HEADER VIRAL PROTEIN, TRANSCRIPTION 12-FEB-11 2L9J TITLE HRSV M2-1 CORE DOMAIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN 2-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CORE DOMAIN, RESIDUES 58-177; COMPND 5 SYNONYM: M2-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN RESPIRATORY SYNCYTIAL VIRUS; SOURCE 3 ORGANISM_TAXID: 11250; SOURCE 4 STRAIN: LONG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-4T3 KEYWDS PROCESSIVITY, TRANSCRIPTION CO-FACTOR, VIRAL PROTEIN, RNA BINDING KEYWDS 2 PROTEIN, RESPIRATORY SYNCYTIAL VIRUS (RSV), TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.DUBOSCLARD,M.BLONDOT,F.BONTEMS,J.ELEOUET,C.SIZUN REVDAT 3 14-JUN-23 2L9J 1 REMARK SEQADV REVDAT 2 18-SEP-13 2L9J 1 JRNL REVDAT 1 15-FEB-12 2L9J 0 JRNL AUTH M.L.BLONDOT,V.DUBOSCLARD,J.FIX,S.LASSOUED,M.AUMONT-NICAISE, JRNL AUTH 2 F.BONTEMS,J.F.ELEOUET,C.SIZUN JRNL TITL STRUCTURE AND FUNCTIONAL ANALYSIS OF THE RNA- AND VIRAL JRNL TITL 2 PHOSPHOPROTEIN-BINDING DOMAIN OF RESPIRATORY SYNCYTIAL VIRUS JRNL TITL 3 M2-1 PROTEIN. JRNL REF PLOS PATHOG. V. 8 02734 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 22675274 JRNL DOI 10.1371/JOURNAL.PPAT.1002734 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH, CYANA 2.0 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000102126. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.120 MM [U-100% 15N] M2-1-1, 50 REMARK 210 MM SODIUM PHOSPHATE-2, 150 MM REMARK 210 SODIUM CHLORIDE-3, 1 MM DTT-4, REMARK 210 93% H2O/7% D2O; 0.1 MM [U-100% REMARK 210 13C] M2-1-5, 50 MM SODIUM REMARK 210 PHOSPHATE-6, 150 MM SODIUM REMARK 210 CHLORIDE-7, 1 MM DTT-8, 100% D2O; REMARK 210 0.2 MM [U-100% 15N] M2-1-9, 50 REMARK 210 MM SODIUM PHOSPHATE-10, 150 MM REMARK 210 SODIUM CHLORIDE-11, 1 MM DTT-12, REMARK 210 0.055 V/V C12E5-13, 0.017 V/V REMARK 210 HEXANOL-14, 93% H2O/7% D2O; 0.12 REMARK 210 MM [U-100% 15N] M2-1-15, 50 MM REMARK 210 SODIUM PHOSPHATE-16, 150 MM REMARK 210 SODIUM CHLORIDE-17, 1 MM DTT-18, REMARK 210 6 % ACRYLAMIDE/BISACRYAMIDE-19, REMARK 210 93% H2O/7% D2O; 0.120 MM [U-100% REMARK 210 13C; U-100% 15N] M2-1-20, 50 MM REMARK 210 SODIUM PHOSPHATE-21, 150 MM REMARK 210 SODIUM CHLORIDE-22, 1 MM DTT-23, REMARK 210 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 2D 1H-13C HSQC; 3D HCCH-TOCSY; REMARK 210 3D CCH-TOCSY; 3D HCCH-TOCSY REMARK 210 AROMATIC; 3D 1H-13C NOESY; 2D 1H- REMARK 210 15N HSQC IPAP; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 2D REMARK 210 HBCBCGCDHD REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, TOPSPIN 2.1, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 57 REMARK 465 SER A 58 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 61 74.79 -162.82 REMARK 500 1 ALA A 63 -177.53 48.68 REMARK 500 1 GLU A 65 -115.67 -65.49 REMARK 500 1 GLU A 71 72.31 -170.32 REMARK 500 1 TYR A 72 21.73 47.15 REMARK 500 1 LEU A 74 -168.73 43.53 REMARK 500 1 SER A 86 9.13 58.92 REMARK 500 1 PRO A 120 13.36 -69.09 REMARK 500 1 ASN A 121 27.48 -154.62 REMARK 500 1 ASN A 141 111.58 -171.71 REMARK 500 1 THR A 172 108.49 -45.27 REMARK 500 1 ASN A 174 -170.74 45.60 REMARK 500 1 ASN A 175 64.89 -162.65 REMARK 500 2 SER A 61 77.30 46.65 REMARK 500 2 ALA A 63 -159.66 58.15 REMARK 500 2 LEU A 66 -119.25 -73.65 REMARK 500 2 ASP A 67 -136.71 -155.77 REMARK 500 2 ARG A 68 -28.66 -159.87 REMARK 500 2 GLU A 70 -86.13 -161.29 REMARK 500 2 GLU A 71 128.94 -170.95 REMARK 500 2 ALA A 73 -46.19 -161.71 REMARK 500 2 ILE A 84 -7.60 -57.60 REMARK 500 2 SER A 86 -49.35 -169.22 REMARK 500 2 ASN A 88 -146.45 39.56 REMARK 500 2 ASN A 121 64.01 60.55 REMARK 500 2 ASN A 141 128.61 -178.17 REMARK 500 2 THR A 172 95.36 53.37 REMARK 500 2 ASN A 174 -145.32 46.54 REMARK 500 2 ASN A 175 68.76 -177.25 REMARK 500 3 SER A 61 54.75 -165.00 REMARK 500 3 ALA A 63 100.62 -160.85 REMARK 500 3 ALA A 64 -60.31 -161.00 REMARK 500 3 GLU A 65 114.13 -166.99 REMARK 500 3 THR A 69 88.36 -48.78 REMARK 500 3 GLU A 70 92.51 -170.52 REMARK 500 3 GLU A 71 78.78 -58.45 REMARK 500 3 TYR A 72 -167.86 -70.41 REMARK 500 3 ALA A 73 -55.22 -164.71 REMARK 500 3 ASN A 88 -116.35 -136.70 REMARK 500 3 ASN A 89 68.61 -158.08 REMARK 500 3 PRO A 120 -21.49 -39.00 REMARK 500 3 ASN A 141 108.01 -169.63 REMARK 500 3 THR A 172 -173.23 51.71 REMARK 500 3 ASN A 174 72.80 -155.30 REMARK 500 3 ASN A 175 58.74 -170.16 REMARK 500 4 ILE A 60 92.49 54.78 REMARK 500 4 SER A 61 113.76 -161.90 REMARK 500 4 ALA A 63 69.62 -171.10 REMARK 500 4 ASP A 67 165.70 54.14 REMARK 500 4 ARG A 68 99.61 -172.07 REMARK 500 REMARK 500 THIS ENTRY HAS 298 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17451 RELATED DB: BMRB DBREF 2L9J A 58 177 UNP Q4KRW3 Q4KRW3_HRSV 58 177 SEQADV 2L9J GLY A 57 UNP Q4KRW3 EXPRESSION TAG SEQADV 2L9J PRO A 120 UNP Q4KRW3 LEU 120 ENGINEERED MUTATION SEQRES 1 A 121 GLY SER GLU ILE SER GLY ALA ALA GLU LEU ASP ARG THR SEQRES 2 A 121 GLU GLU TYR ALA LEU GLY VAL VAL GLY VAL LEU GLU SER SEQRES 3 A 121 TYR ILE GLY SER ILE ASN ASN ILE THR LYS GLN SER ALA SEQRES 4 A 121 CYS VAL ALA MET SER LYS LEU LEU THR GLU LEU ASN SER SEQRES 5 A 121 ASP ASP ILE LYS LYS LEU ARG ASP ASN GLU GLU PRO ASN SEQRES 6 A 121 SER PRO LYS ILE ARG VAL TYR ASN THR VAL ILE SER TYR SEQRES 7 A 121 ILE GLU SER ASN ARG LYS ASN ASN LYS GLN THR ILE HIS SEQRES 8 A 121 LEU LEU LYS ARG LEU PRO ALA ASP VAL LEU LYS LYS THR SEQRES 9 A 121 ILE LYS ASN THR LEU ASP ILE HIS LYS SER ILE THR ILE SEQRES 10 A 121 ASN ASN PRO LYS HELIX 1 1 GLY A 75 SER A 86 1 12 HELIX 2 2 THR A 91 THR A 104 1 14 HELIX 3 3 ASN A 107 ASN A 117 1 11 HELIX 4 4 PRO A 123 ASN A 141 1 19 HELIX 5 5 ASN A 141 LEU A 152 1 12 HELIX 6 6 PRO A 153 ILE A 171 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1