HEADER SIGNALING PROTEIN 27-JAN-11 2L8Y TITLE SOLUTION STRUCTURE OF THE E. COLI OUTER MEMBRANE PROTEIN RCSF TITLE 2 (PERIPLASMATIC DOMAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RCSF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PERIPLASMATIC DOMAIN, RESIDUES 31-134; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: RCSF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NEB T7 EXPRESS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: P60M KEYWDS TWO COMPONENT SYSTEM, RCSF, RCS SIGNALLING SYSTEM, DISULPHIDE KEYWDS 2 BRIDGES, EXOPOLYSACCHARIDE BIOSYNTHESIS, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR V.V.ROGOV,N.Y.ROGOVA,F.BERNHARD,F.LOHR,V.DOETSCH REVDAT 3 14-JUN-23 2L8Y 1 REMARK SEQADV REVDAT 2 07-SEP-11 2L8Y 1 JRNL VERSN REVDAT 1 06-APR-11 2L8Y 0 JRNL AUTH V.V.ROGOV,N.Y.ROGOVA,F.BERNHARD,F.LOHR,V.DOTSCH JRNL TITL A DISULFIDE BRIDGE NETWORK WITHIN THE SOLUBLE PERIPLASMIC JRNL TITL 2 DOMAIN DETERMINES STRUCTURE AND FUNCTION OF THE OUTER JRNL TITL 3 MEMBRANE PROTEIN RCSF. JRNL REF J.BIOL.CHEM. V. 286 18775 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21471196 JRNL DOI 10.1074/JBC.M111.230185 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2., ARIA 1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000102105. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM [U-98% 13C; U-98% 15N] REMARK 210 RCSF(31-134); 50MM SODIUM REMARK 210 PHOSPHATE; 100MM SODIUM CHLORIDE; REMARK 210 4.6MM PROTEASE INHIBITORS REMARK 210 COCKTAIL; 0.3MM DSS; 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D HNCO; 3D REMARK 210 (HCA)CO(CA)NH; 3D H(CC)(CO)NH- REMARK 210 TOCSY; 3D (H)CC(CO)NH-TOCSY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 2D 1H- REMARK 210 13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 700 MHZ; 600 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2., SPARKY 112, CYANA REMARK 210 1.0.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 66 -73.81 -118.89 REMARK 500 1 ASP A 80 -168.97 -74.84 REMARK 500 2 LEU A 66 -69.79 -136.70 REMARK 500 2 ASP A 80 -148.84 -127.01 REMARK 500 2 PRO A 83 49.12 -85.86 REMARK 500 2 HIS A 107 -63.63 -103.00 REMARK 500 3 PRO A 48 -77.63 -71.80 REMARK 500 3 LEU A 66 -62.61 -92.44 REMARK 500 3 ASP A 80 -155.63 -97.94 REMARK 500 3 HIS A 107 -71.92 -105.72 REMARK 500 3 PRO A 116 59.19 -69.90 REMARK 500 3 THR A 132 57.59 -92.27 REMARK 500 4 LYS A 35 74.59 -157.62 REMARK 500 4 ARG A 45 48.46 -156.99 REMARK 500 4 THR A 47 83.40 57.36 REMARK 500 4 THR A 53 43.16 -109.07 REMARK 500 4 PRO A 62 94.61 -66.65 REMARK 500 4 ILE A 131 93.58 -69.61 REMARK 500 5 PRO A 32 -169.19 -77.96 REMARK 500 5 ALA A 46 -101.90 -134.58 REMARK 500 5 LEU A 66 -70.74 -103.27 REMARK 500 5 PRO A 83 90.12 -62.55 REMARK 500 5 HIS A 107 -67.13 -105.90 REMARK 500 5 VAL A 111 79.63 -107.89 REMARK 500 6 LYS A 35 76.53 -102.31 REMARK 500 6 LEU A 66 -79.08 -99.58 REMARK 500 6 GLN A 79 50.98 -92.63 REMARK 500 6 ASP A 80 -162.05 -118.08 REMARK 500 6 PRO A 83 46.14 -81.83 REMARK 500 6 HIS A 107 -77.44 -102.44 REMARK 500 7 ARG A 45 88.34 -155.00 REMARK 500 7 THR A 47 92.54 52.30 REMARK 500 7 PRO A 62 78.49 -68.87 REMARK 500 7 LEU A 66 -79.18 -104.04 REMARK 500 7 LYS A 100 -8.29 75.98 REMARK 500 7 HIS A 107 -65.39 -106.39 REMARK 500 7 PRO A 116 105.74 -59.95 REMARK 500 8 THR A 53 47.31 -109.49 REMARK 500 8 PRO A 62 84.83 -66.65 REMARK 500 8 LEU A 66 -77.74 -108.24 REMARK 500 8 HIS A 107 -76.23 -103.46 REMARK 500 8 ALA A 133 -72.90 -115.53 REMARK 500 10 SER A 77 -160.26 -163.00 REMARK 500 10 ASP A 80 -158.76 -85.77 REMARK 500 10 HIS A 107 -61.96 -93.48 REMARK 500 10 THR A 132 77.71 -111.97 REMARK 500 11 THR A 47 105.37 68.91 REMARK 500 11 PRO A 48 -74.54 -75.62 REMARK 500 11 PRO A 62 94.06 -66.86 REMARK 500 11 ASP A 80 -167.81 -105.12 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17431 RELATED DB: BMRB DBREF 2L8Y A 31 134 UNP P69411 RCSF_ECOLI 31 134 SEQADV 2L8Y MET A 30 UNP P69411 INITIATING METHIONINE SEQRES 1 A 105 MET ALA PRO GLN PRO LYS ALA GLU PRO ALA LYS PRO LYS SEQRES 2 A 105 ALA PRO ARG ALA THR PRO VAL ARG ILE TYR THR ASN ALA SEQRES 3 A 105 GLU GLU LEU VAL GLY LYS PRO PHE ARG ASP LEU GLY GLU SEQRES 4 A 105 VAL SER GLY ASP SER CYS GLN ALA SER ASN GLN ASP SER SEQRES 5 A 105 PRO PRO SER ILE PRO THR ALA ARG LYS ARG MET GLN ILE SEQRES 6 A 105 ASN ALA SER LYS MET LYS ALA ASN ALA VAL LEU LEU HIS SEQRES 7 A 105 SER CYS GLU VAL THR SER GLY THR PRO GLY CYS TYR ARG SEQRES 8 A 105 GLN ALA VAL CYS ILE GLY SER ALA LEU ASN ILE THR ALA SEQRES 9 A 105 LYS HELIX 1 1 ASN A 54 GLY A 60 1 7 HELIX 2 2 SER A 84 LYS A 98 1 15 SHEET 1 A 4 ARG A 50 TYR A 52 0 SHEET 2 A 4 ALA A 103 THR A 115 1 O VAL A 104 N TYR A 52 SHEET 3 A 4 CYS A 118 ILE A 131 -1 O GLN A 121 N THR A 112 SHEET 4 A 4 PHE A 63 GLN A 75 -1 N GLY A 71 O CYS A 124 SSBOND 1 CYS A 74 CYS A 118 1555 1555 2.03 SSBOND 2 CYS A 109 CYS A 124 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1