG A 52 N ASP A 47 SHEET 1 C 2 ILE A 56 ASP A 57 0 SHEET 2 C 2 GLY A 60 GLU A 61 -1 O GLY A 60 N ASP A 57 LINK S4 DSR A 625 C7 HIB A 626 1555 1555 2.03 LINK O1 DSR A 625 N4 DAG B 1 1555 1555 1.28 LINK C2 HIB A 626 O1 MRP A 627 1555 1555 1.63 LINK C1 MTC A 629 O1 DAG B 1 1555 1555 1.94 LINK O2 DAG B 1 C1 EMP B 2 1555 1555 1.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1