HEADER TRANSCRIPTION 22-FEB-11 2L9R TITLE SOLUTION NMR STRUCTURE OF HOMEOBOX DOMAIN OF HOMEOBOX PROTEIN NKX-3.1 TITLE 2 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 HR6470A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN NKX-3.1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING HOMEOBOX RESIDUES 132-189; COMPND 5 SYNONYM: HOMEOBOX PROTEIN NK-3 HOMOLOG A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NKX3-1, NKX3.1, NKX3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, TRANSCRIPTION FACTOR, KEYWDS 3 TRANSCRIPTION, METHODS DEVELOPMENT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,R.XIAO,H.-W.LEE,K.HAMILTON,C.CICCOSANTI,H.B.WANG,T.B.ACTON, AUTHOR 2 J.K.EVERETT,Y.J.HUANG,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2L9R 1 REMARK SEQADV REVDAT 2 22-FEB-12 2L9R 1 VERSN KEYWDS REVDAT 1 20-APR-11 2L9R 0 JRNL AUTH G.LIU,R.XIAO,H.-W.LEE,K.HAMILTON,C.CICCOSANTI,H.B.WANG, JRNL AUTH 2 T.B.ACTON,J.K.EVERETT,Y.J.HUANG,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF HOMEOBOX DOMAIN OF HOMEOBOX JRNL TITL 2 PROTEIN NKX-3.1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL JRNL TITL 3 GENOMICS CONSORTIUM TARGET HR6470A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L9R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000102134. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.69 MM [U-100% 13C; U-100% 15N] REMARK 210 HR6470A, 90% H2O/10% D2O; 0.65 REMARK 210 MM [U-5% 13C; U-100% 15N] REMARK 210 HR6470A, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, TALOS+ REMARK 210 METHOD USED : DISTANCE GEOMETRY, TORSION ANGLE REMARK 210 DYNAMICS, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 60 96.98 -62.73 REMARK 500 1 GLN A 63 -155.18 -126.47 REMARK 500 2 HIS A 10 98.49 -68.48 REMARK 500 2 LYS A 62 137.16 -170.79 REMARK 500 2 GLN A 63 -77.08 39.39 REMARK 500 2 LEU A 64 -42.03 -160.19 REMARK 500 2 SER A 66 -56.33 -176.90 REMARK 500 4 HIS A 7 79.47 -69.54 REMARK 500 4 SER A 66 41.82 -84.28 REMARK 500 4 LEU A 68 -52.98 -143.69 REMARK 500 5 ARG A 61 -160.88 -66.37 REMARK 500 6 HIS A 10 91.65 -65.04 REMARK 500 6 LYS A 42 17.44 55.70 REMARK 500 6 LYS A 60 109.75 -57.92 REMARK 500 6 LYS A 62 -42.48 -167.03 REMARK 500 7 LEU A 64 -54.60 -122.30 REMARK 500 7 GLU A 67 45.66 -85.40 REMARK 500 8 HIS A 7 -71.54 -82.17 REMARK 500 8 HIS A 10 112.44 -169.41 REMARK 500 8 SER A 65 -68.85 72.14 REMARK 500 9 HIS A 8 84.26 -69.22 REMARK 500 9 SER A 9 35.08 -90.09 REMARK 500 9 LYS A 42 19.74 56.42 REMARK 500 9 LYS A 60 82.12 -67.31 REMARK 500 9 ARG A 61 -43.88 -155.14 REMARK 500 10 LYS A 42 16.69 59.41 REMARK 500 10 THR A 59 -162.78 -116.83 REMARK 500 10 SER A 65 152.60 68.94 REMARK 500 11 HIS A 6 105.96 -161.41 REMARK 500 12 HIS A 4 118.09 -163.41 REMARK 500 13 HIS A 7 92.79 -66.99 REMARK 500 13 SER A 65 -55.31 70.61 REMARK 500 15 HIS A 8 71.98 -100.58 REMARK 500 15 LEU A 64 -52.20 -124.54 REMARK 500 15 SER A 66 -169.62 -129.83 REMARK 500 16 HIS A 8 92.98 -69.01 REMARK 500 17 HIS A 3 -71.15 -135.23 REMARK 500 17 HIS A 4 19.21 58.85 REMARK 500 17 LYS A 60 97.72 -54.08 REMARK 500 17 SER A 66 104.75 60.48 REMARK 500 18 LYS A 60 26.94 -79.92 REMARK 500 18 LEU A 68 134.35 -170.63 REMARK 500 19 HIS A 8 79.49 -69.25 REMARK 500 19 SER A 9 -44.71 -174.99 REMARK 500 19 LYS A 42 14.43 59.44 REMARK 500 20 HIS A 3 65.01 -115.79 REMARK 500 20 HIS A 6 88.91 62.58 REMARK 500 20 SER A 9 96.96 -60.55 REMARK 500 20 LYS A 62 88.61 -69.55 REMARK 500 20 SER A 66 101.03 -58.79 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17484 RELATED DB: BMRB REMARK 900 RELATED ID: HR6470A RELATED DB: TARGETDB DBREF 2L9R A 12 69 UNP Q99801 NKX31_HUMAN 132 189 SEQADV 2L9R MET A 1 UNP Q99801 EXPRESSION TAG SEQADV 2L9R GLY A 2 UNP Q99801 EXPRESSION TAG SEQADV 2L9R HIS A 3 UNP Q99801 EXPRESSION TAG SEQADV 2L9R HIS A 4 UNP Q99801 EXPRESSION TAG SEQADV 2L9R HIS A 5 UNP Q99801 EXPRESSION TAG SEQADV 2L9R HIS A 6 UNP Q99801 EXPRESSION TAG SEQADV 2L9R HIS A 7 UNP Q99801 EXPRESSION TAG SEQADV 2L9R HIS A 8 UNP Q99801 EXPRESSION TAG SEQADV 2L9R SER A 9 UNP Q99801 EXPRESSION TAG SEQADV 2L9R HIS A 10 UNP Q99801 EXPRESSION TAG SEQADV 2L9R MET A 11 UNP Q99801 EXPRESSION TAG SEQRES 1 A 69 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET SER HIS SEQRES 2 A 69 THR GLN VAL ILE GLU LEU GLU ARG LYS PHE SER HIS GLN SEQRES 3 A 69 LYS TYR LEU SER ALA PRO GLU ARG ALA HIS LEU ALA LYS SEQRES 4 A 69 ASN LEU LYS LEU THR GLU THR GLN VAL LYS ILE TRP PHE SEQRES 5 A 69 GLN ASN ARG ARG TYR LYS THR LYS ARG LYS GLN LEU SER SEQRES 6 A 69 SER GLU LEU GLY HELIX 1 1 SER A 12 GLN A 26 1 15 HELIX 2 2 SER A 30 LEU A 41 1 12 HELIX 3 3 THR A 44 THR A 59 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1