HEADER MEMBRANE PROTEIN 11-MAR-11 2LAE TITLE NMR SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE E. COLI TITLE 2 LIPOPROTEIN BAMC COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN 34; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 229-344; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: NLPB, DAPX, B2477, JW2462; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET41B KEYWDS BETA-BARREL ASSEMBLY MACHINERY, BAM, BAMC, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 9 AUTHOR A.PARDI,L.WARNER REVDAT 5 27-APR-16 2LAE 1 SEQADV SEQRES REVDAT 4 12-OCT-11 2LAE 1 TITLE REVDAT 3 10-AUG-11 2LAE 1 JRNL VERSN REVDAT 2 15-JUN-11 2LAE 1 TITLE REVDAT 1 01-JUN-11 2LAE 0 JRNL AUTH L.R.WARNER,K.VARGA,O.F.LANGE,S.L.BAKER,D.BAKER,M.C.SOUSA, JRNL AUTH 2 A.PARDI JRNL TITL STRUCTURE OF THE BAMC TWO-DOMAIN PROTEIN OBTAINED BY ROSETTA JRNL TITL 2 WITH A LIMITED NMR DATA SET. JRNL REF J.MOL.BIOL. V. 411 83 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21624375 JRNL DOI 10.1016/J.JMB.2011.05.022 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-NOE-RDC_ROSETTA REMARK 3 AUTHORS : DAVID BAKER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAR-11. REMARK 100 THE RCSB ID CODE IS RCSB102156. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA, REMARK 210 0.02 % SODIUM AZIDE, 1 X HALT, REMARK 210 90% H2O/10% D2O; 50 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 0.1 MM EDTA, 0.02 % SODIUM AZIDE, REMARK 210 1 X HALT, 100% D2O; 50 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 0.1 MM EDTA, 0.02 % SODIUM AZIDE, REMARK 210 1 X HALT, 21 MG/ML PF1 PHAGE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY; REMARK 210 3D 1H-15N NOESY; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNHAHB; REMARK 210 3D H(CCO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D (H)C(CO)NH; 3D REMARK 210 HN(CA)CO; 2D 1H-15N HSQC IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS; INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CS-NOE-RDC_ROSETTA, REMARK 210 NMRPIPE REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE ENTIRE PROTEIN SEQUENCE IN PROVIDED IN THE SEQRES SECTION OF REMARK 400 THE PDB FILE. HOWEVER, THE ENSEMBLES WERE CALCULATED AS SEPARATE REMARK 400 DOMAINS AND THE LINKER WAS OMITTED FROM THE CALCULATIONS. RESIDUES REMARK 400 229-344 ARE PRESENT IN THIS ENTRY AND RESIDUES 101-212 CAN BE FOUND REMARK 400 IN RELATED ENTRY 2LAF. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLY A 346 C GLY A 346 O -0.232 REMARK 500 2 GLY A 346 C GLY A 346 O -0.232 REMARK 500 3 GLY A 346 C GLY A 346 O -0.233 REMARK 500 4 GLY A 346 C GLY A 346 O -0.233 REMARK 500 5 GLY A 346 C GLY A 346 O -0.233 REMARK 500 6 GLY A 346 C GLY A 346 O -0.232 REMARK 500 7 GLY A 346 C GLY A 346 O -0.233 REMARK 500 8 GLY A 346 C GLY A 346 O -0.232 REMARK 500 9 GLY A 346 C GLY A 346 O -0.232 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 311 -64.96 87.63 REMARK 500 2 ASP A 311 -104.12 64.91 REMARK 500 3 ASP A 311 -64.98 87.55 REMARK 500 4 ALA A 293 -156.55 -115.71 REMARK 500 4 ASP A 311 -65.06 87.61 REMARK 500 5 ASP A 311 -102.23 64.93 REMARK 500 6 ASP A 311 -64.90 88.41 REMARK 500 6 THR A 325 150.99 -49.12 REMARK 500 7 LEU A 298 176.62 -53.71 REMARK 500 7 LEU A 310 77.45 -110.85 REMARK 500 7 ASP A 311 -108.54 61.70 REMARK 500 8 SER A 269 115.92 -162.09 REMARK 500 9 ASP A 311 -117.73 101.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17521 RELATED DB: BMRB REMARK 900 RELATED ID: 2LAF RELATED DB: PDB DBREF 2LAE A 101 344 UNP P0A903 NLPB_ECOLI 101 344 SEQADV 2LAE GLY A 98 UNP P0A903 EXPRESSION TAG SEQADV 2LAE ALA A 99 UNP P0A903 EXPRESSION TAG SEQADV 2LAE MET A 100 UNP P0A903 EXPRESSION TAG SEQADV 2LAE PRO A 345 UNP P0A903 EXPRESSION TAG SEQADV 2LAE GLY A 346 UNP P0A903 EXPRESSION TAG SEQRES 1 A 249 GLY ALA MET GLY ASP THR ALA SER LEU LEU VAL GLU ASN SEQRES 2 A 249 GLY ARG GLY ASN THR LEU TRP PRO GLN VAL VAL SER VAL SEQRES 3 A 249 LEU GLN ALA LYS ASN TYR THR ILE THR GLN ARG ASP ASP SEQRES 4 A 249 ALA GLY GLN THR LEU THR THR ASP TRP VAL GLN TRP ASN SEQRES 5 A 249 ARG LEU ASP GLU ASP GLU GLN TYR ARG GLY ARG TYR GLN SEQRES 6 A 249 ILE SER VAL LYS PRO GLN GLY TYR GLN GLN ALA VAL THR SEQRES 7 A 249 VAL LYS LEU LEU ASN LEU GLU GLN ALA GLY LYS PRO VAL SEQRES 8 A 249 ALA ASP ALA ALA SER MET GLN ARG TYR SER THR GLU MET SEQRES 9 A 249 MET ASN VAL ILE SER ALA GLY LEU ASP LYS SER ALA THR SEQRES 10 A 249 ASP ALA ALA ASN ALA ALA GLN ASN ARG ALA SER THR THR SEQRES 11 A 249 MET ASP VAL GLN SER ALA ALA ASP ASP THR GLY LEU PRO SEQRES 12 A 249 MET LEU VAL VAL ARG GLY PRO PHE ASN VAL VAL TRP GLN SEQRES 13 A 249 ARG LEU PRO ALA ALA LEU GLU LYS VAL GLY MET LYS VAL SEQRES 14 A 249 THR ASP SER THR ARG SER GLN GLY ASN MET ALA VAL THR SEQRES 15 A 249 TYR LYS PRO LEU SER ASP SER ASP TRP GLN GLU LEU GLY SEQRES 16 A 249 ALA SER ASP PRO GLY LEU ALA SER GLY ASP TYR LYS LEU SEQRES 17 A 249 GLN VAL GLY ASP LEU ASP ASN ARG SER SER LEU GLN PHE SEQRES 18 A 249 ILE ASP PRO LYS GLY HIS THR LEU THR GLN SER GLN ASN SEQRES 19 A 249 ASP ALA LEU VAL ALA VAL PHE GLN ALA ALA PHE SER LYS SEQRES 20 A 249 PRO GLY HELIX 1 1 PRO A 247 VAL A 262 1 16 HELIX 2 2 SER A 284 GLY A 292 1 9 HELIX 3 3 THR A 327 LYS A 344 1 18 SHEET 1 A 6 VAL A 230 ALA A 234 0 SHEET 2 A 6 PRO A 240 ARG A 245 -1 O MET A 241 N ALA A 233 SHEET 3 A 6 ARG A 313 ILE A 319 -1 O LEU A 316 N LEU A 242 SHEET 4 A 6 GLY A 301 ASP A 309 -1 N GLY A 308 O SER A 315 SHEET 5 A 6 ASN A 275 TYR A 280 -1 N MET A 276 O LEU A 305 SHEET 6 A 6 MET A 264 THR A 270 -1 N THR A 270 O ASN A 275 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1