HEADER TRANSFERASE,CELL ADHESION 19-NOV-10 2L6H TITLE FAT DOMAIN OF FOCAL ADHESION KINASE TETHERED TO LD4 MOTIF OF PAXILLIN TITLE 2 VIA GGS LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOCAL ADHESION KINASE 1, LINKER, PAXILLIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FAT DOMAIN, UNP RESIDUES 916-1053, LINKER, LD4, UNP COMPND 5 RESIDUES 262-276; COMPND 6 SYNONYM: FADK 1, PROTEIN-TYROSINE KINASE 2, PP125FAK; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: FAT DOMAIN OF FOCAL ADHESION KINASE WITH THE LD4 MOTIF COMPND 10 OF PAXILLIN TETHERED VIA LINKER GSGSGSGSGGSGGSGGSGGSGGSGGS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS, UNIDENTIFIED; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031, 32644; SOURCE 5 GENE: PTK2, FAK, FAK1, PXN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FAT, FAK, LD4, LD2, PAXILLIN, FUSION PROTEIN, CHIMERA PROTEIN, KEYWDS 2 TRANSFERASE, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.M.BERTOLUCCI,C.GUIBAO,C.ZHANG,J.ZHENG REVDAT 3 01-MAY-24 2L6H 1 REMARK SEQADV REVDAT 2 09-APR-14 2L6H 1 SOURCE REVDAT 1 30-MAY-12 2L6H 0 JRNL AUTH C.M.BERTOLUCCI,C.GUIBAO,J.ZHENG JRNL TITL FAT DOMAIN OF FOCAL ADHESION KINASE TETHERED TO LD4 MOTIF OF JRNL TITL 2 PAXILLIN VIA GGS LINKER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE SAMPLES USED ARE CONSTRUCTS IN REMARK 3 WHICH ONE MOTIF IS TETHERED TO THE C-TERMINUS OF THE FAT DOMAIN REMARK 3 VIA A GGSX LINKER AND THE OTHER LD MOTIF IS BOUND AS A FREE REMARK 3 PEPTIDE. THE GGS LINKERS ARE UNSTRUCTURED AND COMPARISON OF REMARK 3 SPECTRA LEAD US TO BELIEVE THEY DO NOT IMPOSE ANY CONSTRAINT REMARK 3 UPON HOW THE TETHERED LD MOTIFS BIND TO FAT. HOWEVER WHEN REMARK 3 ANALYZING THE STRUCTURE IN CYANA, THE PRESENCE OF THE GGS LINKER REMARK 3 IN THE SEQUENCE INTERFERS WITH CYANA'S INITIAL ALIGNMENT OF THE REMARK 3 20 LOWEST ENERGY STRUCTURES AND THUS CONFUSES RMSD AND TARGET REMARK 3 FUNCTION CALCULATIONS. WE FOUND THAT USING PSEUDO LINKERS IN REMARK 3 CYANA RESOLVED THIS PROBLEM WITHOUT CHANGING THE STRUCTURES IN REMARK 3 QUESTION AND SO WE CHOSE TO SUBMIT THE STRUCTURES IN THAT WAY. REMARK 3 2RP6 REPRESENTS A COMPOSITE STRUCTURE USING CONSTRAINTS OBTAINED REMARK 3 FROM THE 2RP7 AND 2RP9 DATA SETS. IT DOES NOT REPRESENT A NEW REMARK 3 CONSTRUCT IN ITSELF, BUT MOST ACCURATELY REPRESENTS THE COMPLETE REMARK 3 COMPLEX STRUCTURE BETWEEN PAXILLIN AND FOCAL ADHESION KINASE. REMARK 4 REMARK 4 2L6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000102017. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 FOCAL ADHESION KINASE 1, LINKER, REMARK 210 15-MERIC PEPTIDE FROM PAXILLIN-1, REMARK 210 10 MM POTASSIUM PHOSPHATE-2, REMARK 210 0.1 % SODIUM AZIDE-3, 5 MM LD2 REMARK 210 FROM PAXILLIN-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D HNCA; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HNCACB; 2D 1H-15N HSQC; REMARK 210 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY, NMRPIPE, MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 143 REMARK 465 SER A 144 REMARK 465 GLY A 145 REMARK 465 SER A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLY A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 465 GLY A 158 REMARK 465 SER A 159 REMARK 465 GLY A 160 REMARK 465 GLY A 161 REMARK 465 SER A 162 REMARK 465 GLY A 163 REMARK 465 GLY A 164 REMARK 465 SER A 165 REMARK 465 GLY A 166 REMARK 465 GLY A 167 REMARK 465 SER A 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 16 -61.84 -90.35 REMARK 500 1 ALA A 35 106.80 -47.30 REMARK 500 1 SER A 68 -34.20 178.64 REMARK 500 1 THR A 100 -77.38 -85.52 REMARK 500 1 SER A 101 -33.24 177.35 REMARK 500 1 GLN A 103 -65.88 -91.62 REMARK 500 1 GLU A 105 -73.14 -51.99 REMARK 500 1 GLN A 138 -59.10 -172.89 REMARK 500 1 SER A 139 139.92 -178.68 REMARK 500 1 ARG A 140 73.32 60.23 REMARK 500 2 ASP A 8 32.93 -99.09 REMARK 500 2 ARG A 9 -63.81 -97.94 REMARK 500 2 LYS A 31 30.07 -98.58 REMARK 500 2 ALA A 35 107.03 -47.66 REMARK 500 2 SER A 68 -32.36 176.92 REMARK 500 2 THR A 100 -75.49 -85.25 REMARK 500 2 SER A 101 -33.06 178.27 REMARK 500 2 GLN A 103 -64.65 -94.02 REMARK 500 2 GLU A 105 -74.61 -52.73 REMARK 500 2 GLN A 138 -59.50 -176.35 REMARK 500 2 SER A 139 136.41 -172.99 REMARK 500 2 PRO A 141 96.57 -69.80 REMARK 500 3 ASN A 6 93.46 -171.49 REMARK 500 3 ALA A 35 106.19 -45.68 REMARK 500 3 SER A 68 -35.44 178.73 REMARK 500 3 LEU A 84 -71.16 -52.16 REMARK 500 3 THR A 100 -72.90 -87.86 REMARK 500 3 SER A 101 -30.59 177.60 REMARK 500 3 GLN A 103 -61.66 -96.81 REMARK 500 3 GLN A 138 -59.00 -179.14 REMARK 500 3 SER A 139 130.94 -172.23 REMARK 500 3 PRO A 141 95.81 -69.76 REMARK 500 4 ALA A 5 75.37 59.84 REMARK 500 4 ALA A 35 107.36 -48.48 REMARK 500 4 SER A 68 -34.11 178.54 REMARK 500 4 THR A 100 -76.10 -87.00 REMARK 500 4 SER A 101 -31.78 177.31 REMARK 500 4 GLN A 138 -59.67 -179.21 REMARK 500 4 SER A 139 131.01 -172.23 REMARK 500 4 ARG A 140 73.55 -161.06 REMARK 500 4 PRO A 141 -171.01 -69.79 REMARK 500 5 ALA A 5 -75.52 -145.18 REMARK 500 5 ALA A 35 106.32 -46.73 REMARK 500 5 SER A 68 -34.44 178.32 REMARK 500 5 TYR A 97 33.65 -94.24 REMARK 500 5 THR A 100 -78.00 -87.96 REMARK 500 5 SER A 101 -29.77 173.50 REMARK 500 5 GLN A 103 -62.45 -97.31 REMARK 500 5 GLN A 138 -65.09 -178.17 REMARK 500 5 SER A 139 137.28 -175.78 REMARK 500 REMARK 500 THIS ENTRY HAS 185 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L6F RELATED DB: PDB REMARK 900 RELATED ID: 2L6G RELATED DB: PDB DBREF 2L6H A 5 142 UNP Q00944 FAK1_CHICK 916 1053 DBREF 2L6H A 170 183 UNP P49024 PAXI_CHICK 262 275 SEQADV 2L6H MET A 4 UNP Q00944 INITIATING METHIONINE SEQADV 2L6H GLY A 143 UNP Q00944 LINKER SEQADV 2L6H SER A 144 UNP Q00944 LINKER SEQADV 2L6H GLY A 145 UNP Q00944 LINKER SEQADV 2L6H SER A 146 UNP Q00944 LINKER SEQADV 2L6H GLY A 147 UNP Q00944 LINKER SEQADV 2L6H SER A 148 UNP Q00944 LINKER SEQADV 2L6H GLY A 149 UNP Q00944 LINKER SEQADV 2L6H SER A 150 UNP Q00944 LINKER SEQADV 2L6H GLY A 151 UNP Q00944 LINKER SEQADV 2L6H GLY A 152 UNP Q00944 LINKER SEQADV 2L6H SER A 153 UNP Q00944 LINKER SEQADV 2L6H GLY A 154 UNP Q00944 LINKER SEQADV 2L6H GLY A 155 UNP Q00944 LINKER SEQADV 2L6H SER A 156 UNP Q00944 LINKER SEQADV 2L6H GLY A 157 UNP Q00944 LINKER SEQADV 2L6H GLY A 158 UNP Q00944 LINKER SEQADV 2L6H SER A 159 UNP Q00944 LINKER SEQADV 2L6H GLY A 160 UNP Q00944 LINKER SEQADV 2L6H GLY A 161 UNP Q00944 LINKER SEQADV 2L6H SER A 162 UNP Q00944 LINKER SEQADV 2L6H GLY A 163 UNP Q00944 LINKER SEQADV 2L6H GLY A 164 UNP Q00944 LINKER SEQADV 2L6H SER A 165 UNP Q00944 LINKER SEQADV 2L6H GLY A 166 UNP Q00944 LINKER SEQADV 2L6H GLY A 167 UNP Q00944 LINKER SEQADV 2L6H SER A 168 UNP Q00944 LINKER SEQADV 2L6H SER A 169 UNP Q00944 LINKER SEQRES 1 A 180 MET ALA ASN LEU ASP ARG SER ASN ASP LYS VAL TYR GLU SEQRES 2 A 180 ASN VAL THR GLY LEU VAL LYS ALA VAL ILE GLU MET SER SEQRES 3 A 180 SER LYS ILE GLN PRO ALA PRO PRO GLU GLU TYR VAL PRO SEQRES 4 A 180 MET VAL LYS GLU VAL GLY LEU ALA LEU ARG THR LEU LEU SEQRES 5 A 180 ALA THR VAL ASP GLU SER LEU PRO VAL LEU PRO ALA SER SEQRES 6 A 180 THR HIS ARG GLU ILE GLU MET ALA GLN LYS LEU LEU ASN SEQRES 7 A 180 SER ASP LEU ALA GLU LEU ILE ASN LYS MET LYS LEU ALA SEQRES 8 A 180 GLN GLN TYR VAL MET THR SER LEU GLN GLN GLU TYR LYS SEQRES 9 A 180 LYS GLN MET LEU THR ALA ALA HIS ALA LEU ALA VAL ASP SEQRES 10 A 180 ALA LYS ASN LEU LEU ASP VAL ILE ASP GLN ALA ARG LEU SEQRES 11 A 180 LYS MET ILE SER GLN SER ARG PRO HIS GLY SER GLY SER SEQRES 12 A 180 GLY SER GLY SER GLY GLY SER GLY GLY SER GLY GLY SER SEQRES 13 A 180 GLY GLY SER GLY GLY SER GLY GLY SER SER ALA THR ARG SEQRES 14 A 180 GLU LEU ASP GLU LEU MET ALA SER LEU SER ASP HELIX 1 1 ARG A 9 LYS A 31 1 23 HELIX 2 2 PRO A 36 LEU A 65 1 30 HELIX 3 3 THR A 69 TYR A 97 1 29 HELIX 4 4 LEU A 102 SER A 137 1 36 HELIX 5 5 SER A 169 ASP A 183 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1