HEADER DNA BINDING PROTEIN 11-JAN-11 2L8E TITLE SOLUTION NMR STRUCTURE OF FCS DOMAIN OF HUMAN POLYHOMEOTIC HOMOLOG 1 TITLE 2 (HPH1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHOMEOTIC-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FCS-TYPE ZINC FINGER DOMAIN RESIDUES 783-828; COMPND 5 SYNONYM: HPH1, EARLY DEVELOPMENT REGULATORY PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHC1, EDR1, PH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR U.ILANGOVAN,C.KIM REVDAT 2 01-MAY-24 2L8E 1 REMARK SEQADV LINK REVDAT 1 21-DEC-11 2L8E 0 JRNL AUTH R.WANG,U.ILANGOVAN,C.KIM JRNL TITL 1H, 15N AND 13C ASSIGNED CHEMICAL SHIFTS OF FCS DOMAIN FROM JRNL TITL 2 HUMAN POLYHOMEOTIC HOMOLOG 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, ARIA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000102085. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.050 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-100% 15N] ZN BOUND FCS REMARK 210 DOMAIN OF HPH1, 95% H2O/5% D2O; REMARK 210 1.5 MM [U-95% 13C; U-95% 15N] ZN REMARK 210 BOUND FCS DOMAIN OF HPH1, 95% REMARK 210 H2O/5% D2O; 1.5 MM [U-10% 13C; U- REMARK 210 99% 15N] ZN BOUND FCS DOMAIN OF REMARK 210 HPH1, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNHA; 3D 1H REMARK 210 -15N NOESY; 3D 1H-15N TOCSY; 2D REMARK 210 1H-13C HSQC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; CT-HSQC; HBCBCGCDHDGP; REMARK 210 HBCBCGCDCEHEGP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, TOPSPIN REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 34.68 -93.92 REMARK 500 1 ASP A 785 44.07 -89.28 REMARK 500 1 LYS A 793 -23.66 73.92 REMARK 500 1 GLU A 801 12.88 -62.92 REMARK 500 1 TYR A 802 -89.63 -105.81 REMARK 500 1 ARG A 817 -42.56 -144.30 REMARK 500 1 CYS A 819 -157.79 -68.57 REMARK 500 1 SER A 820 -131.04 -67.87 REMARK 500 2 LEU A 791 41.09 -78.22 REMARK 500 2 ASP A 792 -33.02 177.95 REMARK 500 2 LYS A 794 -76.88 -162.69 REMARK 500 2 GLU A 801 -3.48 -59.26 REMARK 500 2 PHE A 812 54.99 -69.84 REMARK 500 2 ARG A 817 -31.34 -153.91 REMARK 500 2 SER A 820 -154.38 82.75 REMARK 500 3 THR A 2 -48.22 74.98 REMARK 500 3 ARG A 3 -74.28 -87.27 REMARK 500 3 VAL A 784 -56.97 77.33 REMARK 500 3 ALA A 795 33.14 -161.17 REMARK 500 3 CYS A 800 108.09 -44.75 REMARK 500 3 GLU A 801 16.20 -65.01 REMARK 500 3 PHE A 812 45.13 -70.29 REMARK 500 3 SER A 815 124.98 -171.03 REMARK 500 3 ARG A 817 -30.66 -140.10 REMARK 500 3 CYS A 819 -157.41 -68.37 REMARK 500 3 SER A 820 -137.10 -67.49 REMARK 500 4 ALA A 789 -78.24 -72.69 REMARK 500 4 ASN A 796 24.45 -161.79 REMARK 500 4 CYS A 800 102.60 -52.19 REMARK 500 4 GLU A 801 19.13 -67.67 REMARK 500 4 PHE A 812 62.96 -69.33 REMARK 500 4 SER A 815 142.45 73.22 REMARK 500 4 ARG A 817 -32.22 -145.79 REMARK 500 4 SER A 820 -147.86 87.10 REMARK 500 5 ARG A 3 27.19 -151.32 REMARK 500 5 PRO A 787 35.82 -68.03 REMARK 500 5 SER A 788 -159.18 -105.70 REMARK 500 5 ALA A 795 -3.84 66.43 REMARK 500 5 PHE A 812 57.23 -68.93 REMARK 500 5 ARG A 817 -42.25 -143.53 REMARK 500 5 CYS A 819 -158.62 -67.88 REMARK 500 5 SER A 820 -151.81 -67.84 REMARK 500 6 ASP A 785 113.81 66.20 REMARK 500 6 ASP A 792 93.07 -67.84 REMARK 500 6 LYS A 793 -4.85 69.22 REMARK 500 6 LYS A 794 115.70 75.71 REMARK 500 6 ALA A 795 56.73 -167.04 REMARK 500 6 ASN A 796 59.53 -158.19 REMARK 500 6 CYS A 800 103.05 -46.02 REMARK 500 6 GLU A 801 21.16 -69.72 REMARK 500 REMARK 500 THIS ENTRY HAS 172 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 829 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 800 SG REMARK 620 2 CYS A 803 SG 94.1 REMARK 620 3 CYS A 819 SG 90.2 127.5 REMARK 620 4 CYS A 823 SG 124.6 116.0 103.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 829 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17396 RELATED DB: BMRB DBREF 2L8E A 783 828 UNP P78364 PHC1_HUMAN 783 828 SEQADV 2L8E GLY A 1 UNP P78364 EXPRESSION TAG SEQADV 2L8E THR A 2 UNP P78364 EXPRESSION TAG SEQADV 2L8E ARG A 3 UNP P78364 EXPRESSION TAG SEQRES 1 A 49 GLY THR ARG GLY VAL ASP SER PRO SER ALA GLU LEU ASP SEQRES 2 A 49 LYS LYS ALA ASN LEU LEU LYS CYS GLU TYR CYS GLY LYS SEQRES 3 A 49 TYR ALA PRO ALA GLU GLN PHE ARG GLY SER LYS ARG PHE SEQRES 4 A 49 CYS SER MET THR CYS ALA LYS ARG TYR ASN HET ZN A 829 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 SER A 788 ALA A 795 5 8 HELIX 2 2 GLU A 810 PHE A 812 5 3 HELIX 3 3 SER A 820 ASN A 828 1 9 SHEET 1 A 2 LEU A 797 LYS A 799 0 SHEET 2 A 2 TYR A 806 PRO A 808 -1 O ALA A 807 N LEU A 798 LINK SG CYS A 800 ZN ZN A 829 1555 1555 2.32 LINK SG CYS A 803 ZN ZN A 829 1555 1555 2.21 LINK SG CYS A 819 ZN ZN A 829 1555 1555 2.21 LINK SG CYS A 823 ZN ZN A 829 1555 1555 2.15 SITE 1 AC1 4 CYS A 800 CYS A 803 CYS A 819 CYS A 823 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1