HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 04-MAR-11 2LA7 TITLE NMR STRUCTURE OF THE PROTEIN YP_557733.1 FROM BURKHOLDERIA XENOVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 35-179; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 GENE: BXENO_A1143, BXE_A3302; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PSPEEDET KEYWDS PILOT SECRETIN MXIM FOLD, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.JAUDZEMS,P.SERRANO,G.MICHAEL,H.RETO,K.WUTHRICH,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 3 14-JUN-23 2LA7 1 REMARK REVDAT 2 03-AUG-11 2LA7 1 VERSN KEYWDS REVDAT 1 30-MAR-11 2LA7 0 JRNL AUTH K.JAUDZEMS,P.SERRANO,G.MICHAEL,H.RETO,K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE PROTEIN YP_557733.1 FROM BURKHOLDERIA JRNL TITL 2 XENOVORANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, OPAL REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LA7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102150. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.225 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 50 MM SODIUM CHLORIDE, REMARK 210 20 MM SODIUM PHOSPHATE, 4.5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 5D APSY-HACACONH; 4D REMARK 210 APSY-HACANH; 5D APSY-CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO, TOPSPIN, CARA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 TRP A 33 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 6 VAL A 131 CA - CB - CG1 ANGL. DEV. = 10.4 DEGREES REMARK 500 7 VAL A 29 CA - CB - CG1 ANGL. DEV. = 11.3 DEGREES REMARK 500 8 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 9 VAL A 29 CA - CB - CG1 ANGL. DEV. = 12.1 DEGREES REMARK 500 9 TRP A 33 CA - CB - CG ANGL. DEV. = 12.6 DEGREES REMARK 500 11 TRP A 33 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 12 LEU A 54 CB - CG - CD1 ANGL. DEV. = 12.3 DEGREES REMARK 500 13 LEU A 54 CB - CG - CD1 ANGL. DEV. = 12.0 DEGREES REMARK 500 13 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 14 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 14 VAL A 131 CA - CB - CG1 ANGL. DEV. = 11.5 DEGREES REMARK 500 18 LEU A 54 CB - CG - CD1 ANGL. DEV. = 14.6 DEGREES REMARK 500 18 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 19 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 19 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 19 TYR A 108 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 20 VAL A 29 CA - CB - CG1 ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 6 178.39 66.90 REMARK 500 1 PHE A 15 -178.25 64.19 REMARK 500 1 ALA A 19 -41.18 -154.56 REMARK 500 1 THR A 20 21.45 -68.13 REMARK 500 1 ASP A 24 -48.52 -134.57 REMARK 500 1 ALA A 50 76.21 -157.78 REMARK 500 1 THR A 58 48.66 -75.29 REMARK 500 1 THR A 89 95.60 -63.17 REMARK 500 1 ARG A 94 61.29 -103.55 REMARK 500 2 LYS A 3 167.52 174.57 REMARK 500 2 HIS A 4 166.62 63.30 REMARK 500 2 PRO A 5 78.53 -67.89 REMARK 500 2 SER A 7 -166.77 -79.85 REMARK 500 2 ALA A 11 165.91 56.61 REMARK 500 2 PRO A 14 -165.57 -68.87 REMARK 500 2 PHE A 15 71.94 55.58 REMARK 500 2 SER A 27 -60.08 -144.81 REMARK 500 2 TRP A 28 159.54 68.68 REMARK 500 2 SER A 31 -23.36 -144.46 REMARK 500 2 GLN A 35 -170.17 -64.68 REMARK 500 2 THR A 39 99.91 -62.32 REMARK 500 2 ALA A 50 86.70 -157.39 REMARK 500 2 SER A 57 -154.97 -150.23 REMARK 500 2 SER A 66 65.93 -150.63 REMARK 500 3 HIS A 4 163.07 65.37 REMARK 500 3 ASP A 6 175.71 71.30 REMARK 500 3 PRO A 14 -169.79 -65.95 REMARK 500 3 PHE A 15 163.33 73.58 REMARK 500 3 ALA A 18 22.21 -75.03 REMARK 500 3 LEU A 22 50.65 -107.19 REMARK 500 3 SER A 27 -64.87 -136.83 REMARK 500 3 TRP A 28 162.50 66.28 REMARK 500 3 ARG A 63 96.88 -65.60 REMARK 500 3 THR A 89 99.99 -57.59 REMARK 500 3 MET A 98 28.12 47.34 REMARK 500 4 PRO A 2 -177.27 -67.12 REMARK 500 4 ALA A 9 34.52 -86.88 REMARK 500 4 ALA A 18 19.61 -66.80 REMARK 500 4 ALA A 50 83.60 -169.60 REMARK 500 4 SER A 57 -174.26 -172.67 REMARK 500 4 SER A 59 -14.63 -49.12 REMARK 500 4 ASP A 82 29.24 48.70 REMARK 500 4 THR A 89 83.65 -64.42 REMARK 500 5 LYS A 3 34.73 -140.68 REMARK 500 5 PRO A 14 -166.78 -78.99 REMARK 500 5 PHE A 15 77.53 63.27 REMARK 500 5 ALA A 18 31.90 -82.64 REMARK 500 5 SER A 27 -68.42 -149.52 REMARK 500 5 TRP A 28 163.44 69.78 REMARK 500 5 CYS A 71 14.18 -152.48 REMARK 500 REMARK 500 THIS ENTRY HAS 250 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 144 ARG A 145 1 -142.18 REMARK 500 SER A 69 GLY A 70 2 -144.70 REMARK 500 ARG A 142 SER A 143 2 148.18 REMARK 500 ASP A 24 ASP A 25 5 148.58 REMARK 500 ALA A 65 SER A 66 5 141.28 REMARK 500 ARG A 142 SER A 143 5 146.27 REMARK 500 HIS A 64 ALA A 65 6 149.67 REMARK 500 ARG A 123 ALA A 124 8 147.80 REMARK 500 GLY A 135 ASP A 136 12 149.73 REMARK 500 ASP A 25 THR A 26 14 -149.12 REMARK 500 GLY A 70 CYS A 71 15 141.66 REMARK 500 GLY A 76 SER A 77 15 -146.54 REMARK 500 GLN A 129 LEU A 130 18 149.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 TYR A 108 0.08 SIDE CHAIN REMARK 500 7 ARG A 73 0.10 SIDE CHAIN REMARK 500 8 ARG A 41 0.10 SIDE CHAIN REMARK 500 8 TYR A 78 0.07 SIDE CHAIN REMARK 500 10 TYR A 74 0.08 SIDE CHAIN REMARK 500 12 TYR A 108 0.11 SIDE CHAIN REMARK 500 12 PHE A 140 0.10 SIDE CHAIN REMARK 500 13 TYR A 78 0.07 SIDE CHAIN REMARK 500 13 PHE A 140 0.09 SIDE CHAIN REMARK 500 13 ARG A 145 0.09 SIDE CHAIN REMARK 500 14 TYR A 74 0.08 SIDE CHAIN REMARK 500 15 TYR A 78 0.09 SIDE CHAIN REMARK 500 16 ARG A 73 0.08 SIDE CHAIN REMARK 500 16 ARG A 145 0.08 SIDE CHAIN REMARK 500 19 ARG A 63 0.10 SIDE CHAIN REMARK 500 19 TYR A 74 0.10 SIDE CHAIN REMARK 500 19 TYR A 108 0.07 SIDE CHAIN REMARK 500 19 ARG A 123 0.09 SIDE CHAIN REMARK 500 20 TYR A 78 0.13 SIDE CHAIN REMARK 500 20 TYR A 108 0.09 SIDE CHAIN REMARK 500 20 ARG A 145 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17509 RELATED DB: BMRB REMARK 900 RELATED ID: 396231 RELATED DB: TARGETDB DBREF 2LA7 A 1 145 UNP Q142Q8 Q142Q8_BURXL 35 179 SEQRES 1 A 145 ILE PRO LYS HIS PRO ASP SER GLU ALA VAL ALA PRO ASP SEQRES 2 A 145 PRO PHE ASN PRO ALA ALA THR GLN LEU LEU ASP ASP THR SEQRES 3 A 145 SER TRP VAL LEU SER ALA TRP LYS GLN ALA ASP GLY THR SEQRES 4 A 145 ALA ARG ALA VAL PRO SER ALA ASP GLN GLY ALA PRO ILE SEQRES 5 A 145 THR LEU THR LEU SER THR SER THR GLY GLN ARG HIS ALA SEQRES 6 A 145 SER GLY PHE SER GLY CYS ASN ARG TYR MET GLY SER TYR SEQRES 7 A 145 ALA LEU LYS ASP GLY LYS LEU SER PHE GLY THR LEU GLY SEQRES 8 A 145 GLY THR ARG MET ALA CYS MET THR PRO GLY GLY GLN ILE SEQRES 9 A 145 GLU GLY ALA TYR LEU ASN ALA LEU THR HIS ILE ASP ARG SEQRES 10 A 145 THR GLY VAL GLN MET ARG ALA PRO GLN GLN MET GLN LEU SEQRES 11 A 145 VAL LEU ASP ASN GLY ASP THR LEU THR PHE ASP ARG SER SEQRES 12 A 145 THR ARG HELIX 1 1 THR A 99 ILE A 104 1 6 HELIX 2 2 ILE A 104 ALA A 111 1 8 SHEET 1 A 3 LYS A 84 PHE A 87 0 SHEET 2 A 3 ARG A 73 LYS A 81 -1 N LYS A 81 O LYS A 84 SHEET 3 A 3 GLY A 91 GLY A 92 -1 O GLY A 91 N MET A 75 SHEET 1 B 8 LYS A 84 PHE A 87 0 SHEET 2 B 8 ARG A 73 LYS A 81 -1 N LYS A 81 O LYS A 84 SHEET 3 B 8 HIS A 64 PHE A 68 -1 N ALA A 65 O GLY A 76 SHEET 4 B 8 THR A 53 SER A 57 -1 N THR A 55 O SER A 66 SHEET 5 B 8 THR A 26 LYS A 34 -1 N THR A 26 O LEU A 56 SHEET 6 B 8 THR A 137 ARG A 142 -1 O THR A 137 N LYS A 34 SHEET 7 B 8 GLN A 127 VAL A 131 -1 N MET A 128 O PHE A 140 SHEET 8 B 8 ARG A 117 GLY A 119 -1 N GLY A 119 O GLN A 129 SSBOND 1 CYS A 71 CYS A 97 1555 1555 2.32 CISPEP 1 ALA A 124 PRO A 125 1 9.90 CISPEP 2 ALA A 124 PRO A 125 2 -12.75 CISPEP 3 ALA A 124 PRO A 125 3 -6.70 CISPEP 4 ALA A 124 PRO A 125 4 -1.34 CISPEP 5 ALA A 124 PRO A 125 5 5.93 CISPEP 6 ALA A 124 PRO A 125 6 -2.55 CISPEP 7 ALA A 124 PRO A 125 7 5.29 CISPEP 8 ALA A 124 PRO A 125 8 -8.43 CISPEP 9 ALA A 124 PRO A 125 9 1.88 CISPEP 10 ALA A 124 PRO A 125 10 3.64 CISPEP 11 ALA A 124 PRO A 125 11 4.88 CISPEP 12 ALA A 124 PRO A 125 12 4.58 CISPEP 13 ALA A 124 PRO A 125 13 -0.88 CISPEP 14 ALA A 124 PRO A 125 14 -14.68 CISPEP 15 ALA A 124 PRO A 125 15 6.16 CISPEP 16 ALA A 124 PRO A 125 16 3.54 CISPEP 17 ALA A 124 PRO A 125 17 -1.10 CISPEP 18 ALA A 124 PRO A 125 18 -8.79 CISPEP 19 ALA A 124 PRO A 125 19 15.97 CISPEP 20 ALA A 124 PRO A 125 20 -2.24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1