HEADER MEMBRANE PROTEIN 24-FEB-11 2L9U TITLE SPATIAL STRUCTURE OF DIMERIC ERBB3 TRANSMEMBRANE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 640-670; COMPND 5 SYNONYM: PROTO-ONCOGENE-LIKE PROTEIN C-ERBB-3, TYROSINE KINASE-TYPE COMPND 6 CELL SURFACE RECEPTOR HER3; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERBB3, HER3; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-22B KEYWDS TRANSMENBRANE DIMER, MEMBRANE PROTEIN, ERBB, EGFR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.S.MINEEV,A.S.ARSENIEV REVDAT 3 14-JUN-23 2L9U 1 REMARK SEQADV REVDAT 2 06-SEP-17 2L9U 1 JRNL REVDAT 1 18-MAY-11 2L9U 0 JRNL AUTH K.S.MINEEV,N.F.KHABIBULLINA,E.N.LYUKMANOVA,D.A.DOLGIKH, JRNL AUTH 2 M.P.KIRPICHNIKOV,A.S.ARSENIEV JRNL TITL SPATIAL STRUCTURE AND DIMER--MONOMER EQUILIBRIUM OF THE JRNL TITL 2 ERBB3 TRANSMEMBRANE DOMAIN IN DPC MICELLES. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1808 2081 2011 JRNL REFN ISSN 0006-3002 JRNL PMID 21575594 JRNL DOI 10.1016/J.BBAMEM.2011.04.017 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102137. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 ERBB3TM-1, 1 MM ERBB3TM-2, 80 MM REMARK 210 [U-99% 2H] DPC-3, 1 MM SODIUM REMARK 210 AZIDE-4, 90% H2O/10% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N] ERBB3TM- REMARK 210 5, 1 MM ERBB3TM-6, 80 MM [U-99% REMARK 210 2H] DPC-7, 1 MM SODIUM AZIDE-8, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 15N,13C-FILTERED, REMARK 210 13C-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.5, TOPSPIN 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR B 640 -50.93 -129.06 REMARK 500 1 ARG B 670 65.83 -112.16 REMARK 500 2 THR B 640 -50.92 -130.35 REMARK 500 2 HIS B 673 -74.66 -52.08 REMARK 500 2 HIS B 674 -169.76 51.99 REMARK 500 2 HIS B 675 89.93 54.24 REMARK 500 3 THR B 640 -50.91 -129.49 REMARK 500 3 ARG B 669 -70.53 -55.48 REMARK 500 3 ARG B 670 68.67 -117.94 REMARK 500 3 HIS B 673 -64.29 -149.04 REMARK 500 3 HIS B 675 -70.02 71.40 REMARK 500 4 THR B 640 -58.97 -135.52 REMARK 500 5 ARG B 639 91.90 54.71 REMARK 500 5 THR B 640 -50.12 -132.44 REMARK 500 5 HIS B 672 -175.36 -63.04 REMARK 500 5 HIS B 674 82.01 57.21 REMARK 500 6 ARG B 639 91.99 54.75 REMARK 500 6 THR B 640 -50.30 -141.27 REMARK 500 6 HIS B 671 -68.92 71.14 REMARK 500 6 HIS B 675 82.59 52.53 REMARK 500 7 HIS B 674 38.68 -142.95 REMARK 500 8 ARG A 669 -70.71 -55.28 REMARK 500 8 ARG A 670 69.33 -119.87 REMARK 500 8 THR B 640 -50.95 -126.76 REMARK 500 8 ARG B 670 35.57 -94.96 REMARK 500 8 HIS B 675 -68.38 -120.73 REMARK 500 9 THR B 640 -51.11 -128.04 REMARK 500 9 HIS B 671 -68.78 71.24 REMARK 500 9 HIS B 672 91.95 56.80 REMARK 500 10 ARG B 639 91.94 54.72 REMARK 500 10 THR B 640 -50.17 -138.60 REMARK 500 10 HIS B 672 79.16 -103.95 REMARK 500 10 HIS B 674 -74.09 -142.22 REMARK 500 11 ARG B 639 91.86 54.79 REMARK 500 11 THR B 640 -50.50 -131.27 REMARK 500 11 ARG B 670 69.37 -118.67 REMARK 500 11 HIS B 672 32.30 -147.67 REMARK 500 11 HIS B 673 -71.71 -135.85 REMARK 500 12 ARG B 639 89.67 53.03 REMARK 500 12 ARG B 670 69.24 -118.95 REMARK 500 12 HIS B 672 82.74 -159.11 REMARK 500 12 HIS B 674 64.88 -163.37 REMARK 500 13 HIS A 673 104.37 -52.20 REMARK 500 13 ARG B 639 91.57 54.29 REMARK 500 13 THR B 640 -49.08 -140.44 REMARK 500 13 HIS B 674 83.81 -150.22 REMARK 500 14 THR B 640 -51.12 -132.00 REMARK 500 14 HIS B 673 -58.88 -122.58 REMARK 500 14 HIS B 674 170.76 62.15 REMARK 500 15 ARG B 639 91.86 54.82 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17488 RELATED DB: BMRB DBREF 2L9U A 639 670 UNP P21860 ERBB3_HUMAN 639 670 DBREF 2L9U B 639 670 UNP P21860 ERBB3_HUMAN 639 670 SEQADV 2L9U MET A 637 UNP P21860 EXPRESSION TAG SEQADV 2L9U GLY A 638 UNP P21860 EXPRESSION TAG SEQADV 2L9U ARG A 639 UNP P21860 LYS 639 ENGINEERED MUTATION SEQADV 2L9U HIS A 671 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS A 672 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS A 673 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS A 674 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS A 675 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS A 676 UNP P21860 EXPRESSION TAG SEQADV 2L9U MET B 637 UNP P21860 EXPRESSION TAG SEQADV 2L9U GLY B 638 UNP P21860 EXPRESSION TAG SEQADV 2L9U ARG B 639 UNP P21860 LYS 639 ENGINEERED MUTATION SEQADV 2L9U HIS B 671 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS B 672 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS B 673 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS B 674 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS B 675 UNP P21860 EXPRESSION TAG SEQADV 2L9U HIS B 676 UNP P21860 EXPRESSION TAG SEQRES 1 A 40 MET GLY ARG THR HIS LEU THR MET ALA LEU THR VAL ILE SEQRES 2 A 40 ALA GLY LEU VAL VAL ILE PHE MET MET LEU GLY GLY THR SEQRES 3 A 40 PHE LEU TYR TRP ARG GLY ARG ARG HIS HIS HIS HIS HIS SEQRES 4 A 40 HIS SEQRES 1 B 40 MET GLY ARG THR HIS LEU THR MET ALA LEU THR VAL ILE SEQRES 2 B 40 ALA GLY LEU VAL VAL ILE PHE MET MET LEU GLY GLY THR SEQRES 3 B 40 PHE LEU TYR TRP ARG GLY ARG ARG HIS HIS HIS HIS HIS SEQRES 4 B 40 HIS HELIX 1 1 THR A 640 HIS A 672 1 33 HELIX 2 2 THR B 640 ARG B 670 1 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1