HEADER HYDROLASE 07-JAN-11 2L8B TITLE TRAI (381-569) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRAI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 381-569; COMPND 5 SYNONYM: DNA HELICASE I; COMPND 6 EC: 3.6.4.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ECOK12F104, TRAI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24A KEYWDS RECD, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.T.WRIGHT,M.U.RATHTHAGALA,S.EDWARDS,S.KRUEGER,J.F.SCHILDBACH REVDAT 4 08-FEB-23 2L8B 1 REMARK REVDAT 3 15-AUG-12 2L8B 1 JRNL REVDAT 2 23-MAY-12 2L8B 1 JRNL REVDAT 1 11-JAN-12 2L8B 0 JRNL AUTH N.T.WRIGHT,M.RATHTHAGALA,C.W.HEMMIS,S.EDWARDS,J.E.CURTIS, JRNL AUTH 2 S.KRUEGER,J.F.SCHILDBACH JRNL TITL SOLUTION STRUCTURE AND SMALL ANGLE SCATTERING ANALYSIS OF JRNL TITL 2 TRAI (381-569). JRNL REF PROTEINS V. 80 2250 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22611034 JRNL DOI 10.1002/PROT.24114 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L8B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000102082. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 0.04 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM TRIS, 20 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 10 % D2O, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D H(CCO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 405 142.81 -35.54 REMARK 500 1 LYS A 411 57.21 -157.23 REMARK 500 1 ARG A 415 63.11 -159.38 REMARK 500 1 ASP A 429 -90.25 -62.89 REMARK 500 1 ARG A 430 -61.61 -171.92 REMARK 500 1 LEU A 433 96.94 -165.04 REMARK 500 1 ALA A 468 -162.07 -58.00 REMARK 500 1 LYS A 477 -148.05 -102.92 REMARK 500 1 ARG A 481 -26.10 -175.07 REMARK 500 1 LEU A 486 -81.01 -67.36 REMARK 500 1 ILE A 487 -60.55 -175.63 REMARK 500 1 ARG A 490 -63.42 -143.39 REMARK 500 1 THR A 500 107.19 -55.32 REMARK 500 1 HIS A 528 -135.35 -93.02 REMARK 500 1 THR A 535 -168.45 -125.55 REMARK 500 1 SER A 537 17.98 -140.90 REMARK 500 1 ALA A 553 6.85 -69.83 REMARK 500 1 TYR A 558 -81.06 -87.50 REMARK 500 1 ARG A 559 -64.40 -155.49 REMARK 500 1 ARG A 566 79.82 -107.10 REMARK 500 1 ALA A 568 22.42 -157.52 REMARK 500 2 ASP A 388 -168.69 -115.64 REMARK 500 2 GLU A 389 87.86 -61.51 REMARK 500 2 VAL A 405 148.05 -39.07 REMARK 500 2 LYS A 411 67.61 -157.50 REMARK 500 2 ASP A 429 -85.79 -64.26 REMARK 500 2 ARG A 430 -55.88 -173.44 REMARK 500 2 GLN A 439 39.26 -171.41 REMARK 500 2 ALA A 468 -161.93 -58.78 REMARK 500 2 LYS A 477 -143.42 -121.08 REMARK 500 2 GLN A 478 88.24 47.96 REMARK 500 2 LEU A 482 67.97 -170.95 REMARK 500 2 LEU A 486 -81.02 -94.85 REMARK 500 2 ILE A 487 -34.38 161.16 REMARK 500 2 ARG A 490 -72.21 -145.81 REMARK 500 2 MET A 497 -177.25 -64.80 REMARK 500 2 GLU A 511 -92.78 -38.89 REMARK 500 2 LYS A 512 -38.59 -179.02 REMARK 500 2 HIS A 528 -130.47 -110.88 REMARK 500 2 SER A 537 59.36 -140.61 REMARK 500 2 GLN A 539 -87.15 -53.78 REMARK 500 2 ARG A 540 -81.23 -108.77 REMARK 500 2 THR A 541 -30.16 -139.75 REMARK 500 2 ALA A 553 0.07 -69.99 REMARK 500 2 ASN A 556 138.99 -172.53 REMARK 500 2 TYR A 558 -79.61 -73.17 REMARK 500 2 ARG A 559 -70.31 -157.81 REMARK 500 2 ALA A 568 -51.06 -160.72 REMARK 500 3 THR A 406 100.28 -54.58 REMARK 500 3 SER A 412 155.30 -49.80 REMARK 500 REMARK 500 THIS ENTRY HAS 458 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 393 0.31 SIDE CHAIN REMARK 500 1 ARG A 397 0.30 SIDE CHAIN REMARK 500 1 ARG A 404 0.30 SIDE CHAIN REMARK 500 1 ARG A 415 0.21 SIDE CHAIN REMARK 500 1 ARG A 430 0.23 SIDE CHAIN REMARK 500 1 ARG A 446 0.32 SIDE CHAIN REMARK 500 1 ARG A 448 0.24 SIDE CHAIN REMARK 500 1 ARG A 457 0.28 SIDE CHAIN REMARK 500 1 ARG A 461 0.20 SIDE CHAIN REMARK 500 1 ARG A 470 0.24 SIDE CHAIN REMARK 500 1 ARG A 471 0.18 SIDE CHAIN REMARK 500 1 ARG A 481 0.21 SIDE CHAIN REMARK 500 1 ARG A 490 0.30 SIDE CHAIN REMARK 500 1 ARG A 491 0.32 SIDE CHAIN REMARK 500 1 ARG A 527 0.29 SIDE CHAIN REMARK 500 1 ARG A 540 0.29 SIDE CHAIN REMARK 500 1 ARG A 559 0.30 SIDE CHAIN REMARK 500 1 ARG A 566 0.28 SIDE CHAIN REMARK 500 2 ARG A 393 0.29 SIDE CHAIN REMARK 500 2 ARG A 397 0.28 SIDE CHAIN REMARK 500 2 ARG A 404 0.31 SIDE CHAIN REMARK 500 2 ARG A 415 0.32 SIDE CHAIN REMARK 500 2 ARG A 430 0.30 SIDE CHAIN REMARK 500 2 ARG A 446 0.27 SIDE CHAIN REMARK 500 2 ARG A 448 0.32 SIDE CHAIN REMARK 500 2 ARG A 457 0.23 SIDE CHAIN REMARK 500 2 ARG A 461 0.21 SIDE CHAIN REMARK 500 2 ARG A 470 0.21 SIDE CHAIN REMARK 500 2 ARG A 471 0.29 SIDE CHAIN REMARK 500 2 ARG A 481 0.31 SIDE CHAIN REMARK 500 2 ARG A 490 0.30 SIDE CHAIN REMARK 500 2 ARG A 491 0.31 SIDE CHAIN REMARK 500 2 ARG A 527 0.28 SIDE CHAIN REMARK 500 2 ARG A 540 0.31 SIDE CHAIN REMARK 500 2 ARG A 559 0.23 SIDE CHAIN REMARK 500 2 ARG A 566 0.28 SIDE CHAIN REMARK 500 3 ARG A 393 0.32 SIDE CHAIN REMARK 500 3 ARG A 397 0.32 SIDE CHAIN REMARK 500 3 ARG A 404 0.26 SIDE CHAIN REMARK 500 3 ARG A 415 0.32 SIDE CHAIN REMARK 500 3 ARG A 430 0.31 SIDE CHAIN REMARK 500 3 ARG A 446 0.16 SIDE CHAIN REMARK 500 3 ARG A 448 0.30 SIDE CHAIN REMARK 500 3 ARG A 457 0.14 SIDE CHAIN REMARK 500 3 ARG A 461 0.29 SIDE CHAIN REMARK 500 3 ARG A 471 0.18 SIDE CHAIN REMARK 500 3 ARG A 481 0.32 SIDE CHAIN REMARK 500 3 ARG A 490 0.23 SIDE CHAIN REMARK 500 3 ARG A 491 0.15 SIDE CHAIN REMARK 500 3 ARG A 527 0.27 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 357 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16971 RELATED DB: BMRB DBREF 2L8B A 381 569 UNP P14565 TRAI1_ECOLI 381 569 SEQRES 1 A 189 THR SER GLY ILE HIS VAL LEU ASP GLU LEU SER VAL ARG SEQRES 2 A 189 ALA LEU SER ARG ASP ILE MET LYS GLN ASN ARG VAL THR SEQRES 3 A 189 VAL HIS PRO GLU LYS SER VAL PRO ARG THR ALA GLY TYR SEQRES 4 A 189 SER ASP ALA VAL SER VAL LEU ALA GLN ASP ARG PRO SER SEQRES 5 A 189 LEU ALA ILE VAL SER GLY GLN GLY GLY ALA ALA GLY GLN SEQRES 6 A 189 ARG GLU ARG VAL ALA GLU LEU VAL MET MET ALA ARG GLU SEQRES 7 A 189 GLN GLY ARG GLU VAL GLN ILE ILE ALA ALA ASP ARG ARG SEQRES 8 A 189 SER GLN MET ASN MET LYS GLN ASP GLU ARG LEU SER GLY SEQRES 9 A 189 GLU LEU ILE THR GLY ARG ARG GLN LEU LEU GLU GLY MET SEQRES 10 A 189 ALA PHE THR PRO GLY SER THR VAL ILE VAL ASP GLN GLY SEQRES 11 A 189 GLU LYS LEU SER LEU LYS GLU THR LEU THR LEU LEU ASP SEQRES 12 A 189 GLY ALA ALA ARG HIS ASN VAL GLN VAL LEU ILE THR ASP SEQRES 13 A 189 SER GLY GLN ARG THR GLY THR GLY SER ALA LEU MET ALA SEQRES 14 A 189 MET LYS ASP ALA GLY VAL ASN THR TYR ARG TRP GLN GLY SEQRES 15 A 189 GLY GLU GLN ARG PRO ALA THR HELIX 1 1 GLU A 389 ARG A 404 1 16 HELIX 2 2 HIS A 408 SER A 412 5 5 HELIX 3 3 THR A 416 ARG A 430 1 15 HELIX 4 4 ALA A 442 GLN A 459 1 18 HELIX 5 5 ARG A 470 LYS A 477 1 8 HELIX 6 6 LYS A 512 HIS A 528 1 17 HELIX 7 7 THR A 543 ALA A 553 1 11 SHEET 1 A 4 LEU A 433 ALA A 434 0 SHEET 2 A 4 VAL A 532 ASP A 536 1 O ILE A 534 N ALA A 434 SHEET 3 A 4 THR A 504 GLN A 509 1 N VAL A 505 O LEU A 533 SHEET 4 A 4 VAL A 463 ILE A 466 1 N GLN A 464 O ILE A 506 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1