HEADER TRANSFERASE 23-MAR-11 2LB9 TITLE REFINED SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF DOMAIN TITLE 2 IN THE RED LIGHT-ABSORBING GROUND STATE (CORRECTED PYRROLE RING TITLE 3 PLANARITY) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR HISTIDINE KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS SP. JA-2-3B'A(2-13); SOURCE 3 ORGANISM_TAXID: 321332; SOURCE 4 STRAIN: JA-2-3B'A(2-13); SOURCE 5 GENE: CYB_2465; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-4T KEYWDS PCB, KINASE, TRANSFERASE, GAF DOMAIN, PHOSPHOPROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.C.CORNILESCU,G.CORNILESCU,A.T.ULIJASZ,R.D.VIERSTRA,J.L.MARKLEY REVDAT 3 14-JUN-23 2LB9 1 REMARK SEQADV LINK REVDAT 2 01-JAN-14 2LB9 1 JRNL VERSN REVDAT 1 29-JUN-11 2LB9 0 JRNL AUTH G.CORNILESCU,A.T.ULIJASZ,C.C.CORNILESCU,J.L.MARKLEY, JRNL AUTH 2 R.D.VIERSTRA JRNL TITL SOLUTION STRUCTURE OF A CYANOBACTERIAL PHYTOCHROME GAF JRNL TITL 2 DOMAIN IN THE RED-LIGHT-ABSORBING GROUND STATE. JRNL REF J.MOL.BIOL. V. 383 403 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18762196 JRNL DOI 10.1016/J.JMB.2008.08.034 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102185. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-13C; U-15N] PROTEIN, REMARK 210 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH REMARK 210 METHOD USED : MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 TRP A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 ASP A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 ILE A 18 REMARK 465 ASN A 19 REMARK 465 ARG A 20 REMARK 465 ILE A 21 REMARK 465 THR A 22 REMARK 465 HIS A 23 REMARK 465 GLN A 24 REMARK 465 ILE A 25 REMARK 465 ARG A 26 REMARK 465 GLN A 27 REMARK 465 SER A 28 REMARK 465 LEU A 29 REMARK 465 GLU A 30 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 182 H LEU A 186 1.49 REMARK 500 O TYR A 54 H LEU A 165 1.50 REMARK 500 O SER A 177 H LEU A 181 1.58 REMARK 500 O HIS A 141 H SER A 145 1.59 REMARK 500 O ARG A 43 N GLY A 47 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 72 18.15 42.43 REMARK 500 1 PRO A 75 166.88 -49.76 REMARK 500 1 PRO A 88 -87.48 -34.51 REMARK 500 1 GLU A 89 -36.97 -171.40 REMARK 500 1 VAL A 106 -14.72 -48.97 REMARK 500 1 GLN A 109 68.78 39.49 REMARK 500 1 SER A 118 -113.02 42.71 REMARK 500 1 TRP A 119 96.14 43.83 REMARK 500 1 ASP A 136 154.78 -38.34 REMARK 500 1 HIS A 159 -113.63 76.30 REMARK 500 1 ALA A 171 35.85 -83.46 REMARK 500 1 GLU A 172 149.87 -173.29 REMARK 500 1 ARG A 174 93.28 -167.46 REMARK 500 2 GLU A 72 22.36 40.18 REMARK 500 2 PRO A 88 -96.30 -35.44 REMARK 500 2 GLU A 89 -42.18 -167.91 REMARK 500 2 GLN A 115 68.26 -174.88 REMARK 500 2 SER A 118 -87.52 169.25 REMARK 500 2 SER A 122 -19.26 74.44 REMARK 500 2 ARG A 124 -140.16 37.72 REMARK 500 2 LEU A 127 -163.02 39.63 REMARK 500 2 PRO A 137 -12.20 -44.27 REMARK 500 2 HIS A 159 -104.77 63.12 REMARK 500 2 ALA A 171 35.94 -86.51 REMARK 500 2 ARG A 174 130.92 -172.71 REMARK 500 3 GLU A 72 22.04 40.65 REMARK 500 3 PRO A 88 -131.44 -47.12 REMARK 500 3 GLU A 89 -53.67 -145.55 REMARK 500 3 ARG A 101 129.43 -172.44 REMARK 500 3 SER A 122 -152.62 -139.34 REMARK 500 3 ARG A 124 -33.54 68.10 REMARK 500 3 LEU A 127 132.80 -177.43 REMARK 500 3 PRO A 130 160.97 -46.40 REMARK 500 3 ASP A 136 140.39 -36.91 REMARK 500 3 HIS A 159 -99.58 59.87 REMARK 500 4 GLU A 72 21.26 40.48 REMARK 500 4 GLU A 89 -16.16 -48.91 REMARK 500 4 ARG A 101 130.11 -177.68 REMARK 500 4 GLN A 115 72.97 -160.29 REMARK 500 4 PRO A 116 108.02 -47.25 REMARK 500 4 GLU A 117 -72.78 -171.21 REMARK 500 4 SER A 122 -67.34 170.05 REMARK 500 4 ARG A 124 -153.07 56.24 REMARK 500 4 LEU A 127 -113.54 23.16 REMARK 500 4 PRO A 137 -18.11 -41.54 REMARK 500 4 HIS A 159 -115.17 77.18 REMARK 500 4 PRO A 173 -71.52 -50.15 REMARK 500 4 ARG A 174 103.10 50.66 REMARK 500 5 GLU A 72 20.29 41.34 REMARK 500 5 PRO A 88 -113.78 -41.41 REMARK 500 REMARK 500 THIS ENTRY HAS 258 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15717 RELATED DB: BMRB REMARK 900 RELATED ID: 2LB5 RELATED DB: PDB DBREF 2LB9 A 1 200 UNP Q2JIZ5 Q2JIZ5_SYNJB 1 200 SEQADV 2LB9 SER A 201 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB9 LEU A 202 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB9 HIS A 203 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB9 HIS A 204 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB9 HIS A 205 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB9 HIS A 206 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB9 HIS A 207 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2LB9 HIS A 208 UNP Q2JIZ5 EXPRESSION TAG SEQRES 1 A 208 MET ASP THR GLU THR TRP ALA ALA ALA ALA ARG PRO SER SEQRES 2 A 208 ARG ASP ALA LEU ILE ASN ARG ILE THR HIS GLN ILE ARG SEQRES 3 A 208 GLN SER LEU GLU LEU ASP GLN ILE LEU ARG ALA THR VAL SEQRES 4 A 208 GLU GLU VAL ARG ALA PHE LEU GLY THR ASP ARG VAL LYS SEQRES 5 A 208 VAL TYR ARG PHE ASP PRO GLU GLY HIS GLY THR VAL VAL SEQRES 6 A 208 ALA GLU ALA ARG GLY GLY GLU ARG LEU PRO SER LEU LEU SEQRES 7 A 208 GLY LEU THR PHE PRO ALA GLY ASP ILE PRO GLU GLU ALA SEQRES 8 A 208 ARG ARG LEU PHE ARG LEU ALA GLN VAL ARG VAL ILE VAL SEQRES 9 A 208 ASP VAL GLU ALA GLN SER ARG SER ILE SER GLN PRO GLU SEQRES 10 A 208 SER TRP GLY LEU SER ALA ARG VAL PRO LEU GLY GLU PRO SEQRES 11 A 208 LEU GLN ARG PRO VAL ASP PRO CYS HIS VAL HIS TYR LEU SEQRES 12 A 208 LYS SER MET GLY VAL ALA SER SER LEU VAL VAL PRO LEU SEQRES 13 A 208 MET HIS HIS GLN GLU LEU TRP GLY LEU LEU VAL SER HIS SEQRES 14 A 208 HIS ALA GLU PRO ARG PRO TYR SER GLN GLU GLU LEU GLN SEQRES 15 A 208 VAL VAL GLN LEU LEU ALA ASP GLN VAL SER ILE ALA ILE SEQRES 16 A 208 ALA GLN ALA GLU LEU SER LEU HIS HIS HIS HIS HIS HIS HET CYC A 301 81 HETNAM CYC PHYCOCYANOBILIN FORMUL 2 CYC C33 H40 N4 O6 HELIX 1 1 LEU A 31 GLY A 47 1 17 HELIX 2 2 PRO A 83 ILE A 87 5 5 HELIX 3 3 GLU A 89 ALA A 98 1 10 HELIX 4 4 ASP A 105 GLN A 109 5 5 HELIX 5 5 ASP A 136 SER A 145 1 10 HELIX 6 6 SER A 177 LEU A 202 1 26 SHEET 1 A 6 THR A 81 PHE A 82 0 SHEET 2 A 6 GLY A 62 ARG A 69 -1 N GLY A 62 O PHE A 82 SHEET 3 A 6 ARG A 50 PHE A 56 -1 N ARG A 55 O THR A 63 SHEET 4 A 6 GLU A 161 HIS A 170 -1 O LEU A 165 N TYR A 54 SHEET 5 A 6 SER A 150 HIS A 158 -1 N LEU A 152 O SER A 168 SHEET 6 A 6 ARG A 101 VAL A 102 -1 N ARG A 101 O VAL A 153 LINK SG CYS A 138 CAC CYC A 301 1555 1555 1.84 SITE 1 AC1 12 LYS A 52 GLY A 85 ASP A 86 ALA A 91 SITE 2 AC1 12 PHE A 95 ARG A 101 SER A 112 VAL A 135 SITE 3 AC1 12 CYS A 138 HIS A 139 VAL A 167 HIS A 169 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1