HEADER TRANSCRIPTION 07-FEB-11 2L9B TITLE HETERODIMER BETWEEN RNA14P MONKEYTAIL DOMAIN AND RNA15P HINGE DOMAIN TITLE 2 OF THE YEAST CF IA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA 3'-END-PROCESSING PROTEIN RNA15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 127-232; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MRNA 3'-END-PROCESSING PROTEIN RNA14; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: C-TERMINAL RESIDUES 626-677; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RNA15, YGL044C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21PLYSY; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-MCN-HIS; SOURCE 10 OTHER_DETAILS: N-TERMINAL HIS6-TAG FOLLOWED BY TEV PROTEASE CLEAVAGE SOURCE 11 SITE. CO-EXPRESSED WITH RNA14P; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: YEAST; SOURCE 15 ORGANISM_TAXID: 4932; SOURCE 16 GENE: RNA14, YMR061W, YM9796.14; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21PLYSY; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PCDF; SOURCE 21 OTHER_DETAILS: CO-EXPRESSED WITH RNA14P KEYWDS 3' END MRNA MATURATION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.MORENO-MORCILLO,L.MINVIELLE-SEBASTIA,S.FRIBOURG,C.D.MACKERETH REVDAT 2 14-JUN-23 2L9B 1 REMARK SEQADV REVDAT 1 27-APR-11 2L9B 0 JRNL AUTH M.MORENO-MORCILLO,L.MINVIELLE-SEBASTIA,S.FRIBOURG, JRNL AUTH 2 C.D.MACKERETH JRNL TITL LOCKED TETHER FORMATION BY COOPERATIVE FOLDING OF RNA14P JRNL TITL 2 MONKEYTAIL AND RNA15P HINGE DOMAINS IN THE YEAST CF IA JRNL TITL 3 COMPLEX. JRNL REF STRUCTURE V. 19 534 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21481776 JRNL DOI 10.1016/J.STR.2011.02.003 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS 1.1, ARIA1.2/CNS1.1 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000102118. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.07 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2-1 MM [U-99% 15N] RNA15P, 0.2 REMARK 210 -1 MM [U-99% 15N] RNA14P, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 10 % D2O, 90% REMARK 210 H2O/10% D2O; 0.4 MM [U-99% 13C; REMARK 210 U-99% 15N] RNA15P, 0.4 MM [U-99% REMARK 210 13C; U-99% 15N] RNA14P, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 100 % D2O, REMARK 210 100% D2O; 0.5 MM [U-99% 13C; U- REMARK 210 99% 15N; U-99% 2H; 1H I,L,V- REMARK 210 METHYL] RNA15P, 0.5 MM [U-99% REMARK 210 13C; U-99% 15N; U-99% 2H; 1H I,L, REMARK 210 V-METHYL] RNA14P, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 2 MM DTT, 100 % D2O, 100% D2O; REMARK 210 1 MM [U-15N, U-13C]-LEU RNA15P, REMARK 210 1 MM [U-15N, U-13C]-LEU RNA14P, REMARK 210 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 100 % REMARK 210 D2O, 100% D2O; 0.4 MM [U-99% 13C; REMARK 210 U-99% 15N] RNA15P, 0.4 MM [U-99% REMARK 210 13C; U-99% 15N] RNA14P, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 10 % D2O, 90% REMARK 210 H2O/10% D2O; 1 MM [U-15N, U-13C] REMARK 210 -LEU RNA15P, 1 MM [U-15N, U-13C]- REMARK 210 LEU RNA14P, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 2 MM DTT, 10 % D2O, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N; U-70% 2H] RNA15P, 1 MM [U- REMARK 210 100% 13C; U-100% 15N; U-70% 2H] REMARK 210 RNA14P, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 2 MM DTT, REMARK 210 10 % D2O, 90% H2O/10% D2O; 0.5 REMARK 210 MM [U-99% 13C; U-99% 15N; U-99% REMARK 210 2H; 1H I,L,V-METHYL] RNA15P, 0.5 REMARK 210 MM [U-99% 13C; U-99% 15N; U-99% REMARK 210 2H, 1H I,L,V-METHYL] RNA14P, 20 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 10 % REMARK 210 D2O, 90% H2O/10% D2O; 1 MM [U-10% REMARK 210 13C; U-99% 15N] RNA15P, 1 MM [U- REMARK 210 10% 13C; U-99% 15N] RNA14P, 20 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 10 % REMARK 210 D2O, 100% D2O; 0.2 MM [U-99% 15N] REMARK 210 RNA15P, 0.2 MM [U-99% 15N] REMARK 210 RNA14P, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 2 MM DTT, REMARK 210 100 % D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 2D 1H-15N TROSY SPIN-STATE REMARK 210 SELECTIVE; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D HNHA; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; 2D 1H-15N HMBC; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D HBHD; 2D HBHE; 3D HCACO; 3D REMARK 210 HCCH-TOCSY; 2D 1H-13C HSQC CT; REMARK 210 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, ARIA 1.2 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 124 REMARK 465 HIS A 125 REMARK 465 MET A 126 REMARK 465 SER A 127 REMARK 465 ASN A 128 REMARK 465 GLY A 129 REMARK 465 PRO A 130 REMARK 465 ASP A 131 REMARK 465 PHE A 132 REMARK 465 GLN A 133 REMARK 465 ASN A 134 REMARK 465 SER A 135 REMARK 465 GLY A 136 REMARK 465 ASN A 137 REMARK 465 SER A 229 REMARK 465 ARG A 230 REMARK 465 PRO A 231 REMARK 465 GLN A 232 REMARK 465 MET B 625 REMARK 465 LYS B 626 REMARK 465 ARG B 627 REMARK 465 ASP B 628 REMARK 465 SER B 629 REMARK 465 THR B 670 REMARK 465 VAL B 671 REMARK 465 GLU B 672 REMARK 465 SER B 673 REMARK 465 THR B 674 REMARK 465 LYS B 675 REMARK 465 SER B 676 REMARK 465 GLY B 677 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 156 27.04 -74.45 REMARK 500 1 PRO B 643 150.26 -38.03 REMARK 500 1 ARG B 645 -10.20 -47.65 REMARK 500 1 THR B 650 -83.49 -101.01 REMARK 500 1 LEU B 652 178.45 69.13 REMARK 500 2 PRO B 643 -163.51 -55.14 REMARK 500 2 PHE B 648 -100.74 -85.33 REMARK 500 2 ASN B 649 133.16 66.49 REMARK 500 2 THR B 650 61.87 136.39 REMARK 500 2 ASN B 651 -55.18 74.58 REMARK 500 2 LEU B 652 112.76 68.40 REMARK 500 3 SER A 150 6.87 -69.59 REMARK 500 3 MET A 158 69.10 -152.67 REMARK 500 3 THR A 159 152.18 128.02 REMARK 500 3 LEU A 227 31.17 -88.85 REMARK 500 3 PHE B 648 -104.23 -104.31 REMARK 500 3 ASN B 651 -78.71 67.02 REMARK 500 3 LEU B 652 105.17 64.55 REMARK 500 3 ASP B 654 106.54 -51.83 REMARK 500 4 THR B 650 -161.19 171.67 REMARK 500 4 LEU B 652 120.83 72.47 REMARK 500 5 ASN A 155 83.54 -66.81 REMARK 500 5 ILE A 156 27.12 -76.17 REMARK 500 5 PRO B 643 155.46 -49.35 REMARK 500 5 ASN B 651 82.27 61.03 REMARK 500 6 PRO A 146 -64.22 -93.27 REMARK 500 6 LEU A 148 108.26 -44.23 REMARK 500 6 ASN A 155 88.77 -69.09 REMARK 500 6 ILE A 156 21.71 -79.71 REMARK 500 6 MET A 158 -30.41 -130.44 REMARK 500 6 PRO B 643 150.23 -41.89 REMARK 500 6 ARG B 645 -5.72 -53.12 REMARK 500 6 ASN B 649 47.27 -77.78 REMARK 500 6 ASN B 651 -81.36 67.10 REMARK 500 6 LEU B 652 135.77 68.34 REMARK 500 7 PRO B 643 154.81 -46.91 REMARK 500 7 ASN B 651 32.07 -178.05 REMARK 500 7 LEU B 652 -79.20 -87.86 REMARK 500 7 ASP B 654 104.60 -52.52 REMARK 500 8 LYS A 174 -37.94 -34.92 REMARK 500 8 ARG B 645 -6.83 -58.49 REMARK 500 8 ASN B 651 76.63 -69.76 REMARK 500 8 LEU B 652 -62.75 -90.62 REMARK 500 9 GLN A 143 -62.28 -93.99 REMARK 500 9 ILE A 156 27.09 -78.46 REMARK 500 9 MET A 158 -64.18 -147.60 REMARK 500 9 PRO B 643 147.23 -39.14 REMARK 500 9 ARG B 645 -7.81 -54.34 REMARK 500 9 TYR B 647 3.17 -68.03 REMARK 500 9 PHE B 648 -129.31 -106.88 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 PHE B 648 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17161 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENTS DBREF 2L9B A 127 232 UNP P25299 RNA15_YEAST 127 232 DBREF 2L9B B 626 677 UNP P25298 RNA14_YEAST 626 677 SEQADV 2L9B GLY A 124 UNP P25299 EXPRESSION TAG SEQADV 2L9B HIS A 125 UNP P25299 EXPRESSION TAG SEQADV 2L9B MET A 126 UNP P25299 EXPRESSION TAG SEQADV 2L9B ALA A 196 UNP P25299 VAL 196 VARIANT SEQADV 2L9B MET B 625 UNP P25298 INITIATING METHIONINE SEQRES 1 A 109 GLY HIS MET SER ASN GLY PRO ASP PHE GLN ASN SER GLY SEQRES 2 A 109 ASN ALA ASN PHE LEU SER GLN LYS PHE PRO GLU LEU PRO SEQRES 3 A 109 SER GLY ILE ASP VAL ASN ILE ASN MET THR THR PRO ALA SEQRES 4 A 109 MET MET ILE SER SER GLU LEU ALA LYS LYS PRO LYS GLU SEQRES 5 A 109 VAL GLN LEU LYS PHE LEU GLN LYS PHE GLN GLU TRP THR SEQRES 6 A 109 ARG ALA HIS PRO GLU ASP ALA ALA SER LEU LEU GLU LEU SEQRES 7 A 109 CYS PRO GLN LEU SER PHE VAL THR ALA GLU LEU LEU LEU SEQRES 8 A 109 THR ASN GLY ILE CYS LYS VAL ASP ASP LEU ILE PRO LEU SEQRES 9 A 109 ALA SER ARG PRO GLN SEQRES 1 B 53 MET LYS ARG ASP SER GLU LEU PRO THR GLU VAL LEU ASP SEQRES 2 B 53 LEU LEU SER VAL ILE PRO LYS ARG GLN TYR PHE ASN THR SEQRES 3 B 53 ASN LEU LEU ASP ALA GLN LYS LEU VAL ASN PHE LEU ASN SEQRES 4 B 53 ASP GLN VAL GLU ILE PRO THR VAL GLU SER THR LYS SER SEQRES 5 B 53 GLY HELIX 1 1 ALA A 138 LYS A 144 1 7 HELIX 2 2 THR A 160 LYS A 171 1 12 HELIX 3 3 PRO A 173 HIS A 191 1 19 HELIX 4 4 HIS A 191 CYS A 202 1 12 HELIX 5 5 CYS A 202 GLY A 217 1 16 HELIX 6 6 LYS A 220 ILE A 225 1 6 HELIX 7 7 PRO B 632 ILE B 642 1 11 HELIX 8 8 LYS B 644 ASN B 649 5 6 HELIX 9 9 ASP B 654 GLN B 665 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1