HEADER MEMBRANE PROTEIN 29-NOV-10 2L6W TITLE PDGFR BETA-TM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-TYPE PLATELET-DERIVED GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 526-563; COMPND 5 SYNONYM: PDGF-R-BETA, CD140 ANTIGEN-LIKE FAMILY MEMBER B; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDGFRB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL 21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMMHB KEYWDS TRANSMEMBRANE HELIX, RECEPTOR TYROSINE KINASE, HEPTAD REPEAT, KEYWDS 2 MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.MUHLE-GOLL,S.HOFFMANN,A.S.ULRICH REVDAT 2 05-FEB-14 2L6W 1 JRNL REVDAT 1 30-MAY-12 2L6W 0 JRNL AUTH C.MUHLE-GOLL,S.HOFFMANN,S.AFONIN,S.L.GRAGE,A.A.POLYANSKY, JRNL AUTH 2 D.WINDISCH,M.ZEITLER,J.BURCK,A.S.ULRICH JRNL TITL HYDROPHOBIC MATCHING CONTROLS THE TILT AND STABILITY OF THE JRNL TITL 2 DIMERIC PLATELET-DERIVED GROWTH FACTOR RECEPTOR (PDGFR) BETA JRNL TITL 3 TRANSMEMBRANE SEGMENT. JRNL REF J.BIOL.CHEM. V. 287 26178 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22619173 JRNL DOI 10.1074/JBC.M111.325555 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-10. REMARK 100 THE RCSB ID CODE IS RCSB102032. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 323; 310 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 120; 120 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] PDGFR-TM, 200 REMARK 210 MM [U-2H] DPC, 90% H2O/10% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] PDGFR REMARK 210 -TM, 200 MM [U-2H] DPC, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N] AND NATURAL ABUNDANCE PDGFR- REMARK 210 TM, 200 MM DPC, 100% D2O; 1 MM [U REMARK 210 -100% 13C; U-100% 15N] PDGFR-TM, REMARK 210 200 MM [U-2H] DPC, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D 1H-13C NOESY; 3D REMARK 210 13C-FILTERED 13C-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, ARIA 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 -36.89 -130.02 REMARK 500 1 SER A 3 -76.08 -134.85 REMARK 500 1 SER B 3 -73.61 -136.00 REMARK 500 1 LYS B 34 -85.59 58.44 REMARK 500 2 HIS A 2 98.55 59.37 REMARK 500 3 HIS A 2 -69.68 -94.67 REMARK 500 5 HIS B 2 93.07 59.53 REMARK 500 5 SER B 3 105.60 60.39 REMARK 500 6 SER A 3 -12.54 -144.26 REMARK 500 6 LYS A 34 -85.61 60.90 REMARK 500 7 HIS A 2 -65.69 -94.72 REMARK 500 7 SER A 3 92.62 57.79 REMARK 500 7 LYS A 34 -2.51 -141.85 REMARK 500 8 HIS B 2 -168.29 57.36 REMARK 500 8 SER B 3 -172.07 59.29 REMARK 500 9 SER B 3 -70.01 -95.71 REMARK 500 11 HIS A 2 -63.03 -139.92 REMARK 500 11 HIS B 2 -67.95 -128.51 REMARK 500 12 LYS A 34 -86.45 61.21 REMARK 500 13 LYS A 34 -87.34 59.49 REMARK 500 13 HIS B 2 102.53 60.61 REMARK 500 14 LYS B 34 -84.15 62.10 REMARK 500 15 SER B 3 -39.04 -156.23 REMARK 500 15 LYS B 34 -165.70 55.82 REMARK 500 17 SER A 3 -82.20 63.13 REMARK 500 17 LYS A 34 -66.86 -120.39 REMARK 500 17 HIS B 2 -61.99 -108.98 REMARK 500 18 HIS A 2 17.42 58.68 REMARK 500 18 LYS A 34 -85.88 58.23 REMARK 500 18 HIS B 2 -7.06 -152.68 REMARK 500 19 HIS A 2 11.22 59.51 REMARK 500 19 SER A 3 99.03 59.34 REMARK 500 20 HIS A 2 -175.79 57.03 REMARK 500 20 SER A 3 -1.28 -163.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 2L6W A 2 39 UNP P09619 PGFRB_HUMAN 526 563 DBREF 2L6W B 2 39 UNP P09619 PGFRB_HUMAN 526 563 SEQADV 2L6W GLY A 1 UNP P09619 EXPRESSION TAG SEQADV 2L6W GLY B 1 UNP P09619 EXPRESSION TAG SEQRES 1 A 39 GLY HIS SER LEU PRO PHE LYS VAL VAL VAL ILE SER ALA SEQRES 2 A 39 ILE LEU ALA LEU VAL VAL LEU THR ILE ILE SER LEU ILE SEQRES 3 A 39 ILE LEU ILE MET LEU TRP GLN LYS LYS PRO ARG TYR GLU SEQRES 1 B 39 GLY HIS SER LEU PRO PHE LYS VAL VAL VAL ILE SER ALA SEQRES 2 B 39 ILE LEU ALA LEU VAL VAL LEU THR ILE ILE SER LEU ILE SEQRES 3 B 39 ILE LEU ILE MET LEU TRP GLN LYS LYS PRO ARG TYR GLU HELIX 1 1 PRO A 5 GLN A 33 1 29 HELIX 2 2 PRO B 5 LYS B 34 1 30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1