HEADER TRANSCRIPTION 20-MAR-11 2LAS TITLE MOLECULAR DETERMINANTS OF PARALOGUE-SPECIFIC SUMO-SIM RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SUMO-1, GAP-MODIFYING PROTEIN 1, GMP1, SMT3 HOMOLOG 3, COMPND 5 SENTRIN, UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1, UBIQUITIN-LIKE COMPND 6 PROTEIN SMT3C, SMT3C, UBIQUITIN-LIKE PROTEIN UBL1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: M-IR2_PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OK/SW-CL.43, SMT3C, SMT3H3, SUMO1, UBL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET11; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS RANBP2, POST-TRANSLATIONAL MODIFICATION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.NAMANJA,Y.LI,Y.SU,S.WONG,J.LU,L.COLSON,C.WU,S.LI,Y.CHEN REVDAT 5 15-MAY-24 2LAS 1 REMARK REVDAT 4 14-JUN-23 2LAS 1 REMARK REVDAT 3 27-APR-16 2LAS 1 ATOM DBREF REMARK SEQRES REVDAT 2 15-FEB-12 2LAS 1 JRNL REVDAT 1 14-DEC-11 2LAS 0 JRNL AUTH A.T.NAMANJA,Y.J.LI,Y.SU,S.WONG,J.LU,L.T.COLSON,C.WU,S.S.LI, JRNL AUTH 2 Y.CHEN JRNL TITL INSIGHTS INTO HIGH AFFINITY SMALL UBIQUITIN-LIKE MODIFIER JRNL TITL 2 (SUMO) RECOGNITION BY SUMO-INTERACTING MOTIFS (SIMS) JRNL TITL 3 REVEALED BY A COMBINATION OF NMR AND PEPTIDE ARRAY ANALYSIS. JRNL REF J.BIOL.CHEM. V. 287 3231 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22147707 JRNL DOI 10.1074/JBC.M111.293118 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS, HADDOCK REMARK 3 AUTHORS : BRUKER (TOPSPIN), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS), BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102168. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N; U-2H] REMARK 210 SUMO1, 1.0 MM M-IR2 PEPTIDE, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-15N]; REMARK 210 PERDEUTERATED SUMO1, 0.6 MM M- REMARK 210 IR2 PEPTIDE, 90% H2O/10% D2O; REMARK 210 0.6 MM [U-15N; U-2H] SUMO1, 0.4 REMARK 210 MM M-IR2 PEPTIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HN(COCA)CB; REMARK 210 3D HNCACB; 3D HN(CO)CA; 3D 15N- REMARK 210 EDITED NOESYHSQC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C HSQC-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, SPARKY 3.113, REMARK 210 HADDOCK 2.0, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 ASP A 15 REMARK 465 LYS A 16 REMARK 465 LYS A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 19 REMARK 465 HIS A 98 REMARK 465 SER A 99 REMARK 465 THR A 100 REMARK 465 VAL A 101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 76 H GLU A 79 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 30 27.83 -166.31 REMARK 500 1 MET A 59 -34.00 -39.51 REMARK 500 1 SER A 61 -41.95 -20.70 REMARK 500 1 ARG A 63 133.52 -171.39 REMARK 500 1 THR A 76 145.81 -178.61 REMARK 500 1 PRO A 77 -12.92 -46.09 REMARK 500 1 GLU A 83 -152.77 -73.48 REMARK 500 1 GLU A 85 -0.74 67.26 REMARK 500 1 ASP A 86 174.39 -49.57 REMARK 500 1 GLU B2707 -73.35 -84.59 REMARK 500 2 ASP A 30 27.86 -166.37 REMARK 500 2 MET A 59 -34.11 -39.53 REMARK 500 2 SER A 61 -42.05 -20.61 REMARK 500 2 ARG A 63 133.47 -171.38 REMARK 500 2 THR A 76 145.77 -178.62 REMARK 500 2 PRO A 77 -12.95 -46.02 REMARK 500 2 GLU A 83 -152.86 -73.41 REMARK 500 2 GLU A 85 -0.76 67.23 REMARK 500 2 ASP A 86 174.31 -49.64 REMARK 500 2 VAL B2713 113.85 -164.93 REMARK 500 3 ASP A 30 27.94 -166.41 REMARK 500 3 MET A 59 -34.02 -39.63 REMARK 500 3 SER A 61 -41.95 -20.74 REMARK 500 3 ARG A 63 133.55 -171.25 REMARK 500 3 THR A 76 145.83 -178.53 REMARK 500 3 PRO A 77 -13.01 -46.00 REMARK 500 3 GLU A 83 -152.78 -73.49 REMARK 500 3 GLU A 85 -0.69 67.25 REMARK 500 3 ASP A 86 174.26 -49.57 REMARK 500 3 VAL B2713 113.14 -161.28 REMARK 500 4 ASP A 30 27.81 -166.33 REMARK 500 4 MET A 59 -34.03 -39.52 REMARK 500 4 SER A 61 -41.91 -20.70 REMARK 500 4 ARG A 63 133.57 -171.32 REMARK 500 4 THR A 76 145.75 -178.65 REMARK 500 4 PRO A 77 -12.95 -45.99 REMARK 500 4 GLU A 83 -152.82 -73.48 REMARK 500 4 GLU A 85 -0.81 67.26 REMARK 500 4 ASP A 86 174.31 -49.61 REMARK 500 5 ASP A 30 27.88 -166.37 REMARK 500 5 MET A 59 -33.94 -39.66 REMARK 500 5 SER A 61 -41.89 -20.80 REMARK 500 5 ARG A 63 133.56 -171.31 REMARK 500 5 GLU A 67 29.90 48.77 REMARK 500 5 THR A 76 145.87 -178.56 REMARK 500 5 PRO A 77 -12.97 -46.13 REMARK 500 5 GLU A 83 -152.82 -73.44 REMARK 500 5 GLU A 85 -0.69 67.22 REMARK 500 5 ASP A 86 174.34 -49.72 REMARK 500 5 VAL B2713 113.16 -163.22 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASQ RELATED DB: PDB REMARK 900 SUMO-SIM COMPLEX REMARK 900 RELATED ID: 17536 RELATED DB: BMRB DBREF 2LAS A 1 101 UNP P63165 SUMO1_HUMAN 1 101 DBREF 2LAS B 2705 2717 PDB 2LAS 2LAS 2705 2717 SEQRES 1 A 101 MET SER ASP GLN GLU ALA LYS PRO SER THR GLU ASP LEU SEQRES 2 A 101 GLY ASP LYS LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL SEQRES 3 A 101 ILE GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS SEQRES 4 A 101 MET THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR CYS SEQRES 5 A 101 GLN ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU SEQRES 6 A 101 PHE GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS SEQRES 7 A 101 GLU LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR SEQRES 8 A 101 GLN GLU GLN THR GLY GLY HIS SER THR VAL SEQRES 1 B 13 ASP ASN GLU ILE GLU VAL ILE ILE VAL TRP GLU LYS LYS HELIX 1 1 LEU A 44 ARG A 54 1 11 HELIX 2 2 THR A 76 GLY A 81 1 6 SHEET 1 A 6 GLN A 69 ARG A 70 0 SHEET 2 A 6 PHE A 64 PHE A 66 -1 N PHE A 66 O GLN A 69 SHEET 3 A 6 VAL A 87 VAL A 90 -1 O GLU A 89 N LEU A 65 SHEET 4 A 6 TYR A 21 ILE A 27 1 N LYS A 25 O ILE A 88 SHEET 5 A 6 GLU A 33 LYS A 39 -1 O PHE A 36 N LEU A 24 SHEET 6 A 6 VAL B2710 ILE B2712 -1 O ILE B2711 N LYS A 37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1