HEADER OXIDOREDUCTASE REGULATOR 02-DEC-10 2L73 TITLE STRUCTURE OF THE NOXO1B PX DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH OXIDASE ORGANIZER 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PX DOMAIN, RESIDUES 1-144; COMPND 5 SYNONYM: NOXO1B, NADPH OXIDASE REGULATORY PROTEIN, NOX ORGANIZER 1, COMPND 6 NOX-ORGANIZING PROTEIN 1, SH3 AND PX DOMAIN-CONTAINING PROTEIN 5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P KEYWDS CELL MEMBRANE, PX DOMAIN, OXIDOREDUCTASE REGULATOR EXPDTA SOLUTION NMR NUMMDL 14 AUTHOR N.Y.DAVIS,L.C.MCPHAIL,D.A.HORITA REVDAT 1 21-DEC-11 2L73 0 JRNL AUTH N.Y.DAVIS,L.C.MCPHAIL,D.A.HORITA JRNL TITL STRUCTURE OF THE NOXO1B PX DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-10. REMARK 100 THE RCSB ID CODE IS RCSB102039. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM [U-13C; U-15N; U-2H] REMARK 210 PROTEIN; 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 14 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-14 REMARK 465 RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 112 H ILE A 115 1.35 REMARK 500 O LEU A 15 H ILE A 137 1.36 REMARK 500 H GLN A 17 O ARG A 135 1.36 REMARK 500 HH21 ARG A 64 OG SER A 66 1.37 REMARK 500 HZ3 LYS A 53 OE1 GLU A 59 1.37 REMARK 500 HZ1 LYS A 50 OE2 GLU A 54 1.37 REMARK 500 O GLU A 59 HZ2 LYS A 72 1.38 REMARK 500 HH21 ARG A 39 O LEU A 124 1.38 REMARK 500 HE1 TRP A 30 OG1 THR A 36 1.39 REMARK 500 HH21 ARG A 29 OD2 ASP A 35 1.42 REMARK 500 O PRO A 113 HG1 THR A 116 1.43 REMARK 500 HZ2 LYS A 49 OH TYR A 98 1.43 REMARK 500 O VAL A 28 HG1 THR A 36 1.44 REMARK 500 O GLY A 3 HH11 ARG A 5 1.44 REMARK 500 O PRO A 131 HG SER A 134 1.45 REMARK 500 O ALA A 14 H ALA A 25 1.45 REMARK 500 O LEU A 48 HG1 THR A 51 1.46 REMARK 500 H PHE A 24 O ARG A 40 1.46 REMARK 500 O ARG A 39 HE21 GLN A 122 1.48 REMARK 500 HE ARG A 29 OD1 ASP A 35 1.48 REMARK 500 OD2 ASP A 75 HH12 ARG A 91 1.50 REMARK 500 O ARG A 64 HH11 ARG A 65 1.50 REMARK 500 O PHE A 26 H VAL A 38 1.52 REMARK 500 OE1 GLU A 96 HH22 ARG A 100 1.52 REMARK 500 HH11 ARG A 40 OE1 GLU A 44 1.53 REMARK 500 H GLY A 12 OE1 GLU A 96 1.54 REMARK 500 O LEU A 70 H LYS A 72 1.57 REMARK 500 O ARG A 101 HG1 THR A 105 1.57 REMARK 500 OD1 ASP A 75 HH22 ARG A 91 1.57 REMARK 500 H PHE A 26 O VAL A 38 1.58 REMARK 500 O LEU A 52 HG1 THR A 55 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 LYS A 19 O - C - N ANGL. DEV. = -9.6 DEGREES REMARK 500 5 LYS A 19 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 13 ILE A 18 CA - C - N ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 19 -170.12 -14.64 REMARK 500 1 ARG A 20 8.23 -65.41 REMARK 500 1 GLU A 59 -44.85 -25.02 REMARK 500 1 SER A 66 39.00 -90.40 REMARK 500 1 PRO A 71 44.02 -71.86 REMARK 500 1 LYS A 72 -148.63 47.62 REMARK 500 1 LEU A 79 -71.80 50.15 REMARK 500 1 VAL A 82 -80.36 41.44 REMARK 500 1 SER A 112 151.52 -46.58 REMARK 500 1 PRO A 131 149.11 -30.15 REMARK 500 2 ILE A 18 -162.58 -117.90 REMARK 500 2 LYS A 19 179.65 -24.60 REMARK 500 2 ARG A 20 17.96 -63.30 REMARK 500 2 GLU A 59 -36.99 -36.07 REMARK 500 2 SER A 66 75.05 -68.27 REMARK 500 2 LYS A 72 174.67 153.41 REMARK 500 2 ARG A 81 80.33 -54.32 REMARK 500 2 VAL A 82 -65.46 68.99 REMARK 500 2 SER A 112 150.92 -45.35 REMARK 500 3 ILE A 18 -161.49 -120.25 REMARK 500 3 LYS A 19 166.73 -25.19 REMARK 500 3 ARG A 20 10.19 -62.80 REMARK 500 3 PHE A 56 69.10 -119.00 REMARK 500 3 GLU A 59 -6.46 -47.70 REMARK 500 3 SER A 66 -40.97 49.76 REMARK 500 3 LYS A 72 36.82 -66.18 REMARK 500 3 LEU A 78 56.95 -69.45 REMARK 500 3 SER A 112 151.53 -46.63 REMARK 500 3 GLU A 142 3.59 49.22 REMARK 500 3 GLU A 143 -146.13 -125.68 REMARK 500 4 ILE A 18 -163.90 -120.59 REMARK 500 4 LYS A 19 -173.86 -11.75 REMARK 500 4 ARG A 20 9.30 -66.02 REMARK 500 4 VAL A 58 -54.52 -157.17 REMARK 500 4 GLU A 59 -67.73 15.43 REMARK 500 4 SER A 66 -1.80 -58.99 REMARK 500 4 PRO A 71 49.85 -71.57 REMARK 500 4 LEU A 79 -158.78 53.09 REMARK 500 4 ARG A 81 70.44 46.38 REMARK 500 4 VAL A 82 -122.59 22.13 REMARK 500 4 GLU A 142 70.99 -55.53 REMARK 500 5 ILE A 18 -163.11 -119.22 REMARK 500 5 LYS A 19 -173.70 -7.60 REMARK 500 5 ARG A 20 10.03 -68.72 REMARK 500 5 VAL A 58 -85.33 -159.26 REMARK 500 5 GLU A 59 -81.00 46.02 REMARK 500 5 ARG A 65 48.14 -89.87 REMARK 500 5 PRO A 71 -164.23 -67.47 REMARK 500 5 LYS A 72 -103.26 -65.33 REMARK 500 5 LEU A 78 -65.62 50.16 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 19 ARG A 20 3 -149.39 REMARK 500 LYS A 19 ARG A 20 6 -144.12 REMARK 500 ILE A 18 LYS A 19 7 -144.90 REMARK 500 LYS A 19 ARG A 20 7 137.09 REMARK 500 LYS A 19 ARG A 20 13 140.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 64 0.08 SIDE CHAIN REMARK 500 3 ARG A 87 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 LYS A 19 16.00 REMARK 500 1 ARG A 20 -10.28 REMARK 500 1 ARG A 29 11.62 REMARK 500 1 SER A 66 11.02 REMARK 500 2 SER A 66 13.91 REMARK 500 2 LEU A 74 -14.68 REMARK 500 4 LYS A 19 18.50 REMARK 500 5 LYS A 19 18.32 REMARK 500 5 ARG A 29 11.80 REMARK 500 7 ILE A 18 15.09 REMARK 500 7 LYS A 19 -18.19 REMARK 500 10 ARG A 20 -11.04 REMARK 500 13 LYS A 19 -17.91 REMARK 500 13 LEU A 21 -10.86 REMARK 500 14 LEU A 74 -14.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16749 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITED SEQUENCE CORRESPONDS TO THE SEQUENCE OF ISOFORM 3 OF REMARK 999 UNIPROT ENTRY, NOXO1_HUMAN. DBREF 2L73 A 1 144 UNP Q8NFA2 NOXO1_HUMAN 1 144 SEQADV 2L73 GLY A -4 UNP Q8NFA2 EXPRESSION TAG SEQADV 2L73 PRO A -3 UNP Q8NFA2 EXPRESSION TAG SEQADV 2L73 LEU A -2 UNP Q8NFA2 EXPRESSION TAG SEQADV 2L73 GLY A -1 UNP Q8NFA2 EXPRESSION TAG SEQADV 2L73 SER A 0 UNP Q8NFA2 EXPRESSION TAG SEQRES 1 A 149 GLY PRO LEU GLY SER MET ALA GLY PRO ARG TYR PRO VAL SEQRES 2 A 149 SER VAL GLN GLY ALA ALA LEU VAL GLN ILE LYS ARG LEU SEQRES 3 A 149 GLN THR PHE ALA PHE SER VAL ARG TRP SER ASP GLY SER SEQRES 4 A 149 ASP THR PHE VAL ARG ARG SER TRP ASP GLU PHE ARG GLN SEQRES 5 A 149 LEU LYS LYS THR LEU LYS GLU THR PHE PRO VAL GLU ALA SEQRES 6 A 149 GLY LEU LEU ARG ARG SER ASP ARG VAL LEU PRO LYS LEU SEQRES 7 A 149 LEU ASP ALA PRO LEU LEU GLY ARG VAL GLY ARG THR SER SEQRES 8 A 149 ARG GLY LEU ALA ARG LEU GLN LEU LEU GLU THR TYR SER SEQRES 9 A 149 ARG ARG LEU LEU ALA THR ALA GLU ARG VAL ALA ARG SER SEQRES 10 A 149 PRO THR ILE THR GLY PHE PHE ALA PRO GLN PRO LEU ASP SEQRES 11 A 149 LEU GLU PRO ALA LEU PRO PRO GLY SER ARG VAL ILE LEU SEQRES 12 A 149 PRO THR PRO GLU GLU GLN HELIX 1 1 TRP A 42 PHE A 56 1 15 HELIX 2 2 PRO A 57 GLY A 61 5 5 HELIX 3 3 GLY A 83 ALA A 106 1 24 HELIX 4 4 ALA A 106 SER A 112 1 7 HELIX 5 5 SER A 112 ALA A 120 1 9 HELIX 6 6 GLN A 122 GLU A 127 5 6 SHEET 1 A 4 ASP A 35 SER A 41 0 SHEET 2 A 4 THR A 23 TRP A 30 -1 N PHE A 24 O ARG A 40 SHEET 3 A 4 PRO A 7 VAL A 16 -1 N ALA A 14 O ALA A 25 SHEET 4 A 4 VAL A 136 ILE A 137 -1 O ILE A 137 N LEU A 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1