HEADER TRANSCRIPTION 24-NOV-10 2L6U TITLE SOLUTION NMR STRUCTURE OF MED25(391-543) COMPRISING THE ACTIVATOR- TITLE 2 INTERACTING DOMAIN (ACID) OF HUMAN MEDIATOR SUBUNITI 25. NORTHEAST TITLE 3 STRUCTURAL GENOMICS CONSORTIUM TARGET HR6188A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDIATOR COMPLEX SUBUNIT MED25; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ACID DOMAIN RESIDUES 391-543; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MED25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, ARC92, ACID, PTOV, KEYWDS 3 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,W.T.RYUECHAN,D.K.SUKUMARAN,R.SHASTRY,C.CICCOSANTI,H.JANJUA, AUTHOR 2 T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 14-JUN-23 2L6U 1 REMARK REVDAT 5 18-AUG-21 2L6U 1 REMARK REVDAT 4 05-FEB-20 2L6U 1 REMARK SEQADV REVDAT 3 22-FEB-12 2L6U 1 KEYWDS REVDAT 2 28-SEP-11 2L6U 1 JRNL VERSN REVDAT 1 12-JAN-11 2L6U 0 JRNL AUTH A.ELETSKY,W.T.RUYECHAN,R.XIAO,T.B.ACTON,G.T.MONTELIONE, JRNL AUTH 2 T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF MED25(391-543) COMPRISING THE JRNL TITL 2 ACTIVATOR-INTERACTING DOMAIN (ACID) OF HUMAN MEDIATOR JRNL TITL 3 SUBUNIT 25. JRNL REF J.STRUCT.FUNCT.GENOM. V. 12 159 2011 JRNL REFN ISSN 1345-711X JRNL PMID 21785987 JRNL DOI 10.1007/S10969-011-9115-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, CYANA 3.0, AUTOSTRUCTURE 2.2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 BY RUNNING CYANA AND AUTOSTRUCTURE IN PARALLEL USING NOE-BASED REMARK 3 CONSTRAINTS AND PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM REMARK 3 TALOS+. CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED IN REMARK 3 ITERATIVE REFINEMENT WITH CYANA. THE 20 CONFORMERS OUT OF 100 REMARK 3 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY REMARK 3 SIMULATED ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS REMARK 3 WITH PARAM19 FORCE FIELD. REMARK 4 REMARK 4 2L6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000102030. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 13C U-100% 15N] REMARK 210 HR6188A, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.4 MM [U-5% 13C U-100% 15N] REMARK 210 HR6188A, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; 3D CBCA(CO) REMARK 210 NH; 3D HNCACB; 3D HN(CA)CO; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 3D HBHA(CO)NH; 2D 1H-13C CT- REMARK 210 HSQC ALIPHATIC; 2D 1H-13C CT- REMARK 210 HSQC AROMATIC; 1D 15N T1; 1D 15N REMARK 210 T2; 3D (H)CCH-TOCSY ALIPHATIC; REMARK 210 3D (H)CCH-COSY ALIPHATIC; 3D (H) REMARK 210 CCH-COSY AROMATIC; 2D 1H-15N LR- REMARK 210 HSQC FOR HISTIDINES; 2D (HB) REMARK 210 CB(CGCDCE)HDHE; 2D 1H-13C CT- REMARK 210 HSQC METHYL REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.2, CYANA 3.0, REMARK 210 AUTOSTRUCTURE 2.2.1, AUTOASSIGN REMARK 210 2.3.0, XEASY 1.3.13, TOPSPIN 2.1, REMARK 210 VNMRJ 2.2D, PROSA 6.4, CARA REMARK 210 1.8.4, TALOS+ 1.2009.0721.18 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 383 88.68 -68.62 REMARK 500 1 SER A 389 78.36 73.03 REMARK 500 1 SER A 394 -43.18 -157.49 REMARK 500 1 SER A 396 -75.21 -76.58 REMARK 500 1 SER A 416 -60.95 -172.01 REMARK 500 1 VAL A 417 -48.79 -175.58 REMARK 500 1 ASP A 418 84.81 46.80 REMARK 500 1 ALA A 419 -153.87 -140.65 REMARK 500 1 HIS A 435 -95.83 51.17 REMARK 500 1 THR A 441 -96.54 50.03 REMARK 500 1 GLU A 442 -76.46 56.76 REMARK 500 1 LEU A 461 33.55 -90.60 REMARK 500 1 ASN A 467 39.34 -88.01 REMARK 500 1 THR A 476 85.69 53.05 REMARK 500 1 ASN A 477 158.62 74.58 REMARK 500 1 PRO A 501 -155.29 -71.23 REMARK 500 1 THR A 503 -79.79 -103.01 REMARK 500 1 PRO A 505 90.03 -59.74 REMARK 500 1 CYS A 506 100.32 63.51 REMARK 500 1 GLU A 507 -81.62 -157.83 REMARK 500 1 GLN A 530 -66.92 68.44 REMARK 500 2 PRO A 412 -157.54 -79.24 REMARK 500 2 ALA A 415 -80.22 59.92 REMARK 500 2 SER A 416 -62.24 -146.84 REMARK 500 2 ASP A 418 98.78 61.94 REMARK 500 2 THR A 424 96.12 -65.52 REMARK 500 2 VAL A 433 -69.56 -106.57 REMARK 500 2 PRO A 445 -168.14 -69.89 REMARK 500 2 LEU A 461 34.94 -92.90 REMARK 500 2 ASN A 477 88.92 69.89 REMARK 500 2 ASP A 479 -30.87 -159.37 REMARK 500 2 GLU A 507 -150.24 -137.08 REMARK 500 3 HIS A 388 -53.57 -152.03 REMARK 500 3 SER A 389 98.69 -164.73 REMARK 500 3 GLN A 393 -100.51 53.62 REMARK 500 3 SER A 394 -71.23 -179.34 REMARK 500 3 SER A 396 -142.43 -88.66 REMARK 500 3 LYS A 413 120.10 67.52 REMARK 500 3 ALA A 415 -150.71 -146.03 REMARK 500 3 SER A 416 125.89 76.45 REMARK 500 3 ALA A 419 -77.88 -91.52 REMARK 500 3 ASN A 420 157.93 67.69 REMARK 500 3 LEU A 423 90.98 59.51 REMARK 500 3 GLU A 437 -161.65 59.84 REMARK 500 3 THR A 441 -88.08 49.22 REMARK 500 3 GLU A 442 -77.34 64.07 REMARK 500 3 GLN A 443 38.98 -89.69 REMARK 500 3 LEU A 461 34.51 -95.42 REMARK 500 3 ASN A 467 36.75 -99.90 REMARK 500 3 ASP A 479 -29.79 -172.94 REMARK 500 REMARK 500 THIS ENTRY HAS 352 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR6188A RELATED DB: TARGETDB REMARK 900 RELATED ID: 17323 RELATED DB: BMRB DBREF 2L6U A 391 543 UNP Q71SY5 MED25_HUMAN 391 543 SEQADV 2L6U MET A 381 UNP Q71SY5 EXPRESSION TAG SEQADV 2L6U GLY A 382 UNP Q71SY5 EXPRESSION TAG SEQADV 2L6U HIS A 383 UNP Q71SY5 EXPRESSION TAG SEQADV 2L6U HIS A 384 UNP Q71SY5 EXPRESSION TAG SEQADV 2L6U HIS A 385 UNP Q71SY5 EXPRESSION TAG SEQADV 2L6U HIS A 386 UNP Q71SY5 EXPRESSION TAG SEQADV 2L6U HIS A 387 UNP Q71SY5 EXPRESSION TAG SEQADV 2L6U HIS A 388 UNP Q71SY5 EXPRESSION TAG SEQADV 2L6U SER A 389 UNP Q71SY5 EXPRESSION TAG SEQADV 2L6U HIS A 390 UNP Q71SY5 EXPRESSION TAG SEQRES 1 A 163 MET GLY HIS HIS HIS HIS HIS HIS SER HIS GLY GLN GLN SEQRES 2 A 163 SER VAL SER ASN LYS LEU LEU ALA TRP SER GLY VAL LEU SEQRES 3 A 163 GLU TRP GLN GLU LYS PRO LYS PRO ALA SER VAL ASP ALA SEQRES 4 A 163 ASN THR LYS LEU THR ARG SER LEU PRO CYS GLN VAL TYR SEQRES 5 A 163 VAL ASN HIS GLY GLU ASN LEU LYS THR GLU GLN TRP PRO SEQRES 6 A 163 GLN LYS LEU ILE MET GLN LEU ILE PRO GLN GLN LEU LEU SEQRES 7 A 163 THR THR LEU GLY PRO LEU PHE ARG ASN SER ARG MET VAL SEQRES 8 A 163 GLN PHE HIS PHE THR ASN LYS ASP LEU GLU SER LEU LYS SEQRES 9 A 163 GLY LEU TYR ARG ILE MET GLY ASN GLY PHE ALA GLY CYS SEQRES 10 A 163 VAL HIS PHE PRO HIS THR ALA PRO CYS GLU VAL ARG VAL SEQRES 11 A 163 LEU MET LEU LEU TYR SER SER LYS LYS LYS ILE PHE MET SEQRES 12 A 163 GLY LEU ILE PRO TYR ASP GLN SER GLY PHE VAL ASN GLY SEQRES 13 A 163 ILE ARG GLN VAL ILE THR ASN HELIX 1 1 GLN A 456 ARG A 466 5 11 HELIX 2 2 LEU A 480 ASN A 492 1 13 HELIX 3 3 GLN A 530 ILE A 541 1 12 SHEET 1 A 8 LEU A 399 GLN A 409 0 SHEET 2 A 8 THR A 424 VAL A 433 -1 O LEU A 427 N LEU A 406 SHEET 3 A 8 SER A 468 PHE A 473 -1 O GLN A 472 N TYR A 432 SHEET 4 A 8 PHE A 522 PRO A 527 -1 O PHE A 522 N PHE A 473 SHEET 5 A 8 VAL A 510 TYR A 515 -1 N MET A 512 O LEU A 525 SHEET 6 A 8 PHE A 494 HIS A 499 -1 N GLY A 496 O LEU A 513 SHEET 7 A 8 LYS A 447 PRO A 454 -1 N GLN A 451 O CYS A 497 SHEET 8 A 8 LEU A 399 GLN A 409 1 N GLU A 407 O LEU A 448 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1