HEADER SPLICING, RNA BINDING PROTEIN 25-FEB-11 2L9W TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF PRP24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: U4/U6 SNRNA-ASSOCIATED-SPLICING FACTOR PRP24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL RESIDUES 292-400; COMPND 5 SYNONYM: U4/U6 SNRNP PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PRP24, YM8156.10C, YMR268C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-21B KEYWDS RRM, U6 SNRNP, SPLICING, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.A.MARTIN-TUMASZ,S.E.BUTCHER REVDAT 3 14-JUN-23 2L9W 1 REMARK SEQADV REVDAT 2 05-OCT-11 2L9W 1 JRNL VERSN REVDAT 1 29-JUN-11 2L9W 0 JRNL AUTH S.MARTIN-TUMASZ,A.C.RICHIE,L.J.CLOS,D.A.BROW,S.E.BUTCHER JRNL TITL A NOVEL OCCLUDED RNA RECOGNITION MOTIF IN PRP24 UNWINDS THE JRNL TITL 2 U6 RNA INTERNAL STEM LOOP. JRNL REF NUCLEIC ACIDS RES. V. 39 7837 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21653550 JRNL DOI 10.1093/NAR/GKR455 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, HADDOCK 2.0 REMARK 3 AUTHORS : VARIAN (VNMRJ), ALEXANDRE BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102139. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 304 REMARK 210 PH : 6; 6 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 600 UM [U-99% 13C; U-99% 15N] REMARK 210 L4W, 18 MM POTASSIUM PHOSPHATE REMARK 210 PH 6, 45 MM POTASSIUM CHLORIDE, REMARK 210 0.9 MM DTT, 90% H2O/10% D2O; 600 REMARK 210 UM [U-99% 13C; U-99% 15N] L4W, REMARK 210 18 MM [U-99% 2H] POTASSIUM REMARK 210 PHOSPHATE PH 6, 45 MM [U-99% 2H] REMARK 210 POTASSIUM CHLORIDE, 100% D2O; REMARK 210 600 UM [U-99% 13C; U-99% 15N] REMARK 210 L4W, 18 MM POTASSIUM PHOSPHATE REMARK 210 PH 6, 45 MM POTASSIUM CHLORIDE, REMARK 210 1 UM DSS, 90% H2O/10% D2O; 600 REMARK 210 UM L4W, 18 MM [U-99% 2H] REMARK 210 POTASSIUM PHOSPHATE PH 6, 45 MM REMARK 210 [U-99% 2H] POTASSIUM CHLORIDE, REMARK 210 100% D2O; 600 UM [U-99% 13C; U- REMARK 210 99% 15N] L4W, 18 MM POTASSIUM REMARK 210 PHOSPHATE PH 6, 45 MM POTASSIUM REMARK 210 CHLORIDE, 0.9 MM DTT, 6.5 % DMPC/ REMARK 210 DHPC Q=3, 0.67 MG/ML CTAB, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D 1H-15N NOESY; 3D HNCACB; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H NOESY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D-NHSQC-IPAP; 3D- REMARK 210 JMODULATED-CHSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM; DMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRDRAW, SPARKY, TALOS, REMARK 210 HADDOCK 2.0, UNIO 08, NMR REMARK 210 STRUCTURE TOOLS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 291 REMARK 465 HIS A 400 REMARK 465 TRP A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 297 HZ3 LYS A 345 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 312 30.23 -77.64 REMARK 500 1 LYS A 345 147.54 -176.74 REMARK 500 1 PHE A 352 35.72 179.06 REMARK 500 1 ASN A 353 79.74 18.05 REMARK 500 1 PHE A 359 -156.52 -67.10 REMARK 500 1 THR A 386 -136.54 -108.32 REMARK 500 2 SER A 304 126.01 -38.91 REMARK 500 2 ASN A 306 109.72 -57.72 REMARK 500 2 PHE A 317 63.27 -116.12 REMARK 500 2 PRO A 318 61.47 -112.52 REMARK 500 2 LYS A 345 152.37 177.85 REMARK 500 2 PHE A 352 -33.49 -173.40 REMARK 500 2 ASN A 353 50.92 113.98 REMARK 500 2 PHE A 359 -175.98 -62.53 REMARK 500 2 SER A 375 -140.63 -98.63 REMARK 500 2 THR A 386 -136.87 -113.75 REMARK 500 3 PHE A 317 63.92 -115.91 REMARK 500 3 PHE A 352 -35.09 -157.26 REMARK 500 3 ASN A 353 76.49 95.36 REMARK 500 3 PHE A 359 -175.66 -68.33 REMARK 500 3 SER A 375 -157.59 -96.48 REMARK 500 3 THR A 386 -146.99 -114.51 REMARK 500 4 SER A 304 135.19 -35.54 REMARK 500 4 THR A 312 20.96 -77.54 REMARK 500 4 PHE A 317 72.11 -114.92 REMARK 500 4 SER A 320 -174.86 -66.98 REMARK 500 4 PHE A 352 36.18 -173.42 REMARK 500 4 ASN A 353 80.85 11.96 REMARK 500 4 PHE A 359 -79.31 -52.59 REMARK 500 4 ARG A 360 -26.71 -157.92 REMARK 500 4 SER A 375 -147.97 -97.94 REMARK 500 4 THR A 386 -135.63 -113.73 REMARK 500 5 LEU A 310 -9.39 -57.27 REMARK 500 5 THR A 312 17.63 -69.27 REMARK 500 5 SER A 320 -171.18 -61.90 REMARK 500 5 SER A 350 31.20 -96.64 REMARK 500 5 PHE A 352 28.73 -161.78 REMARK 500 5 ASN A 353 85.36 21.74 REMARK 500 5 PHE A 359 -71.17 -57.09 REMARK 500 5 ARG A 360 -29.12 -170.09 REMARK 500 5 SER A 375 -149.75 -97.53 REMARK 500 5 THR A 386 -145.05 -106.41 REMARK 500 6 SER A 304 134.36 -30.26 REMARK 500 6 GLU A 311 -61.60 -94.31 REMARK 500 6 THR A 312 22.66 -67.27 REMARK 500 6 PHE A 317 65.04 -117.45 REMARK 500 6 LYS A 345 144.91 -173.68 REMARK 500 6 SER A 350 34.72 -92.89 REMARK 500 6 PHE A 352 31.57 -171.50 REMARK 500 6 ASN A 353 62.86 21.79 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16243 RELATED DB: BMRB REMARK 900 PRP24-23 REMARK 900 RELATED ID: 16244 RELATED DB: BMRB REMARK 900 PRP24-23 + RNA REMARK 900 RELATED ID: 16230 RELATED DB: BMRB REMARK 900 PRP24-2 + RNA REMARK 900 RELATED ID: 16246 RELATED DB: BMRB REMARK 900 PRP24-2 REMARK 900 RELATED ID: 7070 RELATED DB: BMRB REMARK 900 PRP24-12 REMARK 900 RELATED ID: 2GO9 RELATED DB: PDB REMARK 900 PRP24-12 REMARK 900 RELATED ID: 2GHP RELATED DB: PDB REMARK 900 PRP24-123 REMARK 900 RELATED ID: 2KH9 RELATED DB: PDB REMARK 900 PRP24-2 + RNA REMARK 900 RELATED ID: 17490 RELATED DB: BMRB DBREF 2L9W A 292 400 UNP P49960 PRP24_YEAST 292 400 SEQADV 2L9W MET A 291 UNP P49960 INITIATING METHIONINE SEQADV 2L9W TRP A 401 UNP P49960 EXPRESSION TAG SEQADV 2L9W HIS A 402 UNP P49960 EXPRESSION TAG SEQADV 2L9W HIS A 403 UNP P49960 EXPRESSION TAG SEQADV 2L9W HIS A 404 UNP P49960 EXPRESSION TAG SEQADV 2L9W HIS A 405 UNP P49960 EXPRESSION TAG SEQADV 2L9W HIS A 406 UNP P49960 EXPRESSION TAG SEQADV 2L9W HIS A 407 UNP P49960 EXPRESSION TAG SEQRES 1 A 117 MET PHE LEU GLU ARG ASN GLU VAL LYS ARG LEU LEU ALA SEQRES 2 A 117 SER ARG ASN SER LYS GLU LEU GLU THR LEU ILE CYS LEU SEQRES 3 A 117 PHE PRO LEU SER ASP LYS VAL SER PRO SER LEU ILE CYS SEQRES 4 A 117 GLN PHE LEU GLN GLU GLU ILE HIS ILE ASN GLU LYS ASP SEQRES 5 A 117 ILE ARG LYS ILE LEU LEU VAL SER ASP PHE ASN GLY ALA SEQRES 6 A 117 ILE ILE ILE PHE ARG ASP SER LYS PHE ALA ALA LYS MET SEQRES 7 A 117 LEU MET ILE LEU ASN GLY SER GLN PHE GLN GLY LYS VAL SEQRES 8 A 117 ILE ARG SER GLY THR ILE ASN ASP MET LYS ARG TYR TYR SEQRES 9 A 117 ASN ASN GLN GLN ASN HIS TRP HIS HIS HIS HIS HIS HIS HELIX 1 1 LEU A 293 SER A 304 1 12 HELIX 2 2 SER A 324 ILE A 336 1 13 HELIX 3 3 ASP A 361 ASN A 373 1 13 HELIX 4 4 THR A 386 ASN A 399 1 14 SHEET 1 A 5 LYS A 345 VAL A 349 0 SHEET 2 A 5 GLY A 354 ILE A 358 -1 O GLY A 354 N VAL A 349 SHEET 3 A 5 ILE A 314 PHE A 317 -1 N LEU A 316 O ALA A 355 SHEET 4 A 5 LYS A 380 GLY A 385 -1 O GLY A 385 N CYS A 315 SHEET 5 A 5 SER A 375 PHE A 377 -1 N PHE A 377 O LYS A 380 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1