HEADER SUGAR BINDING PROTEIN 26-FEB-11 2L9Y TITLE SOLUTION STRUCTURE OF THE MOCVNH-LYSM MODULE FROM THE RICE BLAST TITLE 2 FUNGUS MAGNAPORTHE ORYZAE PROTEIN (MGG_03307) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CVNH-LYSM LECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 174-340; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNAPORTHE ORYZAE 70-15; SOURCE 3 ORGANISM_COMMON: RICE BLAST FUNGUS; SOURCE 4 ORGANISM_TAXID: 242507; SOURCE 5 GENE: MGG_03307; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B; SOURCE 11 OTHER_DETAILS: EXPRESSED AS HIS-TAG FUSION PROTEIN KEYWDS CVNH, LECTIN, CARBOHYDRATE, SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR L.M.I.KOHARUDIN,A.R.VISCOMI,B.MONTANINI,M.J.KERSHAW,N.J.TALBOT, AUTHOR 2 S.OTTONELLO,A.M.GRONENBORN REVDAT 3 01-MAY-24 2L9Y 1 REMARK REVDAT 2 22-JUN-11 2L9Y 1 JRNL REVDAT 1 23-MAR-11 2L9Y 0 JRNL AUTH L.M.KOHARUDIN,A.R.VISCOMI,B.MONTANINI,M.J.KERSHAW, JRNL AUTH 2 N.J.TALBOT,S.OTTONELLO,A.M.GRONENBORN JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF A CVNH-LYSM LECTIN EXPRESSED JRNL TITL 2 DURING PLANT INFECTION BY THE RICE BLAST FUNGUS MAGNAPORTHE JRNL TITL 3 ORYZAE. JRNL REF STRUCTURE V. 19 662 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21565701 JRNL DOI 10.1016/J.STR.2011.03.004 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE 25 LOWEST ENERGY STRUCTURES WERE REMARK 3 FURTHER REFINED USING EXPLICIT WATER. REMARK 4 REMARK 4 2L9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102141. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 5.0; 5.0 REMARK 210 IONIC STRENGTH : 0.020; 0.020 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 15N] PROTEIN, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-100% 13C; REMARK 210 U-100% 15N] PROTEIN, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D H(CCO)NH; 3D C(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.2.2_01, CYANA REMARK 210 2.1, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 24 HG1 THR A 34 1.56 REMARK 500 O VAL A 67 H GLY A 102 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 3 -89.43 -96.51 REMARK 500 1 ALA A 19 -10.80 -149.62 REMARK 500 1 TYR A 42 -31.70 -136.82 REMARK 500 1 VAL A 53 -76.25 65.29 REMARK 500 1 SER A 54 26.86 -156.44 REMARK 500 1 LEU A 98 117.16 72.17 REMARK 500 1 SER A 113 -47.20 -152.36 REMARK 500 2 TYR A 3 -94.05 -126.74 REMARK 500 2 ALA A 19 -12.42 -148.67 REMARK 500 2 TYR A 42 -33.86 -134.01 REMARK 500 2 LEU A 98 114.61 69.88 REMARK 500 2 SER A 123 30.55 -145.75 REMARK 500 2 ASP A 154 -7.84 -58.99 REMARK 500 3 TYR A 3 -89.12 -121.94 REMARK 500 3 ALA A 19 -6.45 -148.66 REMARK 500 3 TYR A 42 -33.35 -131.34 REMARK 500 3 VAL A 53 62.09 30.45 REMARK 500 3 ILE A 93 -169.22 -103.57 REMARK 500 3 LEU A 98 119.46 72.65 REMARK 500 3 ASP A 154 -8.05 -58.26 REMARK 500 4 TYR A 3 -83.59 -139.75 REMARK 500 4 ALA A 19 -9.31 -145.28 REMARK 500 4 TYR A 42 -32.66 -131.44 REMARK 500 4 LEU A 98 112.44 70.68 REMARK 500 4 SER A 113 -87.98 -142.93 REMARK 500 4 ASP A 154 -7.97 -57.61 REMARK 500 5 ASN A 2 -69.41 -91.85 REMARK 500 5 TYR A 3 -100.46 -132.55 REMARK 500 5 ASP A 17 77.63 -103.47 REMARK 500 5 ALA A 19 -13.44 -149.53 REMARK 500 5 LEU A 98 115.88 68.71 REMARK 500 5 ASP A 154 -9.09 -58.52 REMARK 500 6 TYR A 3 -61.34 -133.16 REMARK 500 6 ALA A 19 -12.40 -146.33 REMARK 500 6 LEU A 98 114.17 73.97 REMARK 500 7 ASN A 2 -75.64 -138.25 REMARK 500 7 TYR A 3 -97.00 -128.70 REMARK 500 7 ALA A 19 -12.10 -148.56 REMARK 500 7 TYR A 42 -31.24 -132.02 REMARK 500 7 LEU A 98 115.13 67.62 REMARK 500 7 ASN A 119 30.14 71.14 REMARK 500 7 ASP A 154 -7.76 -58.32 REMARK 500 8 ASN A 2 -73.60 -82.81 REMARK 500 8 TYR A 3 -88.02 -130.12 REMARK 500 8 ALA A 19 -7.86 -148.69 REMARK 500 8 TYR A 42 -32.67 -131.44 REMARK 500 8 LEU A 98 113.50 68.55 REMARK 500 8 SER A 113 83.23 75.89 REMARK 500 8 ALA A 117 -35.69 -131.49 REMARK 500 8 ASP A 154 -9.40 -56.41 REMARK 500 REMARK 500 THIS ENTRY HAS 159 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17493 RELATED DB: BMRB DBREF 2L9Y A 1 167 UNP A4R7A7 A4R7A7_MAGO7 174 340 SEQRES 1 A 167 GLY ASN TYR ALA GLY ASN PHE SER GLY SER SER ARG ASP SEQRES 2 A 167 ILE CYS LEU ASP GLY ALA ARG LEU ARG ALA GLU CYS ARG SEQRES 3 A 167 ARG GLY ASP GLY GLY TYR SER THR SER VAL ILE ASP LEU SEQRES 4 A 167 ASN ARG TYR LEU SER ASN ASP ASN GLY HIS PHE ARG TRP SEQRES 5 A 167 VAL SER GLY GLY GLY GLY GLY GLY GLY THR ALA THR VAL SEQRES 6 A 167 THR VAL GLN GLN GLY ASP THR LEU ARG ASP ILE GLY ARG SEQRES 7 A 167 ARG PHE ASP CYS ASP PHE HIS GLU ILE ALA ARG ARG ASN SEQRES 8 A 167 ASN ILE GLN ASN GLU ASP LEU ILE TYR PRO GLY GLN VAL SEQRES 9 A 167 LEU GLN VAL PRO THR LYS GLY GLY SER GLY GLY GLY ALA SEQRES 10 A 167 GLY ASN PHE TRP ASP SER ALA ARG ASP VAL ARG LEU VAL SEQRES 11 A 167 ASP GLY GLY LYS VAL LEU GLU ALA GLU LEU ARG TYR SER SEQRES 12 A 167 GLY GLY TRP ASN ARG SER ARG ILE TYR LEU ASP GLU HIS SEQRES 13 A 167 ILE GLY ASN ARG ASN GLY GLU LEU ILE HIS CYS HELIX 1 1 ASN A 6 SER A 10 5 5 HELIX 2 2 THR A 72 PHE A 80 1 9 HELIX 3 3 ASP A 83 ASN A 92 1 10 HELIX 4 4 GLN A 94 LEU A 98 5 5 HELIX 5 5 ASN A 119 ASP A 122 5 4 HELIX 6 6 TYR A 152 GLU A 155 5 4 SHEET 1 A 2 ARG A 20 ARG A 27 0 SHEET 2 A 2 GLY A 31 ASP A 38 -1 O SER A 35 N ALA A 23 SHEET 1 B 2 LEU A 43 ASN A 45 0 SHEET 2 B 2 PHE A 50 TRP A 52 -1 O ARG A 51 N SER A 44 SHEET 1 C 2 ALA A 63 VAL A 67 0 SHEET 2 C 2 GLN A 103 VAL A 107 -1 O GLN A 103 N VAL A 67 SHEET 1 D 3 ALA A 124 VAL A 130 0 SHEET 2 D 3 VAL A 135 TYR A 142 -1 O GLU A 137 N ARG A 128 SHEET 3 D 3 GLY A 145 ILE A 151 -1 O ASN A 147 N LEU A 140 SHEET 1 E 2 ILE A 157 ASN A 159 0 SHEET 2 E 2 LEU A 164 HIS A 166 -1 O ILE A 165 N GLY A 158 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1