HEADER TRANSFERASE,CELL ADHESION 19-NOV-10 2L6F TITLE NMR SOLUTION STRUCTURE OF FAT DOMAIN OF FAK COMPLEXED WITH LD2 AND LD4 TITLE 2 MOTIFS OF PAXILLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOCAL ADHESION KINASE 1, LINKER1, PAXILLIN, LINKER2, COMPND 3 PAXILLIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: FAT DOMAIN, UNP RESIDUES 916-1053, LINKER1, LD2, UNP COMPND 6 RESIDUES 140-161, LINKER2, LD4, UNP RESIDUES 262-276; COMPND 7 SYNONYM: FADK 1, PROTEIN-TYROSINE KINASE 2, PP125FAK; COMPND 8 EC: 2.7.10.2; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: FAT DOMAIN OF FOCAL ADHESION KINASE WITH THE LD2 MOTIF COMPND 11 OF PAXILLIN TETHERED VIA LINKER1 GSGGSGSGGSGGSG WHICH IS THEN LINKED COMPND 12 TO LD4 MOTIF OF PAXILLIN VIA LINKER 2 GSGSGSGSGGSGGSGGSGGSGGSGGS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS, UNIDENTIFIED; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031, 32644; SOURCE 5 GENE: PTK2, FAK, FAK1, PXN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FAT, FAK, LD2, LD4, PAXILLIN, FUSION PROTEIN, CHIMERA PROTEIN, KEYWDS 2 TRANSFERASE, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.M.BERTOLUCCI,C.GUIBAO,C.ZHANG,J.ZHENG REVDAT 3 01-MAY-24 2L6F 1 REMARK SEQADV REVDAT 2 09-APR-14 2L6F 1 SOURCE REVDAT 1 30-MAY-12 2L6F 0 JRNL AUTH C.M.BERTOLUCCI,C.GUIBAO,J.ZHENG JRNL TITL NMR SOLUTION STRUCTURE OF FAT DOMAIN OF FAK COMPLEXED WITH JRNL TITL 2 LD2 AND LD4 MOTIFS OF PAXILLIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SAMPLES USED ARE CONSTRUCTS IN REMARK 3 WHICH ONE MOTIF IS TETHERED TO THE C-TERMINUS OF THE FAT DOMAIN REMARK 3 VIA A GGSX LINKER AND THE OTHER LD MOTIF IS BOUND AS A FREE REMARK 3 PEPTIDE. THE GGS LINKERS ARE UNSTRUCTURED AND COMPARISON OF REMARK 3 SPECTRA LEAD US TO BELIEVE THEY DO NOT IMPOSE ANY CONSTRAINT REMARK 3 UPON HOW THE TETHERED LD MOTIFS BIND TO FAT. HOWEVER WHEN REMARK 3 ANALYZING THE STRUCTURE IN CYANA, THE PRESENCE OF THE GGS LINKER REMARK 3 IN THE SEQUENCE INTERFERS WITH CYANA'S INITIAL ALIGNMENT OF THE REMARK 3 20 LOWEST ENERGY STRUCTURES AND THUS CONFUSES RMSD AND TARGET REMARK 3 FUNCTION CALCULATIONS. WE FOUND THAT USING PSEUDO LINKERS IN REMARK 3 CYANA RESOLVED THIS PROBLEM WITHOUT CHANGING THE STRUCTURES IN REMARK 3 QUESTION AND SO WE CHOSE TO SUBMIT THE STRUCTURES IN THAT WAY. REMARK 3 2RP6 REPRESENTS A COMPOSITE STRUCTURE USING CONSTRAINTS OBTAINED REMARK 3 FROM THE 2RP7 AND 2RP9 DATA SETS. IT DOES NOT REPRESENT A NEW REMARK 3 CONSTRUCT IN ITSELF, BUT MOST ACCURATELY REPRESENTS THE COMPLETE REMARK 3 COMPLEX STRUCTURE BETWEEN PAXILLIN AND FOCAL ADHESION KINASE. REMARK 4 REMARK 4 2L6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000102015. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 FOCAL ADHESION KINASE 1, LINKER, REMARK 210 22-MERIC PEPTIDE FROM PAXILLIN, REMARK 210 LINKER, 15-MERIC PEPTIDE FROM REMARK 210 PAXILLIN-1, 10 MM POTASSIUM REMARK 210 PHOSPHATE-2, 0.1 % SODIUM AZIDE- REMARK 210 3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D HNCA; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HNCACB; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY 3, NMRPIPE, MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 143 REMARK 465 GLY A 144 REMARK 465 SER A 145 REMARK 465 GLY A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLY A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 465 GLY A 180 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 GLY A 184 REMARK 465 SER A 185 REMARK 465 GLY A 186 REMARK 465 GLY A 187 REMARK 465 SER A 188 REMARK 465 GLY A 189 REMARK 465 GLY A 190 REMARK 465 SER A 191 REMARK 465 GLY A 192 REMARK 465 GLY A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 GLY A 196 REMARK 465 SER A 197 REMARK 465 GLY A 198 REMARK 465 GLY A 199 REMARK 465 SER A 200 REMARK 465 GLY A 201 REMARK 465 GLY A 202 REMARK 465 SER A 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 5 33.05 -140.80 REMARK 500 1 LEU A 7 37.95 -95.78 REMARK 500 1 ALA A 35 106.90 -47.68 REMARK 500 1 SER A 68 -32.21 178.09 REMARK 500 1 THR A 100 -74.31 -82.75 REMARK 500 1 SER A 101 -34.48 -179.82 REMARK 500 1 GLN A 103 -67.20 -90.16 REMARK 500 1 GLN A 138 -59.56 -175.78 REMARK 500 1 SER A 139 142.29 -175.68 REMARK 500 1 ARG A 140 73.41 59.60 REMARK 500 2 ALA A 5 47.87 -90.71 REMARK 500 2 LEU A 7 31.70 -95.98 REMARK 500 2 ALA A 35 106.37 -46.96 REMARK 500 2 SER A 68 -33.42 178.15 REMARK 500 2 TYR A 97 33.77 -95.63 REMARK 500 2 THR A 100 -75.26 -80.14 REMARK 500 2 SER A 101 -34.39 179.03 REMARK 500 2 GLN A 103 -66.76 -93.19 REMARK 500 2 GLN A 138 -59.01 -174.03 REMARK 500 2 SER A 139 131.05 -172.35 REMARK 500 2 ARG A 140 68.79 61.01 REMARK 500 3 LEU A 7 37.57 -95.10 REMARK 500 3 ALA A 35 107.36 -48.44 REMARK 500 3 SER A 68 -33.95 178.21 REMARK 500 3 GLN A 77 -71.66 -62.58 REMARK 500 3 THR A 100 -74.61 -81.16 REMARK 500 3 SER A 101 -34.08 179.69 REMARK 500 3 GLN A 103 -64.74 -95.45 REMARK 500 3 GLN A 138 -59.80 -178.95 REMARK 500 3 SER A 139 131.71 -174.45 REMARK 500 4 ALA A 5 74.40 -112.60 REMARK 500 4 ASN A 6 34.19 -178.72 REMARK 500 4 ALA A 35 107.23 -47.74 REMARK 500 4 SER A 68 -32.54 177.82 REMARK 500 4 THR A 100 -74.01 -84.32 REMARK 500 4 SER A 101 -34.41 -179.90 REMARK 500 4 GLN A 138 -59.30 -178.27 REMARK 500 4 SER A 139 131.42 -173.11 REMARK 500 4 ARG A 140 71.62 -159.15 REMARK 500 4 ASN A 159 102.66 63.04 REMARK 500 5 ALA A 35 106.58 -46.79 REMARK 500 5 SER A 68 -30.96 173.80 REMARK 500 5 THR A 100 -74.21 -77.81 REMARK 500 5 SER A 101 -36.02 -179.76 REMARK 500 5 GLN A 103 -74.38 -91.89 REMARK 500 5 GLN A 138 -58.99 -173.34 REMARK 500 5 SER A 139 132.28 -173.24 REMARK 500 5 ARG A 140 69.96 60.28 REMARK 500 5 ASN A 159 131.29 -171.21 REMARK 500 6 ALA A 5 109.60 -51.78 REMARK 500 REMARK 500 THIS ENTRY HAS 209 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L6G RELATED DB: PDB REMARK 900 RELATED ID: 2L6H RELATED DB: PDB DBREF 2L6F A 5 142 UNP Q00944 FAK1_CHICK 916 1053 DBREF 2L6F A 158 179 UNP P49024 PAXI_CHICK 140 161 DBREF 2L6F A 205 218 UNP P49024 PAXI_CHICK 262 275 SEQADV 2L6F MET A 4 UNP Q00944 INITIATING METHIONINE SEQADV 2L6F GLY A 143 UNP Q00944 LINKER SEQADV 2L6F GLY A 144 UNP Q00944 LINKER SEQADV 2L6F SER A 145 UNP Q00944 LINKER SEQADV 2L6F GLY A 146 UNP Q00944 LINKER SEQADV 2L6F GLY A 147 UNP Q00944 LINKER SEQADV 2L6F SER A 148 UNP Q00944 LINKER SEQADV 2L6F GLY A 149 UNP Q00944 LINKER SEQADV 2L6F SER A 150 UNP Q00944 LINKER SEQADV 2L6F GLY A 151 UNP Q00944 LINKER SEQADV 2L6F GLY A 152 UNP Q00944 LINKER SEQADV 2L6F SER A 153 UNP Q00944 LINKER SEQADV 2L6F GLY A 154 UNP Q00944 LINKER SEQADV 2L6F GLY A 155 UNP Q00944 LINKER SEQADV 2L6F SER A 156 UNP Q00944 LINKER SEQADV 2L6F GLY A 157 UNP Q00944 LINKER SEQADV 2L6F GLY A 180 UNP P49024 LINKER SEQADV 2L6F SER A 181 UNP P49024 LINKER SEQADV 2L6F GLY A 182 UNP P49024 LINKER SEQADV 2L6F SER A 183 UNP P49024 LINKER SEQADV 2L6F GLY A 184 UNP P49024 LINKER SEQADV 2L6F SER A 185 UNP P49024 LINKER SEQADV 2L6F GLY A 186 UNP P49024 LINKER SEQADV 2L6F GLY A 187 UNP P49024 LINKER SEQADV 2L6F SER A 188 UNP P49024 LINKER SEQADV 2L6F GLY A 189 UNP P49024 LINKER SEQADV 2L6F GLY A 190 UNP P49024 LINKER SEQADV 2L6F SER A 191 UNP P49024 LINKER SEQADV 2L6F GLY A 192 UNP P49024 LINKER SEQADV 2L6F GLY A 193 UNP P49024 LINKER SEQADV 2L6F SER A 194 UNP P49024 LINKER SEQADV 2L6F GLY A 195 UNP P49024 LINKER SEQADV 2L6F GLY A 196 UNP P49024 LINKER SEQADV 2L6F SER A 197 UNP P49024 LINKER SEQADV 2L6F GLY A 198 UNP P49024 LINKER SEQADV 2L6F GLY A 199 UNP P49024 LINKER SEQADV 2L6F SER A 200 UNP P49024 LINKER SEQADV 2L6F GLY A 201 UNP P49024 LINKER SEQADV 2L6F GLY A 202 UNP P49024 LINKER SEQADV 2L6F SER A 203 UNP P49024 LINKER SEQADV 2L6F SER A 204 UNP P49024 LINKER SEQRES 1 A 215 MET ALA ASN LEU ASP ARG SER ASN ASP LYS VAL TYR GLU SEQRES 2 A 215 ASN VAL THR GLY LEU VAL LYS ALA VAL ILE GLU MET SER SEQRES 3 A 215 SER LYS ILE GLN PRO ALA PRO PRO GLU GLU TYR VAL PRO SEQRES 4 A 215 MET VAL LYS GLU VAL GLY LEU ALA LEU ARG THR LEU LEU SEQRES 5 A 215 ALA THR VAL ASP GLU SER LEU PRO VAL LEU PRO ALA SER SEQRES 6 A 215 THR HIS ARG GLU ILE GLU MET ALA GLN LYS LEU LEU ASN SEQRES 7 A 215 SER ASP LEU ALA GLU LEU ILE ASN LYS MET LYS LEU ALA SEQRES 8 A 215 GLN GLN TYR VAL MET THR SER LEU GLN GLN GLU TYR LYS SEQRES 9 A 215 LYS GLN MET LEU THR ALA ALA HIS ALA LEU ALA VAL ASP SEQRES 10 A 215 ALA LYS ASN LEU LEU ASP VAL ILE ASP GLN ALA ARG LEU SEQRES 11 A 215 LYS MET ILE SER GLN SER ARG PRO HIS GLY GLY SER GLY SEQRES 12 A 215 GLY SER GLY SER GLY GLY SER GLY GLY SER GLY SER ASN SEQRES 13 A 215 LEU SER GLU LEU ASP ARG LEU LEU LEU GLU LEU ASN ALA SEQRES 14 A 215 VAL GLN HIS ASN PRO PRO SER GLY SER GLY SER GLY SER SEQRES 15 A 215 GLY GLY SER GLY GLY SER GLY GLY SER GLY GLY SER GLY SEQRES 16 A 215 GLY SER GLY GLY SER SER ALA THR ARG GLU LEU ASP GLU SEQRES 17 A 215 LEU MET ALA SER LEU SER ASP HELIX 1 1 ARG A 9 LYS A 31 1 23 HELIX 2 2 PRO A 36 LEU A 65 1 30 HELIX 3 3 THR A 69 TYR A 97 1 29 HELIX 4 4 LEU A 102 SER A 137 1 36 HELIX 5 5 ASN A 159 ASN A 176 1 18 HELIX 6 6 SER A 204 ASP A 218 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1