HEADER TRANSPORT PROTEIN 07-FEB-11 2L9C TITLE STRUCTURAL INSIGHTS INTO THE SPECIFICITY OF DARCIN, AN ATYPICAL MAJOR TITLE 2 URINARY PROTEIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DARCIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAJOR URINARY PROTEIN 20, MAJOR URINARY PROTEIN 24; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57; SOURCE 6 GENE: MUP20, MUP24, Q5FW60; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS MALE SPECIFIC PROTEIN, LIPOCALIN, TRANSPORT PROTEIN, DARCIN, MUP, KEYWDS 2 MAJOR URINARY PROTEIN, MUP20 EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.M.PHELAN,L.MCLEAN,R.J.BEYNON,J.L.HURST,L.LIAN REVDAT 3 06-DEC-23 2L9C 1 LINK REVDAT 2 14-JUN-23 2L9C 1 REMARK SEQADV LINK REVDAT 1 08-FEB-12 2L9C 0 JRNL AUTH M.M.PHELAN,L.MCLEAN,R.J.BEYNON,J.L.HURST,L.LIAN JRNL TITL STRUCTURAL INSIGHTS INTO THE SPECIFICITY OF DARCIN, AN JRNL TITL 2 ATYPICAL MAJOR URINARY PROTEIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1.3, CYANA 2.1 AND 3 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000102119. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 25 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 13C; U-98% 15N] REMARK 210 DARCIN, 25 MM POTASSIUM REMARK 210 PHOSPHATE, 0.2 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HBHA(CO)NH; 3D REMARK 210 HBHANH; 3D HCCH-TOCSY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 2D REMARK 210 CB(CGCD)HD AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1.3, CCPNMR ANALYSIS REMARK 210 CCPNMR, TALOS PLUS, CYANA 2.1 REMARK 210 AND 3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 11 -179.61 -171.27 REMARK 500 1 THR A 45 145.84 178.78 REMARK 500 1 SER A 70 -172.68 -179.41 REMARK 500 1 TYR A 103 96.60 -174.21 REMARK 500 1 ASN A 118 -86.00 -113.72 REMARK 500 2 SER A 9 139.77 -173.32 REMARK 500 2 HIS A 15 76.55 -104.40 REMARK 500 2 ASN A 35 102.38 -53.37 REMARK 500 2 ILE A 41 -59.70 -120.06 REMARK 500 2 THR A 45 143.77 -171.72 REMARK 500 2 ARG A 58 42.81 -94.12 REMARK 500 2 LEU A 67 -168.73 -101.74 REMARK 500 2 ASN A 69 -44.53 -135.97 REMARK 500 2 SER A 70 -169.09 -105.40 REMARK 500 2 CYS A 83 170.93 -55.74 REMARK 500 2 TYR A 103 -68.07 -137.67 REMARK 500 2 ASP A 104 24.21 -140.50 REMARK 500 2 ASN A 118 -85.34 -109.66 REMARK 500 3 SER A 8 -175.51 -69.76 REMARK 500 3 MET A 25 -62.99 -93.80 REMARK 500 3 GLU A 26 107.06 -52.80 REMARK 500 3 ASN A 35 108.78 -53.08 REMARK 500 3 THR A 45 139.39 179.29 REMARK 500 3 LYS A 47 77.59 -106.47 REMARK 500 3 ARG A 58 45.27 -98.80 REMARK 500 3 SER A 70 -169.73 -161.60 REMARK 500 3 CYS A 83 179.58 -57.34 REMARK 500 3 TYR A 103 -68.91 -141.89 REMARK 500 3 LYS A 113 122.79 -176.34 REMARK 500 3 ASN A 118 -85.48 -107.76 REMARK 500 4 HIS A 10 106.74 -57.48 REMARK 500 4 HIS A 13 175.78 -58.30 REMARK 500 4 GLU A 26 58.73 -100.96 REMARK 500 4 THR A 45 141.70 178.97 REMARK 500 4 ASN A 69 -44.12 -136.54 REMARK 500 4 TYR A 103 -48.25 -135.10 REMARK 500 4 ASP A 104 28.81 -146.46 REMARK 500 4 LYS A 113 121.88 -175.64 REMARK 500 4 ASN A 118 -85.93 -111.56 REMARK 500 4 ALA A 173 -169.63 -122.30 REMARK 500 4 ARG A 180 105.74 -51.34 REMARK 500 5 ASN A 35 109.62 -59.30 REMARK 500 5 THR A 45 144.55 -176.21 REMARK 500 5 ARG A 58 49.48 -97.26 REMARK 500 5 ASN A 69 -44.69 -135.92 REMARK 500 5 SER A 70 -168.70 -103.82 REMARK 500 5 TYR A 103 101.37 -172.98 REMARK 500 5 LYS A 113 124.30 -173.67 REMARK 500 5 ASN A 118 -85.81 -113.04 REMARK 500 6 HIS A 12 111.84 -160.78 REMARK 500 REMARK 500 THIS ENTRY HAS 180 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16840 RELATED DB: BMRB DBREF 2L9C A 20 181 UNP Q5FW60 MUP20_MOUSE 20 181 SEQADV 2L9C MET A 6 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C GLY A 7 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C SER A 8 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C SER A 9 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C HIS A 10 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C HIS A 11 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C HIS A 12 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C HIS A 13 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C HIS A 14 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C HIS A 15 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C ILE A 16 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C GLU A 17 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C GLY A 18 UNP Q5FW60 EXPRESSION TAG SEQADV 2L9C ARG A 19 UNP Q5FW60 EXPRESSION TAG SEQRES 1 A 176 MET GLY SER SER HIS HIS HIS HIS HIS HIS ILE GLU GLY SEQRES 2 A 176 ARG GLU GLU ALA SER SER MET GLU ARG ASN PHE ASN VAL SEQRES 3 A 176 GLU LYS ILE ASN GLY GLU TRP TYR THR ILE MET LEU ALA SEQRES 4 A 176 THR ASP LYS ARG GLU LYS ILE GLU GLU HIS GLY SER MET SEQRES 5 A 176 ARG VAL PHE VAL GLU TYR ILE HIS VAL LEU GLU ASN SER SEQRES 6 A 176 LEU ALA LEU LYS PHE HIS ILE ILE ILE ASN GLU GLU CYS SEQRES 7 A 176 SER GLU ILE PHE LEU VAL ALA ASP LYS THR GLU LYS ALA SEQRES 8 A 176 GLY GLU TYR SER VAL THR TYR ASP GLY SER ASN THR PHE SEQRES 9 A 176 THR ILE LEU LYS THR ASP TYR ASP ASN TYR ILE MET ILE SEQRES 10 A 176 HIS LEU ILE ASN LYS LYS ASP GLY GLU THR PHE GLN LEU SEQRES 11 A 176 MET GLU LEU TYR GLY ARG GLU PRO ASP LEU SER SER ASP SEQRES 12 A 176 ILE LYS GLU LYS PHE ALA GLN LEU SER GLU GLU HIS GLY SEQRES 13 A 176 ILE VAL ARG GLU ASN ILE ILE ASP LEU THR ASN ALA ASN SEQRES 14 A 176 ARG CYS LEU GLU ALA ARG GLU HELIX 1 1 ASN A 30 ASN A 35 1 6 HELIX 2 2 SER A 146 GLU A 158 1 13 HELIX 3 3 GLU A 159 GLY A 161 5 3 HELIX 4 4 THR A 171 ALA A 173 5 3 SHEET 1 A10 GLY A 36 GLU A 37 0 SHEET 2 A10 PHE A 60 VAL A 66 -1 O ILE A 64 N GLY A 36 SHEET 3 A10 SER A 70 HIS A 76 -1 O ALA A 72 N HIS A 65 SHEET 4 A10 LEU A 88 LYS A 92 -1 O LEU A 88 N LEU A 73 SHEET 5 A10 GLU A 98 THR A 102 -1 O SER A 100 N ASP A 91 SHEET 6 A10 SER A 106 THR A 110 -1 O PHE A 109 N TYR A 99 SHEET 7 A10 TYR A 119 LYS A 128 -1 O ILE A 125 N THR A 108 SHEET 8 A10 GLU A 131 GLY A 140 -1 O GLU A 131 N LYS A 128 SHEET 9 A10 THR A 40 THR A 45 -1 N ALA A 44 O MET A 136 SHEET 10 A10 ILE A 168 ASP A 169 -1 O ILE A 168 N LEU A 43 SSBOND 1 CYS A 83 CYS A 176 1555 1555 2.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1