HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-FEB-11 2L9D TITLE SOLUTION STRUCTURE OF THE PROTEIN YP_546394.1, THE FIRST STRUCTURAL TITLE 2 REPRESENTATIVE OF THE PFAM FAMILY PF12112 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACILLUS FLAGELLATUS; SOURCE 3 ORGANISM_TAXID: 265072; SOURCE 4 STRAIN: KT / ATCC 51484 / DSM 6875; SOURCE 5 GENE: MFLA_2286; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PSPEEDET KEYWDS PG9854E, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, UNKNOWN FUNCTION, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 JCSG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.MOHANTY,P.SERRANO,M.GERALT,R.HORST,K.WUTHRICH,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 4 14-JUN-23 2L9D 1 REMARK REVDAT 3 01-FEB-23 2L9D 1 REMARK SEQADV REVDAT 2 03-AUG-11 2L9D 1 VERSN KEYWDS REVDAT 1 16-MAR-11 2L9D 0 JRNL AUTH B.MOHANTY,P.SERRANO,M.GERALT,R.HORST,K.WUTHRICH JRNL TITL SOLUTION STRUCTURE OF THE PROTEIN YP_546394.1, THE FIRST JRNL TITL 2 STRUCTURAL REPRESENTATIVE OF THE PFAM FAMILY PF12112 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, OPALP REMARK 3 AUTHORS : GUNTERT P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ENERGY REFINEMENT REMARK 4 REMARK 4 2L9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000102120. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.113 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-98% 13C; U-98% 15N] REMARK 210 YP_546394.1, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 4.5 MM SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 4D APSY - HACANH; 5D APSY - REMARK 210 HACACONH; 5D APSY - CBCACONH; REMARK 210 15N RESOLVED [1H,1H]-NOESY; REMARK 210 13CALI RESOLVED [1H,1H]-NOESY; REMARK 210 13CARO RESOLVED [1H,1H]-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO 2.0.0, CARA 1.5.3, TOPSPIN REMARK 210 1.3, OPALP 1.2 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 7 -164.97 45.64 REMARK 500 1 ALA A 43 5.96 55.64 REMARK 500 1 ARG A 62 -85.29 -55.37 REMARK 500 1 CYS A 63 166.60 73.51 REMARK 500 1 VAL A 105 -61.69 -120.09 REMARK 500 1 THR A 106 20.84 -78.35 REMARK 500 2 THR A 4 18.18 48.67 REMARK 500 2 CYS A 63 95.45 42.87 REMARK 500 2 ASN A 74 85.06 -152.19 REMARK 500 2 ALA A 95 2.59 -65.70 REMARK 500 2 GLN A 104 5.43 -67.08 REMARK 500 3 LYS A 11 14.78 -141.56 REMARK 500 3 GLU A 59 19.47 53.86 REMARK 500 3 CYS A 63 -164.74 44.90 REMARK 500 3 ASP A 94 -166.46 -109.55 REMARK 500 3 ASP A 101 -166.36 -73.55 REMARK 500 4 THR A 5 15.06 -147.38 REMARK 500 4 CYS A 63 161.96 60.96 REMARK 500 4 ILE A 100 -167.73 -126.58 REMARK 500 5 THR A 4 -46.98 -134.29 REMARK 500 5 THR A 5 46.28 -140.05 REMARK 500 5 GLU A 6 73.83 44.40 REMARK 500 5 SER A 8 -154.71 -145.53 REMARK 500 5 TYR A 38 62.84 -115.33 REMARK 500 5 GLU A 59 -2.96 63.57 REMARK 500 5 CYS A 63 151.39 64.03 REMARK 500 5 ASN A 74 80.68 -168.86 REMARK 500 5 GLN A 89 32.19 75.30 REMARK 500 5 VAL A 105 -44.54 -130.62 REMARK 500 6 THR A 5 101.19 68.95 REMARK 500 6 ALA A 43 -48.89 70.46 REMARK 500 6 ASP A 44 5.33 -67.96 REMARK 500 6 LEU A 47 159.56 49.06 REMARK 500 6 ARG A 62 -73.70 -77.27 REMARK 500 6 CYS A 63 168.09 63.09 REMARK 500 6 ASN A 74 81.93 -151.43 REMARK 500 6 GLN A 104 6.78 -69.58 REMARK 500 6 THR A 106 59.22 -97.16 REMARK 500 7 GLU A 12 104.61 -162.09 REMARK 500 7 TYR A 38 37.04 -90.94 REMARK 500 7 LYS A 46 41.62 -146.67 REMARK 500 7 LEU A 47 -175.63 52.50 REMARK 500 7 ARG A 48 114.89 179.16 REMARK 500 7 CYS A 63 -175.20 52.83 REMARK 500 7 VAL A 105 -59.72 -133.44 REMARK 500 8 MET A 2 -82.12 -80.92 REMARK 500 8 THR A 4 -23.87 -142.37 REMARK 500 8 THR A 5 113.26 -168.38 REMARK 500 8 LYS A 7 169.94 71.36 REMARK 500 8 CYS A 63 172.71 49.09 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 56 VAL A 57 1 145.90 REMARK 500 ASP A 101 ALA A 102 3 149.48 REMARK 500 ARG A 56 VAL A 57 5 147.69 REMARK 500 ARG A 56 VAL A 57 8 143.55 REMARK 500 ARG A 56 VAL A 57 9 147.17 REMARK 500 ARG A 56 VAL A 57 10 140.46 REMARK 500 ARG A 56 VAL A 57 11 144.70 REMARK 500 ARG A 56 VAL A 57 12 145.38 REMARK 500 ARG A 56 VAL A 57 18 147.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 56 0.13 SIDE CHAIN REMARK 500 2 ARG A 45 0.11 SIDE CHAIN REMARK 500 3 ARG A 20 0.10 SIDE CHAIN REMARK 500 5 ARG A 20 0.10 SIDE CHAIN REMARK 500 6 ARG A 56 0.12 SIDE CHAIN REMARK 500 7 ARG A 45 0.11 SIDE CHAIN REMARK 500 7 ARG A 62 0.08 SIDE CHAIN REMARK 500 8 TYR A 52 0.08 SIDE CHAIN REMARK 500 10 ARG A 26 0.09 SIDE CHAIN REMARK 500 10 TYR A 38 0.08 SIDE CHAIN REMARK 500 11 ARG A 20 0.09 SIDE CHAIN REMARK 500 11 TYR A 52 0.08 SIDE CHAIN REMARK 500 12 ARG A 62 0.11 SIDE CHAIN REMARK 500 14 ARG A 20 0.08 SIDE CHAIN REMARK 500 14 ARG A 33 0.08 SIDE CHAIN REMARK 500 15 ARG A 62 0.10 SIDE CHAIN REMARK 500 16 ARG A 45 0.09 SIDE CHAIN REMARK 500 17 ARG A 62 0.12 SIDE CHAIN REMARK 500 18 ARG A 26 0.12 SIDE CHAIN REMARK 500 18 ARG A 56 0.15 SIDE CHAIN REMARK 500 20 TYR A 38 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17448 RELATED DB: BMRB REMARK 900 RELATED ID: 372839 RELATED DB: TARGETDB DBREF 2L9D A 2 108 UNP Q1GYY4 Q1GYY4_METFK 1 107 SEQADV 2L9D GLY A 1 UNP Q1GYY4 EXPRESSION TAG SEQRES 1 A 108 GLY MET GLY THR THR GLU LYS SER GLY ILE LYS GLU ILE SEQRES 2 A 108 ILE ILE GLN GLY LEU THR ARG ALA GLY LYS PRO PHE ARG SEQRES 3 A 108 PRO SER ASP TRP VAL ASP ARG MET CYS SER THR TYR ALA SEQRES 4 A 108 SER PHE GLY ALA ASP ARG LYS LEU ARG TYR SER PRO TYR SEQRES 5 A 108 LEU LYS PRO ARG VAL ILE GLU GLY VAL ARG CYS LEU ALA SEQRES 6 A 108 VAL ASP LEU LYS LEU LYS ASP THR ASN PRO GLU GLY PHE SEQRES 7 A 108 ASN GLN LEU MET HIS PHE ALA THR GLU ASN GLN LEU ASN SEQRES 8 A 108 ILE LEU ASP ALA GLU GLY ASN SER ILE ASP ALA ALA GLN SEQRES 9 A 108 VAL THR GLU ILE HELIX 1 1 ASP A 29 THR A 37 1 9 HELIX 2 2 LEU A 68 ASN A 74 1 7 HELIX 3 3 ASN A 74 GLN A 89 1 16 HELIX 4 4 ASP A 101 VAL A 105 5 5 SHEET 1 A 4 LEU A 53 PRO A 55 0 SHEET 2 A 4 LEU A 64 ASP A 67 -1 O ALA A 65 N LYS A 54 SHEET 3 A 4 GLU A 12 THR A 19 -1 N ILE A 13 O VAL A 66 SHEET 4 A 4 LEU A 90 ASP A 94 -1 O LEU A 93 N ILE A 14 SHEET 1 B 2 SER A 40 PHE A 41 0 SHEET 2 B 2 LEU A 47 ARG A 48 -1 O ARG A 48 N SER A 40 CISPEP 1 ARG A 26 PRO A 27 1 3.28 CISPEP 2 ARG A 26 PRO A 27 2 -1.32 CISPEP 3 ARG A 26 PRO A 27 3 5.63 CISPEP 4 ARG A 26 PRO A 27 4 -0.38 CISPEP 5 ARG A 26 PRO A 27 5 -7.28 CISPEP 6 ARG A 26 PRO A 27 6 -4.76 CISPEP 7 ARG A 26 PRO A 27 7 1.14 CISPEP 8 ARG A 26 PRO A 27 8 -4.67 CISPEP 9 ARG A 26 PRO A 27 9 2.17 CISPEP 10 ARG A 26 PRO A 27 10 2.02 CISPEP 11 ARG A 26 PRO A 27 11 2.32 CISPEP 12 ARG A 26 PRO A 27 12 3.36 CISPEP 13 ARG A 26 PRO A 27 13 4.44 CISPEP 14 ARG A 26 PRO A 27 14 0.68 CISPEP 15 ARG A 26 PRO A 27 15 3.72 CISPEP 16 ARG A 26 PRO A 27 16 -6.88 CISPEP 17 ARG A 26 PRO A 27 17 -11.09 CISPEP 18 ARG A 26 PRO A 27 18 -6.05 CISPEP 19 ARG A 26 PRO A 27 19 5.07 CISPEP 20 ARG A 26 PRO A 27 20 -3.64 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1