HEADER TOXIN 01-MAR-11 2LA1 TITLE EXPRESSION IN PICHIA PASTORIS AND BACKBONE DYNAMICS OF DENDROASPIN, A TITLE 2 THREE FINGER TOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAMBIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DENDROASPIN, GLYCOPROTEIN IIB-IIIA ANTAGONIST, PLATELET COMPND 5 AGGREGATION INHIBITOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENDROASPIS JAMESONI KAIMOSAE; SOURCE 3 ORGANISM_COMMON: EASTERN JAMESON'S MAMBA; SOURCE 4 ORGANISM_TAXID: 8619; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PPICZALPHAA KEYWDS DENDROASPIN, DISINTEGRIN, INTEGRIN, THREE-FINGER FOLD, SNAKE TOXIN, KEYWDS 2 TOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.J.CHUANG,C.H.CHENG,Y.C.CHEN,J.H.SHIU REVDAT 3 14-JUN-23 2LA1 1 REMARK REVDAT 2 19-DEC-12 2LA1 1 JRNL REVDAT 1 07-MAR-12 2LA1 0 JRNL AUTH C.H.CHENG,Y.C.CHEN,J.H.SHIU,Y.T.CHANG,Y.S.CHANG,C.H.HUANG, JRNL AUTH 2 C.Y.CHEN,W.J.CHUANG JRNL TITL DYNAMICS AND FUNCTIONAL DIFFERENCES BETWEEN DENDROASPIN AND JRNL TITL 2 RHODOSTOMIN: INSIGHTS INTO PROTEIN SCAFFOLDS IN INTEGRIN JRNL TITL 3 RECOGNITION JRNL REF PROTEIN SCI. V. 21 1872 2012 JRNL REFN ISSN 0961-8368 JRNL PMID 23033223 JRNL DOI 10.1002/PRO.2169 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, X-PLOR 3.85, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102144. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3.18 MM H2O-1, 90% H2O/10% D2O; REMARK 210 1.92 MM [U-98% 15N] H2O-2, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AURELIA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 2 H LYS A 56 1.50 REMARK 500 O ARG A 1 H CYS A 17 1.54 REMARK 500 O TYR A 23 H GLY A 36 1.56 REMARK 500 O LYS A 24 H TYR A 50 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 10 171.57 -46.84 REMARK 500 1 THR A 28 -150.29 -159.51 REMARK 500 1 PHE A 29 -81.30 -112.84 REMARK 500 1 ASN A 31 -150.84 -81.14 REMARK 500 1 ILE A 32 -66.76 -132.89 REMARK 500 1 PHE A 40 -176.19 -66.65 REMARK 500 1 LYS A 56 30.12 39.55 REMARK 500 1 ASN A 58 45.85 -91.95 REMARK 500 2 LYS A 10 167.37 -46.21 REMARK 500 2 THR A 28 -60.20 -158.77 REMARK 500 2 PHE A 29 -71.29 -113.74 REMARK 500 2 ASP A 30 -64.92 -134.14 REMARK 500 2 ASN A 31 80.61 -150.41 REMARK 500 2 PRO A 42 45.93 -83.01 REMARK 500 2 TYR A 50 74.33 -108.79 REMARK 500 2 LYS A 56 43.89 37.60 REMARK 500 2 ASN A 58 66.73 -68.52 REMARK 500 3 ASP A 30 -35.99 -135.07 REMARK 500 3 ASN A 31 -143.36 -88.61 REMARK 500 3 ILE A 32 -84.67 -159.65 REMARK 500 3 PRO A 42 46.65 -81.66 REMARK 500 3 PRO A 49 -167.61 -73.28 REMARK 500 3 GLU A 53 43.40 -86.16 REMARK 500 3 LYS A 56 25.17 39.47 REMARK 500 4 LYS A 10 -170.46 -55.10 REMARK 500 4 THR A 13 -158.65 -144.49 REMARK 500 4 ASN A 31 -111.01 -143.67 REMARK 500 4 ILE A 32 -66.75 -154.57 REMARK 500 4 PHE A 40 -179.81 -65.92 REMARK 500 4 PRO A 42 42.72 -85.59 REMARK 500 4 GLU A 53 61.97 -119.82 REMARK 500 5 LYS A 10 172.52 -48.20 REMARK 500 5 THR A 28 -138.20 -158.95 REMARK 500 5 ASP A 30 -74.22 -133.59 REMARK 500 5 ASN A 31 78.30 -151.96 REMARK 500 5 PRO A 42 44.49 -77.97 REMARK 500 5 PRO A 49 -157.01 -78.01 REMARK 500 6 PRO A 12 -159.24 -97.43 REMARK 500 6 THR A 14 160.33 -46.75 REMARK 500 6 ILE A 32 -75.37 -102.26 REMARK 500 6 PRO A 42 47.70 -81.70 REMARK 500 6 ARG A 43 -156.23 -71.33 REMARK 500 6 PRO A 49 -162.42 -68.02 REMARK 500 6 GLU A 53 64.17 -117.51 REMARK 500 6 LYS A 56 35.43 38.93 REMARK 500 6 ASN A 58 59.68 -99.10 REMARK 500 7 THR A 9 -97.10 -94.62 REMARK 500 7 PRO A 11 -71.37 -66.50 REMARK 500 7 PRO A 12 -159.65 -68.59 REMARK 500 7 ASP A 30 -65.11 -108.27 REMARK 500 REMARK 500 THIS ENTRY HAS 162 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 1 0.26 SIDE CHAIN REMARK 500 1 ARG A 34 0.29 SIDE CHAIN REMARK 500 1 ARG A 35 0.10 SIDE CHAIN REMARK 500 1 ARG A 43 0.17 SIDE CHAIN REMARK 500 2 ARG A 1 0.30 SIDE CHAIN REMARK 500 2 ARG A 34 0.31 SIDE CHAIN REMARK 500 2 ARG A 35 0.32 SIDE CHAIN REMARK 500 2 ARG A 43 0.16 SIDE CHAIN REMARK 500 3 ARG A 1 0.24 SIDE CHAIN REMARK 500 3 ARG A 35 0.09 SIDE CHAIN REMARK 500 3 ARG A 43 0.27 SIDE CHAIN REMARK 500 4 ARG A 34 0.21 SIDE CHAIN REMARK 500 4 ARG A 35 0.32 SIDE CHAIN REMARK 500 4 ARG A 43 0.18 SIDE CHAIN REMARK 500 5 ARG A 1 0.31 SIDE CHAIN REMARK 500 5 ARG A 34 0.29 SIDE CHAIN REMARK 500 5 ARG A 35 0.17 SIDE CHAIN REMARK 500 5 ARG A 43 0.32 SIDE CHAIN REMARK 500 6 ARG A 1 0.17 SIDE CHAIN REMARK 500 6 ARG A 34 0.24 SIDE CHAIN REMARK 500 6 ARG A 43 0.26 SIDE CHAIN REMARK 500 7 ARG A 1 0.24 SIDE CHAIN REMARK 500 7 ARG A 34 0.30 SIDE CHAIN REMARK 500 7 ARG A 35 0.28 SIDE CHAIN REMARK 500 7 ARG A 43 0.26 SIDE CHAIN REMARK 500 8 ARG A 1 0.31 SIDE CHAIN REMARK 500 8 ARG A 34 0.28 SIDE CHAIN REMARK 500 8 ARG A 35 0.20 SIDE CHAIN REMARK 500 8 ARG A 43 0.31 SIDE CHAIN REMARK 500 9 ARG A 1 0.31 SIDE CHAIN REMARK 500 9 ARG A 35 0.16 SIDE CHAIN REMARK 500 9 ARG A 43 0.30 SIDE CHAIN REMARK 500 10 ARG A 1 0.10 SIDE CHAIN REMARK 500 10 ARG A 34 0.28 SIDE CHAIN REMARK 500 10 ARG A 35 0.18 SIDE CHAIN REMARK 500 10 ARG A 43 0.25 SIDE CHAIN REMARK 500 11 ARG A 1 0.26 SIDE CHAIN REMARK 500 11 ARG A 34 0.12 SIDE CHAIN REMARK 500 11 ARG A 35 0.17 SIDE CHAIN REMARK 500 11 ARG A 43 0.22 SIDE CHAIN REMARK 500 12 ARG A 1 0.31 SIDE CHAIN REMARK 500 12 ARG A 34 0.28 SIDE CHAIN REMARK 500 12 ARG A 43 0.31 SIDE CHAIN REMARK 500 13 ARG A 1 0.26 SIDE CHAIN REMARK 500 13 ARG A 34 0.17 SIDE CHAIN REMARK 500 13 ARG A 35 0.29 SIDE CHAIN REMARK 500 13 ARG A 43 0.23 SIDE CHAIN REMARK 500 14 ARG A 1 0.31 SIDE CHAIN REMARK 500 14 ARG A 34 0.28 SIDE CHAIN REMARK 500 14 ARG A 35 0.26 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 73 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6915 RELATED DB: BMRB DBREF 2LA1 A 1 59 UNP P28375 MAMB_DENJA 1 59 SEQRES 1 A 59 ARG ILE CYS TYR ASN HIS LEU GLY THR LYS PRO PRO THR SEQRES 2 A 59 THR GLU THR CYS GLN GLU ASP SER CYS TYR LYS ASN ILE SEQRES 3 A 59 TRP THR PHE ASP ASN ILE ILE ARG ARG GLY CYS GLY CYS SEQRES 4 A 59 PHE THR PRO ARG GLY ASP MET PRO GLY PRO TYR CYS CYS SEQRES 5 A 59 GLU SER ASP LYS CYS ASN LEU SHEET 1 A 2 ILE A 2 TYR A 4 0 SHEET 2 A 2 THR A 14 THR A 16 -1 O GLU A 15 N CYS A 3 SHEET 1 B 3 ARG A 34 ARG A 35 0 SHEET 2 B 3 CYS A 22 ASN A 25 -1 N ASN A 25 O ARG A 34 SHEET 3 B 3 TYR A 50 CYS A 52 -1 O TYR A 50 N LYS A 24 SSBOND 1 CYS A 3 CYS A 22 1555 1555 2.02 SSBOND 2 CYS A 17 CYS A 37 1555 1555 2.02 SSBOND 3 CYS A 39 CYS A 51 1555 1555 2.02 SSBOND 4 CYS A 52 CYS A 57 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1