data_2L6A # _entry.id 2L6A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2L6A pdb_00002l6a 10.2210/pdb2l6a/pdb RCSB RCSB102010 ? ? BMRB 17305 ? ? WWPDB D_1000102010 ? ? # _pdbx_database_related.db_id 17305 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L6A _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-11-17 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pinheiro, A.S.' 1 'Peti, W.' 2 # _citation.id primary _citation.title 'The NLRP12 pyrin domain: structure, dynamics, and functional insights.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 413 _citation.page_first 790 _citation.page_last 803 _citation.year 2011 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21978668 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2011.09.024 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pinheiro, A.S.' 1 ? primary 'Eibl, C.' 2 ? primary 'Ekman-Vural, Z.' 3 ? primary 'Schwarzenbacher, R.' 4 ? primary 'Peti, W.' 5 ? # _cell.entry_id 2L6A _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2L6A _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'NACHT, LRR and PYD domains-containing protein 12' _entity.formula_weight 11721.418 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 1-98' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Monarch-1, PYRIN-containing APAF1-like protein 7, Regulated by nitric oxide' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHMLRTAGRDGLCRLSTYLEELEAVELKKFKLYLGTATELGEGKIPWGSMEKAGPLEMAQLLITHFGPEEAWRLALSTFE RINRKDLWERGQREDLVRDTVE ; _entity_poly.pdbx_seq_one_letter_code_can ;GHMLRTAGRDGLCRLSTYLEELEAVELKKFKLYLGTATELGEGKIPWGSMEKAGPLEMAQLLITHFGPEEAWRLALSTFE RINRKDLWERGQREDLVRDTVE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 MET n 1 4 LEU n 1 5 ARG n 1 6 THR n 1 7 ALA n 1 8 GLY n 1 9 ARG n 1 10 ASP n 1 11 GLY n 1 12 LEU n 1 13 CYS n 1 14 ARG n 1 15 LEU n 1 16 SER n 1 17 THR n 1 18 TYR n 1 19 LEU n 1 20 GLU n 1 21 GLU n 1 22 LEU n 1 23 GLU n 1 24 ALA n 1 25 VAL n 1 26 GLU n 1 27 LEU n 1 28 LYS n 1 29 LYS n 1 30 PHE n 1 31 LYS n 1 32 LEU n 1 33 TYR n 1 34 LEU n 1 35 GLY n 1 36 THR n 1 37 ALA n 1 38 THR n 1 39 GLU n 1 40 LEU n 1 41 GLY n 1 42 GLU n 1 43 GLY n 1 44 LYS n 1 45 ILE n 1 46 PRO n 1 47 TRP n 1 48 GLY n 1 49 SER n 1 50 MET n 1 51 GLU n 1 52 LYS n 1 53 ALA n 1 54 GLY n 1 55 PRO n 1 56 LEU n 1 57 GLU n 1 58 MET n 1 59 ALA n 1 60 GLN n 1 61 LEU n 1 62 LEU n 1 63 ILE n 1 64 THR n 1 65 HIS n 1 66 PHE n 1 67 GLY n 1 68 PRO n 1 69 GLU n 1 70 GLU n 1 71 ALA n 1 72 TRP n 1 73 ARG n 1 74 LEU n 1 75 ALA n 1 76 LEU n 1 77 SER n 1 78 THR n 1 79 PHE n 1 80 GLU n 1 81 ARG n 1 82 ILE n 1 83 ASN n 1 84 ARG n 1 85 LYS n 1 86 ASP n 1 87 LEU n 1 88 TRP n 1 89 GLU n 1 90 ARG n 1 91 GLY n 1 92 GLN n 1 93 ARG n 1 94 GLU n 1 95 ASP n 1 96 LEU n 1 97 VAL n 1 98 ARG n 1 99 ASP n 1 100 THR n 1 101 VAL n 1 102 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NLRP12, NALP12, PYPAF7, RNO' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'pHis parallel STOP' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NAL12_HUMAN _struct_ref.pdbx_db_accession P59046 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLRTAGRDGLCRLSTYLEELEAVELKKFKLYLGTATELGEGKIPWGSMEKAGPLEMAQLLITHFGPEEAWRLALSTFERI NRKDLWERGQREDLVRDT ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L6A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 100 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P59046 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 98 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 100 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2L6A GLY A 1 ? UNP P59046 ? ? 'expression tag' 1 1 1 2L6A HIS A 2 ? UNP P59046 ? ? 'expression tag' 2 2 1 2L6A VAL A 101 ? UNP P59046 ? ? 'expression tag' 101 3 1 2L6A GLU A 102 ? UNP P59046 ? ? 'expression tag' 102 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 2 '2D 1H-13C HSQC' 1 3 2 '3D HNCA' 1 4 2 '3D HNCACB' 1 5 2 '3D CBCA(CO)NH' 1 6 2 '3D HNCO' 1 7 2 '3D HN(CA)CO' 1 8 2 '3D HBHA(CO)NH' 1 9 2 '3D C(CO)NH' 1 10 2 '3D HCCH-TOCSY' 1 11 1 '3D 1H-15N NOESY' 1 12 2 '3D 1H-13C NOESY' 1 13 3 '2D 1H-1H NOESY' 1 14 3 '2D 1H-1H TOCSY' 1 15 3 '2D 1H-1H COSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.5 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '600 uM [U-99% 15N] NLRP12 PYD-1, 20 mM sodium phosphate-2, 500 mM sodium chloride-3, 0.5 mM TCEP-4, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '600 uM [U-99% 13C; U-99% 15N] NLRP12 PYD-5, 20 mM sodium phosphate-6, 500 mM sodium chloride-7, 0.5 mM TCEP-8, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '600 uM NLRP12 PYD-9, 20 mM sodium phosphate-10, 500 mM sodium chloride-11, 0.5 mM TCEP-12, 100% D2O' 3 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2L6A _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Refinement was done in explicit solvent using CNS and the RECOORD script package.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L6A _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L6A _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 2.1 1 'Bruker Biospin' processing TopSpin 2.1 2 'Keller and Wuthrich' 'chemical shift assignment' CARA ? 3 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.1 4 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS ? 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2L6A _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L6A _struct.title 'Three-dimensional structure of the N-terminal effector PYRIN domain of NLRP12' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L6A _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'NLRP12, PYRIN, death domain, signaling protein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 11 ? GLU A 20 ? GLY A 11 GLU A 20 1 ? 10 HELX_P HELX_P2 2 GLU A 23 ? THR A 36 ? GLU A 23 THR A 36 1 ? 14 HELX_P HELX_P3 3 GLY A 54 ? PHE A 66 ? GLY A 54 PHE A 66 1 ? 13 HELX_P HELX_P4 4 GLY A 67 ? GLU A 80 ? GLY A 67 GLU A 80 1 ? 14 HELX_P HELX_P5 5 ARG A 81 ? ASN A 83 ? ARG A 81 ASN A 83 5 ? 3 HELX_P HELX_P6 6 ARG A 84 ? ARG A 90 ? ARG A 84 ARG A 90 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2L6A _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 HIS 2 2 2 HIS HIS A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 MET 50 50 50 MET MET A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 HIS 65 65 65 HIS HIS A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 TRP 88 88 88 TRP TRP A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 GLU 102 102 102 GLU GLU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-02 2 'Structure model' 1 1 2011-12-28 3 'Structure model' 1 2 2020-02-05 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other 5 4 'Structure model' 'Database references' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_status 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' struct_ref_seq_dif 5 4 'Structure model' database_2 6 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code_cs' 2 3 'Structure model' '_pdbx_nmr_software.name' 3 3 'Structure model' '_pdbx_nmr_spectrometer.model' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'NLRP12 PYD-1' 600 ? uM '[U-99% 15N]' 1 'sodium phosphate-2' 20 ? mM ? 1 'sodium chloride-3' 500 ? mM ? 1 TCEP-4 0.5 ? mM ? 1 'NLRP12 PYD-5' 600 ? uM '[U-99% 13C; U-99% 15N]' 2 'sodium phosphate-6' 20 ? mM ? 2 'sodium chloride-7' 500 ? mM ? 2 TCEP-8 0.5 ? mM ? 2 'NLRP12 PYD-9' 600 ? uM ? 3 'sodium phosphate-10' 20 ? mM ? 3 'sodium chloride-11' 500 ? mM ? 3 TCEP-12 0.5 ? mM ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ3 A LYS 31 ? ? OE1 A GLU 51 ? ? 1.58 2 4 OE2 A GLU 26 ? ? HZ3 A LYS 29 ? ? 1.57 3 6 OE1 A GLU 42 ? ? HZ2 A LYS 44 ? ? 1.60 4 7 OE1 A GLU 42 ? ? HZ1 A LYS 44 ? ? 1.59 5 8 HZ1 A LYS 31 ? ? OE2 A GLU 51 ? ? 1.57 6 15 HZ3 A LYS 31 ? ? OE2 A GLU 51 ? ? 1.59 7 17 HZ3 A LYS 85 ? ? OE2 A GLU 89 ? ? 1.60 8 17 HZ2 A LYS 31 ? ? OE1 A GLU 51 ? ? 1.60 9 18 OE1 A GLU 51 ? ? HZ2 A LYS 52 ? ? 1.58 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 4 _pdbx_validate_rmsd_bond.auth_atom_id_1 N _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLY _pdbx_validate_rmsd_bond.auth_seq_id_1 43 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CA _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLY _pdbx_validate_rmsd_bond.auth_seq_id_2 43 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.349 _pdbx_validate_rmsd_bond.bond_target_value 1.456 _pdbx_validate_rmsd_bond.bond_deviation -0.107 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 10 ? ? -93.00 -109.17 2 1 PRO A 46 ? ? -55.86 173.63 3 1 GLU A 94 ? ? 58.13 -88.71 4 1 LEU A 96 ? ? 67.62 143.19 5 1 ARG A 98 ? ? -147.48 -74.44 6 1 THR A 100 ? ? 71.51 -53.47 7 2 HIS A 2 ? ? 64.81 -86.87 8 2 LEU A 4 ? ? -110.27 -164.28 9 2 ARG A 9 ? ? -143.77 -62.43 10 2 ASP A 10 ? ? 57.95 -89.99 11 2 GLU A 42 ? ? -122.05 -53.95 12 2 TRP A 47 ? ? 25.61 -74.04 13 2 ARG A 84 ? ? -144.31 50.15 14 2 LEU A 96 ? ? -147.71 -82.72 15 2 ARG A 98 ? ? 66.87 109.19 16 2 ASP A 99 ? ? -164.11 -69.69 17 3 LEU A 4 ? ? 62.81 84.92 18 3 THR A 6 ? ? 77.98 121.53 19 3 TRP A 47 ? ? 31.78 -78.88 20 3 PHE A 66 ? ? -83.66 -77.22 21 3 ARG A 84 ? ? -101.23 70.32 22 3 GLN A 92 ? ? 59.15 -179.76 23 3 ASP A 95 ? ? -110.51 -151.39 24 3 VAL A 97 ? ? 73.11 79.30 25 4 MET A 3 ? ? 67.66 -160.32 26 4 LEU A 4 ? ? 77.59 116.04 27 4 ALA A 7 ? ? -147.25 -59.31 28 4 THR A 17 ? ? -107.59 -60.98 29 4 ALA A 37 ? ? -57.60 109.27 30 4 LYS A 44 ? ? -149.81 -43.19 31 4 TRP A 47 ? ? 21.23 -77.08 32 4 ARG A 84 ? ? -112.26 59.32 33 4 ARG A 93 ? ? -141.90 -18.18 34 4 ASP A 99 ? ? -164.34 -75.72 35 4 THR A 100 ? ? 66.82 -85.80 36 4 VAL A 101 ? ? 170.87 175.77 37 5 ARG A 5 ? ? -163.49 -148.43 38 5 ALA A 7 ? ? -66.32 90.55 39 5 ARG A 9 ? ? 64.48 -69.17 40 5 TRP A 47 ? ? 20.11 -80.40 41 5 PHE A 66 ? ? -91.62 -60.52 42 5 ARG A 84 ? ? -103.86 71.73 43 5 VAL A 97 ? ? -97.62 -80.79 44 5 ARG A 98 ? ? -154.63 -57.90 45 6 ASN A 83 ? ? 59.92 74.62 46 6 ARG A 84 ? ? -145.94 56.01 47 6 GLN A 92 ? ? 50.59 -84.55 48 6 ARG A 93 ? ? -174.11 24.05 49 6 ASP A 95 ? ? -123.70 -165.88 50 6 THR A 100 ? ? -149.64 24.16 51 7 ARG A 9 ? ? 71.58 -42.52 52 7 PRO A 46 ? ? -68.22 -165.69 53 7 ARG A 84 ? ? -144.27 47.56 54 7 ARG A 98 ? ? -137.98 -60.55 55 8 MET A 3 ? ? 71.59 -57.28 56 8 ARG A 5 ? ? 61.38 176.01 57 8 ARG A 9 ? ? 61.24 90.28 58 8 LEU A 12 ? ? -140.11 -57.81 59 8 GLU A 42 ? ? -144.84 -50.88 60 8 TRP A 47 ? ? 42.53 -72.60 61 8 GLN A 92 ? ? -65.33 98.46 62 8 VAL A 97 ? ? 75.25 117.29 63 8 ARG A 98 ? ? -97.96 59.55 64 8 VAL A 101 ? ? -130.52 -58.20 65 9 ALA A 7 ? ? 61.19 87.93 66 9 GLU A 42 ? ? 71.01 -0.19 67 9 PRO A 46 ? ? -73.38 -164.06 68 9 PHE A 66 ? ? -90.79 -77.71 69 9 ASN A 83 ? ? 71.86 35.75 70 9 GLN A 92 ? ? 50.12 -169.15 71 9 ARG A 93 ? ? -147.12 -69.57 72 9 LEU A 96 ? ? 61.00 114.47 73 9 VAL A 97 ? ? 69.37 123.28 74 9 ASP A 99 ? ? -98.76 -70.32 75 10 HIS A 2 ? ? 65.08 89.97 76 10 ARG A 5 ? ? 59.14 -90.95 77 10 ASN A 83 ? ? 68.54 72.97 78 10 ARG A 84 ? ? -157.07 77.09 79 10 LEU A 96 ? ? -129.99 -56.10 80 10 ARG A 98 ? ? 83.55 75.80 81 10 THR A 100 ? ? -96.01 -76.90 82 11 LEU A 4 ? ? 69.28 118.17 83 11 ARG A 9 ? ? -144.12 -77.58 84 11 ASP A 10 ? ? 58.33 -152.58 85 11 PHE A 66 ? ? -86.77 -75.38 86 11 ASN A 83 ? ? 72.83 31.49 87 11 ASP A 95 ? ? 61.09 -167.01 88 11 THR A 100 ? ? -100.05 -71.51 89 11 VAL A 101 ? ? -100.24 -70.87 90 12 HIS A 2 ? ? 66.06 -74.94 91 12 LEU A 12 ? ? -143.75 -49.27 92 12 GLU A 42 ? ? 70.15 -65.96 93 12 ASN A 83 ? ? 62.52 66.58 94 12 ARG A 84 ? ? -147.30 40.47 95 12 VAL A 97 ? ? -106.38 -76.80 96 12 ARG A 98 ? ? 163.09 -171.16 97 12 ASP A 99 ? ? -59.17 108.58 98 13 HIS A 2 ? ? 51.99 -84.75 99 13 ARG A 84 ? ? -111.54 69.58 100 13 VAL A 97 ? ? 65.70 -80.49 101 13 ASP A 99 ? ? 64.05 -173.11 102 14 HIS A 2 ? ? 72.42 -69.75 103 14 ARG A 5 ? ? 57.19 86.16 104 14 ALA A 7 ? ? -150.69 31.48 105 14 GLU A 42 ? ? -143.68 -47.73 106 14 TRP A 47 ? ? 27.58 -68.39 107 15 ARG A 5 ? ? -74.04 -95.05 108 15 GLN A 92 ? ? 66.92 -169.76 109 15 GLU A 94 ? ? 63.31 -161.87 110 15 LEU A 96 ? ? -151.11 -45.03 111 16 HIS A 2 ? ? -119.83 68.88 112 16 LEU A 4 ? ? 64.57 -152.51 113 16 GLU A 42 ? ? 66.49 -2.18 114 16 ASN A 83 ? ? 80.35 16.08 115 16 GLN A 92 ? ? 68.24 112.15 116 16 LEU A 96 ? ? -131.83 -66.89 117 16 ARG A 98 ? ? 58.52 -89.31 118 16 ASP A 99 ? ? 177.59 -70.78 119 17 ARG A 5 ? ? 59.00 74.29 120 17 ARG A 9 ? ? 68.55 -45.17 121 17 CYS A 13 ? ? 66.64 -67.82 122 17 GLU A 42 ? ? 70.62 -53.05 123 17 TRP A 47 ? ? -26.43 -61.03 124 17 PHE A 66 ? ? -71.32 -71.81 125 17 ASN A 83 ? ? 60.43 64.80 126 17 ARG A 84 ? ? -142.39 52.73 127 17 GLU A 94 ? ? 38.56 80.59 128 17 LEU A 96 ? ? 70.67 153.85 129 18 MET A 3 ? ? 69.01 82.71 130 18 ARG A 5 ? ? 74.42 96.99 131 18 ALA A 7 ? ? -170.49 -178.86 132 18 ARG A 9 ? ? 175.06 154.96 133 18 GLU A 42 ? ? -131.47 -47.40 134 18 TRP A 47 ? ? -38.67 -39.63 135 18 ARG A 84 ? ? -113.41 51.23 136 18 LEU A 96 ? ? 72.98 161.50 137 18 VAL A 101 ? ? 75.70 106.07 138 19 LEU A 4 ? ? 48.14 81.13 139 19 ARG A 5 ? ? -154.25 -54.80 140 19 ASP A 10 ? ? -167.94 -168.92 141 19 LEU A 12 ? ? -142.78 -56.07 142 19 THR A 17 ? ? -142.93 -45.84 143 19 ILE A 45 ? ? 63.23 134.13 144 19 TRP A 47 ? ? -32.43 -39.23 145 19 HIS A 65 ? ? -97.65 -67.94 146 19 ASP A 95 ? ? 172.48 -176.59 147 19 VAL A 97 ? ? -168.53 -40.35 148 19 ARG A 98 ? ? -108.62 -63.12 149 20 MET A 3 ? ? 61.31 80.77 150 20 LEU A 4 ? ? -79.44 -169.12 151 20 ARG A 5 ? ? 72.50 93.37 152 20 ASP A 10 ? ? 77.19 -54.59 153 20 CYS A 13 ? ? 177.59 -66.62 154 20 ARG A 84 ? ? -144.35 56.69 155 20 GLN A 92 ? ? 61.11 -179.84 156 20 ARG A 93 ? ? -150.64 -39.49 157 20 ASP A 99 ? ? 165.53 -46.50 158 20 THR A 100 ? ? -75.58 -81.78 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 8 ARG A 73 ? ? 0.091 'SIDE CHAIN' 2 18 ARG A 73 ? ? 0.073 'SIDE CHAIN' 3 20 ARG A 81 ? ? 0.082 'SIDE CHAIN' #