HEADER ALLERGEN 23-DEC-10 2L7U TITLE STRUCTURE OF CEL-PEP-RAGE V DOMAIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG-LIKE V-TYPE DOMAIN RESIDUES 23-125; COMPND 5 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SERUM ALBUMIN PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: SEQUENCE DATABASE RESIDUES 148-154; COMPND 11 SYNONYM: BSA; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGER, RAGE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 12 ORGANISM_COMMON: BOVINE; SOURCE 13 ORGANISM_TAXID: 9913 KEYWDS V DOMAIN, ALLERGEN, CLEAVAGE ON PAIR OF BASIC RESIDUES, LIPID- KEYWDS 2 BINDING, METAL-BINDING, PHOSPHOPROTEIN, SECRETED EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR J.XUE,V.RAI,A.SCHMIDT,S.FROLOV,S.REVERDATTO,D.SINGER,S.CHABIERSKI, AUTHOR 2 J.XIE,D.BURZ,A.SHEKHTMAN,R.HOFFMAN REVDAT 4 29-NOV-23 2L7U 1 REMARK SEQADV LINK ATOM REVDAT 3 30-MAY-18 2L7U 1 REMARK SEQRES HET HETNAM REVDAT 3 2 1 FORMUL LINK ATOM REVDAT 2 19-JUN-13 2L7U 1 JRNL VERSN REVDAT 1 18-MAY-11 2L7U 0 JRNL AUTH J.XUE,V.RAI,D.SINGER,S.CHABIERSKI,J.XIE,S.REVERDATTO, JRNL AUTH 2 D.S.BURZ,A.M.SCHMIDT,R.HOFFMANN,A.SHEKHTMAN JRNL TITL ADVANCED GLYCATION END PRODUCT RECOGNITION BY THE RECEPTOR JRNL TITL 2 FOR AGES. JRNL REF STRUCTURE V. 19 722 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21565706 JRNL DOI 10.1016/J.STR.2011.02.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000102065. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 130 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1 MM [U-100% 13C; U-100% 15N] REMARK 210 V DOMAIN, 0.3 MM CEL-PEP, 90% REMARK 210 H2O/10% D2O; 0.32 MM [U-100% 13C; REMARK 210 U-100% 15N] V DOMAIN, 1 MM CEL- REMARK 210 PEP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HN(CA)CO; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 102.04 61.76 REMARK 500 1 PRO A 22 -164.22 -69.85 REMARK 500 1 PRO A 26 -85.19 -69.77 REMARK 500 1 THR A 38 -29.66 -179.47 REMARK 500 1 PRO A 46 0.31 -69.76 REMARK 500 1 VAL A 55 -99.68 -130.13 REMARK 500 1 ALA A 68 100.86 -168.21 REMARK 500 1 TYR A 98 -79.15 -60.64 REMARK 500 1 LYS A 103 68.50 -152.34 REMARK 500 1 PHE B 3 -167.20 60.04 REMARK 500 1 ASP B 6 115.97 -172.64 REMARK 500 2 SER A 2 112.98 65.05 REMARK 500 2 PRO A 22 -164.46 -69.80 REMARK 500 2 PRO A 26 -87.40 -69.76 REMARK 500 2 THR A 38 -29.53 176.74 REMARK 500 2 VAL A 55 -97.29 -126.27 REMARK 500 2 ALA A 68 103.15 -168.61 REMARK 500 2 TYR A 98 -81.02 -70.79 REMARK 500 2 PRO A 104 -178.14 -69.71 REMARK 500 2 PHE B 3 -165.31 -174.75 REMARK 500 3 SER A 2 122.17 66.29 REMARK 500 3 PRO A 22 -164.79 -69.80 REMARK 500 3 PRO A 26 -84.84 -69.83 REMARK 500 3 THR A 38 -31.03 179.83 REMARK 500 3 PRO A 46 1.38 -69.72 REMARK 500 3 GLN A 47 69.49 -118.99 REMARK 500 3 VAL A 55 -98.50 -125.50 REMARK 500 3 ALA A 68 100.26 -170.75 REMARK 500 3 TYR A 98 -80.54 -63.59 REMARK 500 3 PRO A 101 -179.48 -69.82 REMARK 500 3 PRO A 104 -176.01 -69.74 REMARK 500 3 PHE B 3 -163.92 50.83 REMARK 500 3 ASP B 6 57.66 -91.22 REMARK 500 4 SER A 2 115.43 -179.66 REMARK 500 4 LYS A 19 101.76 -51.82 REMARK 500 4 PRO A 22 -161.43 -69.69 REMARK 500 4 LYS A 24 167.48 -45.84 REMARK 500 4 PRO A 26 87.74 -69.75 REMARK 500 4 THR A 38 -29.29 -179.24 REMARK 500 4 PRO A 46 0.94 -69.77 REMARK 500 4 VAL A 55 -98.38 -128.79 REMARK 500 4 ALA A 68 100.92 -163.79 REMARK 500 4 TYR A 98 -82.11 -63.50 REMARK 500 4 PHE B 3 -164.85 51.91 REMARK 500 4 ALA B 5 104.86 -48.20 REMARK 500 4 ASP B 6 64.04 -151.36 REMARK 500 5 SER A 2 79.81 -107.01 REMARK 500 5 PRO A 22 -165.37 -69.76 REMARK 500 5 PRO A 26 -86.81 -69.78 REMARK 500 5 THR A 38 -30.32 -179.50 REMARK 500 REMARK 500 THIS ENTRY HAS 289 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17378 RELATED DB: BMRB DBREF 2L7U A 3 105 UNP Q15109 RAGE_HUMAN 23 125 DBREF 2L7U B 1 7 UNP P02769 ALBU_BOVIN 148 154 SEQADV 2L7U GLY A 1 UNP Q15109 EXPRESSION TAG SEQADV 2L7U SER A 2 UNP Q15109 EXPRESSION TAG SEQRES 1 A 105 GLY SER ALA GLN ASN ILE THR ALA ARG ILE GLY GLU PRO SEQRES 2 A 105 LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS PRO PRO SEQRES 3 A 105 GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG THR GLU SEQRES 4 A 105 ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY PRO TRP SEQRES 5 A 105 ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER LEU PHE SEQRES 6 A 105 LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE PHE ARG SEQRES 7 A 105 CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR LYS SER SEQRES 8 A 105 ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY LYS PRO SEQRES 9 A 105 GLU SEQRES 1 B 7 ASP GLU PHE KPI ALA ASP GLU MODRES 2L7U KPI B 4 LYS NZ-(1-CARBOXYETHYL)-LYSINE HET KPI B 4 29 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID FORMUL 2 KPI C9 H16 N2 O4 HELIX 1 1 GLY A 70 ASP A 73 5 4 SHEET 1 A 5 GLN A 4 THR A 7 0 SHEET 2 A 5 GLU A 88 ARG A 96 1 O ARG A 94 N ILE A 6 SHEET 3 A 5 GLY A 75 MET A 82 -1 N PHE A 77 O TYR A 93 SHEET 4 A 5 GLU A 30 THR A 35 -1 N LYS A 32 O ARG A 78 SHEET 5 A 5 LYS A 42 LEU A 44 -1 O LYS A 42 N LEU A 33 SHEET 1 B 3 GLU A 12 LEU A 16 0 SHEET 2 B 3 LEU A 64 VAL A 69 -1 O VAL A 69 N GLU A 12 SHEET 3 B 3 ARG A 57 VAL A 58 -1 N ARG A 57 O PHE A 65 SSBOND 1 CYS A 18 CYS A 79 1555 1555 1.86 LINK C PHE B 3 N KPI B 4 1555 1555 1.25 LINK C KPI B 4 N ALA B 5 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1