HEADER STRUCTURE GENOMICS, UNKNOWN FUNCTION 23-NOV-10 2L6O TITLE NMR STRUCTURE OF THE PROTEIN YP_926445.1 FROM SHEWANELLA AMAZONENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YP_926445.1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA AMAZONENSIS; SOURCE 3 ORGANISM_TAXID: 326297; SOURCE 4 STRAIN: SB2B; SOURCE 5 GENE: SAMA_0567; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSPEEDET KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, STRUCTURE GENOMICS, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.SERRANO,M.GERALT,B.MOHANTY,R.HORST,K.WUTHRICH,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-MAY-24 2L6O 1 REMARK REVDAT 3 22-FEB-12 2L6O 1 HEADER REVDAT 2 03-AUG-11 2L6O 1 VERSN KEYWDS REVDAT 1 15-DEC-10 2L6O 0 JRNL AUTH P.SERRANO,M.GERALT,B.MOHANTY,R.HORST,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE PROTEIN YP_926445.1 FROM SHEWANELLA JRNL TITL 2 AMAZONENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPALP REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: OPALP REMARK 4 REMARK 4 2L6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000102024. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.113 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 8 MM DTT, 4.5 REMARK 210 MM SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 (ALI); 3D 1H-15N NOESY (ARO); 5D REMARK 210 APSY-HACACONH; 4D APSY-HACANH; REMARK 210 5D APSY-CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, CARA, UNIO REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5 LEU A 17 CB - CG - CD1 ANGL. DEV. = 13.1 DEGREES REMARK 500 5 HIS A 98 CB - CG - CD2 ANGL. DEV. = -11.0 DEGREES REMARK 500 6 LEU A 61 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 7 LEU A 61 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 10 ARG A 36 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 10 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 10 LEU A 61 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 13 LEU A 61 CB - CG - CD2 ANGL. DEV. = 13.0 DEGREES REMARK 500 18 LEU A 61 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 18 CYS A 93 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 20 LEU A 61 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 37 -72.52 -64.98 REMARK 500 1 SER A 41 97.25 -165.00 REMARK 500 1 LEU A 44 -157.39 59.73 REMARK 500 1 LEU A 45 84.11 75.22 REMARK 500 1 LYS A 50 130.89 44.65 REMARK 500 1 ALA A 70 57.37 -117.87 REMARK 500 1 ALA A 71 156.24 68.11 REMARK 500 1 CYS A 92 89.57 -155.49 REMARK 500 1 CYS A 93 174.47 46.57 REMARK 500 1 THR A 94 76.76 -167.53 REMARK 500 1 SER A 95 145.64 72.02 REMARK 500 1 LYS A 96 177.59 62.85 REMARK 500 1 HIS A 98 -72.49 65.35 REMARK 500 2 LYS A 50 127.92 53.68 REMARK 500 2 ALA A 71 164.60 68.52 REMARK 500 2 CYS A 92 -176.55 54.73 REMARK 500 2 THR A 94 -62.59 -149.39 REMARK 500 2 SER A 95 -161.73 -70.93 REMARK 500 2 MET A 97 -163.48 44.73 REMARK 500 3 HIS A 8 144.63 75.22 REMARK 500 3 SER A 41 -46.58 60.52 REMARK 500 3 LYS A 42 -39.49 62.36 REMARK 500 3 LYS A 50 117.28 45.96 REMARK 500 3 ALA A 70 45.08 -150.34 REMARK 500 3 ALA A 71 165.11 69.03 REMARK 500 3 THR A 94 -164.78 60.21 REMARK 500 3 MET A 97 71.69 44.84 REMARK 500 3 HIS A 98 -85.48 58.98 REMARK 500 4 HIS A 8 147.27 75.17 REMARK 500 4 GLN A 20 90.77 -68.49 REMARK 500 4 ASN A 23 -20.83 68.70 REMARK 500 4 LYS A 50 125.67 44.63 REMARK 500 4 PHE A 56 15.30 59.63 REMARK 500 4 ASP A 64 8.80 -66.73 REMARK 500 4 ALA A 70 34.54 -91.89 REMARK 500 4 ALA A 71 166.27 64.89 REMARK 500 4 PRO A 72 -177.80 -67.03 REMARK 500 4 THR A 94 -163.02 -119.88 REMARK 500 4 SER A 95 169.60 -49.38 REMARK 500 4 LYS A 96 -170.71 53.29 REMARK 500 4 HIS A 98 -75.17 67.01 REMARK 500 4 PHE A 108 -70.46 -67.26 REMARK 500 5 LYS A 18 88.04 -156.64 REMARK 500 5 HIS A 43 152.32 -44.46 REMARK 500 5 LYS A 50 145.50 75.12 REMARK 500 5 ALA A 71 165.42 71.72 REMARK 500 5 CYS A 92 -172.40 47.54 REMARK 500 5 THR A 94 161.54 174.97 REMARK 500 5 SER A 95 109.96 63.92 REMARK 500 5 HIS A 98 -58.53 74.91 REMARK 500 REMARK 500 THIS ENTRY HAS 226 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 29 0.11 SIDE CHAIN REMARK 500 6 ARG A 29 0.08 SIDE CHAIN REMARK 500 7 ARG A 83 0.08 SIDE CHAIN REMARK 500 8 ARG A 36 0.08 SIDE CHAIN REMARK 500 9 TYR A 47 0.08 SIDE CHAIN REMARK 500 11 ARG A 29 0.08 SIDE CHAIN REMARK 500 20 ARG A 83 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 373679 RELATED DB: TARGETDB DBREF 2L6O A 1 114 UNP A1S319 A1S319_SHEAM 1 114 SEQRES 1 A 114 MET GLY ALA GLY GLN THR PRO HIS PRO GLN LEU ILE TRP SEQRES 2 A 114 PRO ALA LEU LEU LYS GLN GLN GLY CYS ASN GLU LEU LEU SEQRES 3 A 114 PRO LEU ARG THR ASN ASP ASP TRP GLN ARG PHE CYS ALA SEQRES 4 A 114 ASP SER LYS HIS LEU LEU GLN TYR GLY ASP LYS LEU VAL SEQRES 5 A 114 ASP SER ASN PHE HIS CYS PHE VAL LEU GLU GLU ASP ALA SEQRES 6 A 114 HIS TRP HIS PRO ALA ALA PRO LEU PRO PRO GLU GLY LEU SEQRES 7 A 114 ASN ASP LEU ILE ARG ALA HIS CYS ALA THR LEU GLY HIS SEQRES 8 A 114 CYS CYS THR SER LYS MET HIS LEU HIS SER VAL MET ASP SEQRES 9 A 114 ALA ILE ASP PHE LEU ASN ALA LEU GLU GLY HELIX 1 1 THR A 30 ALA A 39 1 10 HELIX 2 2 PRO A 74 GLY A 90 1 17 HELIX 3 3 SER A 101 GLU A 113 1 13 SHEET 1 A 5 LEU A 26 LEU A 28 0 SHEET 2 A 5 ALA A 15 LEU A 17 -1 N LEU A 17 O LEU A 26 SHEET 3 A 5 LEU A 51 ASP A 53 -1 O VAL A 52 N LEU A 16 SHEET 4 A 5 HIS A 57 LEU A 61 -1 O PHE A 59 N LEU A 51 SHEET 5 A 5 TRP A 67 PRO A 72 -1 O ALA A 71 N CYS A 58 CISPEP 1 TRP A 13 PRO A 14 1 -4.36 CISPEP 2 TRP A 13 PRO A 14 2 8.93 CISPEP 3 TRP A 13 PRO A 14 3 -0.84 CISPEP 4 TRP A 13 PRO A 14 4 0.05 CISPEP 5 TRP A 13 PRO A 14 5 0.98 CISPEP 6 TRP A 13 PRO A 14 6 -3.96 CISPEP 7 TRP A 13 PRO A 14 7 -1.32 CISPEP 8 TRP A 13 PRO A 14 8 -1.45 CISPEP 9 TRP A 13 PRO A 14 9 -9.82 CISPEP 10 TRP A 13 PRO A 14 10 -0.60 CISPEP 11 TRP A 13 PRO A 14 11 5.35 CISPEP 12 TRP A 13 PRO A 14 12 -0.38 CISPEP 13 TRP A 13 PRO A 14 13 1.52 CISPEP 14 TRP A 13 PRO A 14 14 -0.37 CISPEP 15 TRP A 13 PRO A 14 15 -0.16 CISPEP 16 TRP A 13 PRO A 14 16 -2.00 CISPEP 17 TRP A 13 PRO A 14 17 -12.00 CISPEP 18 TRP A 13 PRO A 14 18 -1.62 CISPEP 19 TRP A 13 PRO A 14 19 -2.35 CISPEP 20 TRP A 13 PRO A 14 20 -4.38 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1