HEADER RNA 08-FEB-11 2L9E TITLE SOLUTION STRUCTURE OF THE HUMAN ANTI-CODON STEM AND LOOP(HASL) OF TITLE 2 TRANSFER RNA LYSINE 3 (TRNALYS3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A) COMPND 3 P*AP*UP*CP*UP*GP*C)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RNA EXPDTA SOLUTION NMR NUMMDL 11 MDLTYP MINIMIZED AVERAGE AUTHOR F.A.P.VENDEIX,F.V.MURPHY IV,W.CANTARA,G.LESZCZYNSKA,E.M.GUSTILO, AUTHOR 2 B.SPROAT,A.A.P.MALKIEWICZ,P.F.AGRIS REVDAT 1 02-MAR-11 2L9E 0 JRNL AUTH F.A.P.VENDEIX,F.V.MURPHY IV,W.CANTARA,G.LESZCZYNSKA, JRNL AUTH 2 E.M.GUSTILO,B.SPROAT,A.A.P.MALKIEWICZ,P.F.AGRIS JRNL TITL SOLUTION STRUCTURE OF THE HUMAN ANTI-CODON STEM AND JRNL TITL 2 LOOP(HASL) OF TRANSFER RNA LYSINE 3 (TRNALYS3) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L9E COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-11. REMARK 100 THE RCSB ID CODE IS RCSB102121. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275; 295 REMARK 210 PH : 6.2; 6.2 REMARK 210 IONIC STRENGTH : UNKNOWN; UNKNOWN REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.50 MM RNA (5'-R(*GP*CP*AP*GP* REMARK 210 AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 90% H2O/10% REMARK 210 D2O; 1.50 MM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P* REMARK 210 AP*UP*CP*UP*GP*C)-3'), 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H COSY; 2D DQF-COSY; 2D 1H REMARK 210 -13C HSQC; 2D 1H-31P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX; UNITY REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, SPARKY, CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 C A 28 H22 G A 42 1.72 REMARK 500 H22 G A 30 O2 C A 40 1.83 REMARK 500 N1 A A 29 H3 U A 41 1.83 REMARK 500 O2' U A 33 H5' 70U A 34 1.84 REMARK 500 H2' 12A A 37 O4' A A 38 1.87 REMARK 500 O6 G A 30 H41 C A 40 1.89 REMARK 500 N3 C A 28 H1 G A 42 1.89 REMARK 500 H61 A A 29 O4 U A 41 1.89 REMARK 500 H2M1 12A A 37 N3 A A 38 1.91 REMARK 500 H22 G A 27 O2 C A 43 1.91 REMARK 500 H1 G A 30 N3 C A 40 1.93 REMARK 500 H41 C A 28 O6 G A 42 1.96 REMARK 500 O2' A A 31 H5' C A 32 1.98 REMARK 500 O2' 12A A 37 H5' A A 38 2.03 REMARK 500 H1 G A 27 N3 C A 43 2.04 REMARK 500 O6 G A 27 H41 C A 43 2.05 REMARK 500 S2 12A A 37 H1' A A 38 2.05 REMARK 500 H2' A A 31 O5' C A 32 2.16 REMARK 500 C2 12A A 37 H1' A A 38 2.17 REMARK 500 O2' G A 30 H5' A A 31 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17449 RELATED DB: BMRB DBREF 2L9E A 27 43 PDB 2L9E 2L9E 27 43 SEQRES 1 A 17 G C A G A C U 70U U U 12A A U SEQRES 2 A 17 C U G C MODRES 2L9E 70U A 34 U MODRES 2L9E 12A A 37 A HET 70U A 34 39 HET 12A A 37 54 HETNAM 70U 5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'- HETNAM 2 70U MONOPHOSPHATE HETNAM 12A 2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE- HETNAM 2 12A 5'-MONOPHOSPHATE FORMUL 1 70U C12 H17 N2 O10 P S FORMUL 1 12A C16 H23 N6 O11 P S LINK O3' U A 33 P 70U A 34 1555 1555 1.61 LINK O3' 70U A 34 P U A 35 1555 1555 1.61 LINK O3' U A 36 P 12A A 37 1555 1555 1.61 LINK O3' 12A A 37 P A A 38 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1