HEADER PROTEIN BINDING 01-DEC-10 2L72 TITLE SOLUTION STRUCTURE AND DYNAMICS OF ADF FROM TOXOPLASMA GONDII (TGADF) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN DEPOLYMERIZING FACTOR, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TGADF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET16B+ KEYWDS ADF/COFILIN, TGADF, ACTIN BINDING, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR P.P.PATHAK,V.K.SHUKLA,R.YADAV,A.JAIN,S.SRIVASTAVA,S.TRIPATHI, AUTHOR 2 S.V.S.R.K.PULAVARTI,A.ARORA REVDAT 3 01-MAY-24 2L72 1 REMARK SEQADV REVDAT 2 28-DEC-11 2L72 1 JRNL REVDAT 1 17-AUG-11 2L72 0 JRNL AUTH R.YADAV,P.P.PATHAK,V.K.SHUKLA,A.JAIN,S.SRIVASTAVA, JRNL AUTH 2 S.TRIPATHI,S.V.S.R.K.PULAVARTI,S.MEHTA,L.D.SIBLEY,A.ARORA JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF ADF FROM TOXOPLASMA JRNL TITL 2 GONDII JRNL REF J.STRUCT.BIOL. V. 176 97 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 21820516 JRNL DOI 10.1016/J.JSB.2011.07.011 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNSSOLVE 1.2 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNSSOLVE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000102038. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM SODIUM PHOSPHATE; 50MM REMARK 210 SODIUM CHLORIDE; 0.1% SODIUM REMARK 210 AZIDE; 1MM DTT; 1MM AEBSF REMARK 210 PROTEASE INHIBITOR; 0.8MM [U-100% REMARK 210 15N] TGADF; 93% H2O/7% D2O; REMARK 210 20MM SODIUM PHOSPHATE; 50MM REMARK 210 SODIUM CHLORIDE; 0.1% SODIUM REMARK 210 AZIDE; 1MM DTT; 1MM AEBSF REMARK 210 PROTEASE INHIBITOR; 0.8MM [U-100% REMARK 210 13C; U-100% 15N] TGADF; 93% H2O/ REMARK 210 7% D2O; 20MM SODIUM PHOSPHATE; REMARK 210 50MM SODIUM CHLORIDE; 0.1% REMARK 210 SODIUM AZIDE; 1MM DTT; 1MM AEBSF REMARK 210 PROTEASE INHIBITOR; 0.8MM [U-100% REMARK 210 13C; U-100% 15N] TGADF; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H REMARK 210 -13C(ALIPHATIC) NOESY; 3D 1H- REMARK 210 13C(AROMATIC) NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.4, NMRDRAW, CYANA 3.0 REMARK 210 METHOD USED : CNS WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 54 44.22 -101.04 REMARK 500 1 ASN A 56 -46.36 68.82 REMARK 500 1 PRO A 80 -178.86 -68.70 REMARK 500 1 ALA A 101 179.28 -55.52 REMARK 500 1 PRO A 116 89.56 -67.38 REMARK 500 2 THR A 34 19.31 56.54 REMARK 500 2 PRO A 80 -151.89 -77.71 REMARK 500 2 ASP A 99 -145.46 -33.61 REMARK 500 2 ALA A 101 -175.44 -55.73 REMARK 500 3 PRO A 80 -165.97 -76.43 REMARK 500 3 ALA A 101 179.43 -54.81 REMARK 500 3 PRO A 116 107.89 -56.28 REMARK 500 4 LEU A 53 85.94 -152.27 REMARK 500 4 ASN A 56 -47.28 67.12 REMARK 500 4 ALA A 101 -179.35 -56.46 REMARK 500 5 ALA A 101 177.99 -55.84 REMARK 500 5 MET A 111 47.31 -77.63 REMARK 500 5 LEU A 117 -71.57 -72.12 REMARK 500 6 LYS A 22 27.75 45.13 REMARK 500 6 ASN A 56 14.16 -168.53 REMARK 500 6 ALA A 101 178.48 -55.57 REMARK 500 6 GLU A 110 -149.66 -98.12 REMARK 500 6 LEU A 117 -98.26 -79.23 REMARK 500 7 ASN A 56 -25.67 76.33 REMARK 500 7 ALA A 101 177.66 -57.22 REMARK 500 7 MET A 111 -4.29 71.18 REMARK 500 8 ALA A 52 -73.99 -96.22 REMARK 500 8 PRO A 54 48.31 -85.21 REMARK 500 8 PRO A 80 -170.99 -69.21 REMARK 500 8 ASP A 99 -145.94 -34.69 REMARK 500 8 ALA A 101 -177.14 -56.97 REMARK 500 8 PRO A 116 91.24 -68.01 REMARK 500 9 THR A 34 -10.13 79.48 REMARK 500 9 PRO A 80 -166.76 -74.06 REMARK 500 9 ALA A 101 179.34 -55.35 REMARK 500 9 PRO A 116 88.45 -66.65 REMARK 500 9 LEU A 117 -71.02 -77.66 REMARK 500 10 ALA A 101 177.28 -55.48 REMARK 500 10 ALA A 103 5.91 -69.30 REMARK 500 10 HIS A 109 -158.60 -112.19 REMARK 500 10 MET A 111 -45.31 79.61 REMARK 500 10 PRO A 116 100.18 -59.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17278 RELATED DB: BMRB DBREF 2L72 A 1 118 UNP B9Q2C8 B9Q2C8_TOXGO 1 118 SEQADV 2L72 MET A -20 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 GLY A -19 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -18 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -17 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -16 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -15 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -14 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -13 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -12 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -11 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -10 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -9 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 SER A -8 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 SER A -7 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 GLY A -6 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A -5 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 ILE A -4 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 GLU A -3 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 GLY A -2 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 ARG A -1 UNP B9Q2C8 EXPRESSION TAG SEQADV 2L72 HIS A 0 UNP B9Q2C8 EXPRESSION TAG SEQRES 1 A 139 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 139 SER GLY HIS ILE GLU GLY ARG HIS MET ALA SER GLY MET SEQRES 3 A 139 GLY VAL ASP GLU ASN CYS VAL ALA ARG PHE ASN GLU LEU SEQRES 4 A 139 LYS ILE ARG LYS THR VAL LYS TRP ILE VAL PHE LYS ILE SEQRES 5 A 139 GLU ASN THR LYS ILE VAL VAL GLU LYS ASP GLY LYS GLY SEQRES 6 A 139 ASN ALA ASP GLU PHE ARG GLY ALA LEU PRO ALA ASN ASP SEQRES 7 A 139 CYS ARG PHE GLY VAL TYR ASP CYS GLY ASN LYS ILE GLN SEQRES 8 A 139 PHE VAL LEU TRP CYS PRO ASP ASN ALA PRO VAL LYS PRO SEQRES 9 A 139 ARG MET THR TYR ALA SER SER LYS ASP ALA LEU LEU LYS SEQRES 10 A 139 LYS LEU ASP GLY ALA THR ALA VAL ALA LEU GLU ALA HIS SEQRES 11 A 139 GLU MET GLY ASP LEU ALA PRO LEU ALA HELIX 1 1 ASP A 8 LYS A 19 1 12 HELIX 2 2 GLY A 44 LEU A 53 1 10 HELIX 3 3 PRO A 80 ASP A 99 1 20 SHEET 1 A 6 GLY A 6 VAL A 7 0 SHEET 2 A 6 LYS A 35 GLY A 42 1 O ILE A 36 N GLY A 6 SHEET 3 A 6 TRP A 26 GLU A 32 -1 N LYS A 30 O VAL A 37 SHEET 4 A 6 PHE A 60 ASP A 64 -1 O PHE A 60 N PHE A 29 SHEET 5 A 6 ILE A 69 TRP A 74 -1 O VAL A 72 N GLY A 61 SHEET 6 A 6 ALA A 105 ALA A 108 1 O LEU A 106 N LEU A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1