data_2L96 # _entry.id 2L96 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2L96 RCSB RCSB102113 BMRB 17438 WWPDB D_1000102113 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 17438 BMRB unspecified . 2L99 PDB unspecified LAK160-P10 2L9A PDB unspecified LAK160-P12 # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L96 _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2011-02-01 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vermeer, L.S.' 1 'Bui, T.T.' 2 'Lan, Y.' 3 'Jumagulova, E.' 4 'Kozlowska, J.' 5 'McIntyre, C.' 6 'Drake, A.F.' 7 'Mason, J.A.' 8 # _citation.id primary _citation.title ;The role of proline induced conformational flexibility in determining the antibacterial potency of linear cationic alpha-helical peptides ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vermeer, L.S.' 1 primary 'Bui, T.T.' 2 primary 'Lan, Y.' 3 primary 'Jumagulova, E.' 4 primary 'Kozlowska, J.' 5 primary 'McIntyre, C.' 6 primary 'Drake, A.F.' 7 primary 'Mason, J.A.' 8 # _cell.entry_id 2L96 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2L96 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description LAK160-P7 _entity.formula_weight 2666.508 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KKLKLAPAKLALLWKALALKLKKA _entity_poly.pdbx_seq_one_letter_code_can KKLKLAPAKLALLWKALALKLKKA _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 LYS n 1 3 LEU n 1 4 LYS n 1 5 LEU n 1 6 ALA n 1 7 PRO n 1 8 ALA n 1 9 LYS n 1 10 LEU n 1 11 ALA n 1 12 LEU n 1 13 LEU n 1 14 TRP n 1 15 LYS n 1 16 ALA n 1 17 LEU n 1 18 ALA n 1 19 LEU n 1 20 LYS n 1 21 LEU n 1 22 LYS n 1 23 LYS n 1 24 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'synthesized by solid phase synthesis' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2L96 _struct_ref.pdbx_db_accession 2L96 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KKLKLAPAKLALLWKALALKLKKA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L96 _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 24 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2L96 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 24 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H TOCSY' 1 2 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 105mM _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '1mM LAK160-P7; 100mM SDS; 5mM TRIS; 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model Avance _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2L96 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details 'Standard ARIA refinement in water' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L96 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 8 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L96 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version Goddard 'peak picking' SPARKY 1 3.113 Goddard 'chemical shift assignment' SPARKY 2 3.113 ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA 3 2.2 ;Linge, O'Donoghue and Nilges ; refinement ARIA 4 2.2 'Bruker Biospin' collection TOPSPIN 5 3.0 'Bruker Biospin' processing TOPSPIN 6 3.0 'Laskowski and MacArthur' 'data analysis' ProcheckNMR 7 3.5.4 'Rullmann, Doreleijers and Kaptein' 'data analysis' AQUA 8 3.2 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNSSOLVE 9 1.21 'Python Software Foundation' 'data analysis' Python 10 2.6.5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Synthetic cationic anti-microbial peptide LAK160-P7' _exptl.entry_id 2L96 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L96 _struct.title 'Solution structure of LAK160-P7' _struct.pdbx_descriptor LAK160-P7 _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L96 _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN, ANTIMICROBIAL PROTEIN' _struct_keywords.text 'cationic, proline, ampiphatic, DE NOVO PROTEIN, ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 6 ? LEU A 10 ? ALA X 6 LEU X 10 5 ? 5 HELX_P HELX_P2 2 ALA A 16 ? LEU A 21 ? ALA X 16 LEU X 21 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2L96 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS X . n A 1 2 LYS 2 2 2 LYS LYS X . n A 1 3 LEU 3 3 3 LEU LEU X . n A 1 4 LYS 4 4 4 LYS LYS X . n A 1 5 LEU 5 5 5 LEU LEU X . n A 1 6 ALA 6 6 6 ALA ALA X . n A 1 7 PRO 7 7 7 PRO PRO X . n A 1 8 ALA 8 8 8 ALA ALA X . n A 1 9 LYS 9 9 9 LYS LYS X . n A 1 10 LEU 10 10 10 LEU LEU X . n A 1 11 ALA 11 11 11 ALA ALA X . n A 1 12 LEU 12 12 12 LEU LEU X . n A 1 13 LEU 13 13 13 LEU LEU X . n A 1 14 TRP 14 14 14 TRP TRP X . n A 1 15 LYS 15 15 15 LYS LYS X . n A 1 16 ALA 16 16 16 ALA ALA X . n A 1 17 LEU 17 17 17 LEU LEU X . n A 1 18 ALA 18 18 18 ALA ALA X . n A 1 19 LEU 19 19 19 LEU LEU X . n A 1 20 LYS 20 20 20 LYS LYS X . n A 1 21 LEU 21 21 21 LEU LEU X . n A 1 22 LYS 22 22 22 LYS LYS X . n A 1 23 LYS 23 23 23 LYS LYS X . n A 1 24 ALA 24 24 24 ALA ALA X . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id LAK160-P7-1 1 ? mM ? 1 SDS-2 100 ? mM ? 1 TRIS-3 5 ? mM ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2L96 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 82 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 23 _pdbx_nmr_constraints.NOE_long_range_total_count 0 _pdbx_nmr_constraints.NOE_medium_range_total_count 24 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 35 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU X 10 ? ? -133.27 -41.81 2 1 TRP X 14 ? ? 71.89 -22.77 3 1 ALA X 16 ? ? 71.38 -49.99 4 2 LEU X 5 ? ? -89.38 48.27 5 2 LEU X 10 ? ? -147.58 -63.00 6 2 ALA X 11 ? ? -90.74 43.22 7 2 LYS X 23 ? ? 73.46 -15.39 8 3 LEU X 10 ? ? -128.64 -74.10 9 3 TRP X 14 ? ? -141.90 -40.51 10 4 LYS X 9 ? ? -140.45 -37.03 11 4 TRP X 14 ? ? -88.80 40.50 12 4 LYS X 20 ? ? -87.83 32.10 13 4 LYS X 23 ? ? -106.18 68.59 14 5 LYS X 2 ? ? -69.45 -179.07 15 5 LYS X 4 ? ? -155.02 23.43 16 5 LYS X 9 ? ? -152.64 -45.09 17 5 LYS X 22 ? ? -131.31 -32.18 18 5 LYS X 23 ? ? 74.94 -57.17 19 6 ALA X 6 ? ? -151.48 61.98 20 6 LEU X 10 ? ? -134.36 -47.83 21 6 LEU X 13 ? ? -115.58 70.96 22 6 LYS X 15 ? ? -75.24 47.86 23 6 ALA X 16 ? ? -155.60 -50.12 24 7 ALA X 16 ? ? -154.63 -62.04 25 7 LYS X 23 ? ? 72.91 -52.75 26 8 LEU X 5 ? ? -95.47 34.76 27 8 ALA X 6 ? ? -118.31 77.11 28 8 PRO X 7 ? ? -94.71 53.95 29 8 ALA X 11 ? ? -119.85 55.09 30 8 LYS X 20 ? ? -136.14 -48.76 31 10 LEU X 5 ? ? 65.17 104.39 #