HEADER RNA BINDING PROTEIN 07-APR-11 2LBX TITLE SOLUTION STRUCTURE OF THE S. CEREVISIAE H/ACA RNP PROTEIN NHP2P COMPND MOL_ID: 1; COMPND 2 MOLECULE: H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 36-156; COMPND 5 SYNONYM: H/ACA SNORNP PROTEIN NHP2, HIGH MOBILITY GROUP-LIKE NUCLEAR COMPND 6 PROTEIN 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NHP2, YDL208W, D1045; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET24A KEYWDS L7AE, SNORNP, SCARNP, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.KOO,C.PARK,C.F.FERNANDEZ,N.CHIM,Y.DING,G.CHANFREAU,J.FEIGON REVDAT 3 14-JUN-23 2LBX 1 REMARK REVDAT 2 31-AUG-11 2LBX 1 JRNL VERSN REVDAT 1 06-JUL-11 2LBX 0 JRNL AUTH B.K.KOO,C.J.PARK,C.F.FERNANDEZ,N.CHIM,Y.DING,G.CHANFREAU, JRNL AUTH 2 J.FEIGON JRNL TITL STRUCTURE OF H/ACA RNP PROTEIN NHP2P REVEALS CIS/TRANS JRNL TITL 2 ISOMERIZATION OF A CONSERVED PROLINE AT THE RNA AND NOP10 JRNL TITL 3 BINDING INTERFACE. JRNL REF J.MOL.BIOL. V. 411 927 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21708174 JRNL DOI 10.1016/J.JMB.2011.06.022 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000102207. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM [U-13C; U-15N] HEPES, 200 REMARK 210 MM [U-13C; U-15N] POTASSIUM REMARK 210 CHLORIDE, 1 MM [U-13C; U-15N] REMARK 210 DTT, 100% D2O; 20 MM [U-15N] REMARK 210 HEPES, 200 MM [U-15N] POTASSIUM REMARK 210 CHLORIDE, 1 MM [U-15N] DTT, 90% REMARK 210 H2O/10% D2O; 20 MM [U-13C; U-15N] REMARK 210 HEPES, 200 MM [U-13C; U-15N] REMARK 210 POTASSIUM CHLORIDE, 1 MM [U-13C; REMARK 210 U-15N] DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY; 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC; 3D C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, TOPSPIN, PROCHECKNMR, REMARK 210 TALOS, XWINNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 82 85.34 -157.40 REMARK 500 1 PRO A 83 -177.84 -69.76 REMARK 500 1 SER A 98 61.22 73.29 REMARK 500 1 PRO A 100 88.89 -69.80 REMARK 500 1 PRO A 105 76.89 -69.69 REMARK 500 1 SER A 106 101.52 -166.77 REMARK 500 1 ALA A 115 104.36 -177.96 REMARK 500 1 PRO A 127 78.90 -69.76 REMARK 500 1 GLU A 140 -77.00 -57.43 REMARK 500 2 PRO A 83 -176.08 -69.75 REMARK 500 2 SER A 98 97.23 72.90 REMARK 500 2 PRO A 100 88.42 -69.79 REMARK 500 2 PRO A 105 76.73 -69.79 REMARK 500 2 SER A 106 102.28 -163.40 REMARK 500 2 ALA A 115 107.08 -171.45 REMARK 500 2 LYS A 136 92.46 -64.67 REMARK 500 2 GLU A 140 -76.11 -57.73 REMARK 500 3 PRO A 83 -176.86 -69.69 REMARK 500 3 SER A 98 98.84 71.95 REMARK 500 3 PRO A 100 88.83 -69.76 REMARK 500 3 PRO A 105 76.81 -69.75 REMARK 500 3 SER A 106 102.07 -168.64 REMARK 500 3 ALA A 115 105.33 -168.65 REMARK 500 3 SER A 121 -38.76 -168.09 REMARK 500 3 SER A 129 -169.69 -112.63 REMARK 500 3 GLU A 140 -75.03 -55.88 REMARK 500 3 TYR A 142 -70.91 -56.44 REMARK 500 4 SER A 82 92.30 -164.16 REMARK 500 4 SER A 98 62.26 73.69 REMARK 500 4 PRO A 100 89.49 -69.74 REMARK 500 4 PRO A 105 72.29 -69.73 REMARK 500 4 ALA A 115 118.13 178.75 REMARK 500 4 ARG A 118 81.12 -180.00 REMARK 500 4 LYS A 136 -170.30 -60.29 REMARK 500 4 GLU A 140 -75.18 -55.39 REMARK 500 4 TYR A 142 -71.96 -59.69 REMARK 500 5 SER A 82 147.94 -170.61 REMARK 500 5 SER A 98 82.00 71.57 REMARK 500 5 PRO A 100 87.98 -69.72 REMARK 500 5 PRO A 105 77.67 -69.78 REMARK 500 5 SER A 106 105.15 -164.91 REMARK 500 5 ALA A 115 115.33 177.24 REMARK 500 5 ARG A 118 76.67 -155.36 REMARK 500 5 SER A 129 -174.41 -174.50 REMARK 500 5 ASN A 137 -42.00 -148.72 REMARK 500 5 LYS A 138 -51.03 -145.91 REMARK 500 5 GLU A 140 -79.33 -56.77 REMARK 500 6 SER A 82 148.59 -171.15 REMARK 500 6 PRO A 83 -177.37 -69.78 REMARK 500 6 SER A 98 69.18 72.29 REMARK 500 REMARK 500 THIS ENTRY HAS 190 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17579 RELATED DB: BMRB REMARK 900 RELATED ID: 2LBW RELATED DB: PDB DBREF 2LBX A 36 156 UNP P32495 NHP2_YEAST 36 156 SEQRES 1 A 121 SER LYS LYS LEU ASN LYS LYS VAL LEU LYS THR VAL LYS SEQRES 2 A 121 LYS ALA SER LYS ALA LYS ASN VAL LYS ARG GLY VAL LYS SEQRES 3 A 121 GLU VAL VAL LYS ALA LEU ARG LYS GLY GLU LYS GLY LEU SEQRES 4 A 121 VAL VAL ILE ALA GLY ASP ILE SER PRO ALA ASP VAL ILE SEQRES 5 A 121 SER HIS ILE PRO VAL LEU CYS GLU ASP HIS SER VAL PRO SEQRES 6 A 121 TYR ILE PHE ILE PRO SER LYS GLN ASP LEU GLY ALA ALA SEQRES 7 A 121 GLY ALA THR LYS ARG PRO THR SER VAL VAL PHE ILE VAL SEQRES 8 A 121 PRO GLY SER ASN LYS LYS LYS ASP GLY LYS ASN LYS GLU SEQRES 9 A 121 GLU GLU TYR LYS GLU SER PHE ASN GLU VAL VAL LYS GLU SEQRES 10 A 121 VAL GLN ALA LEU HELIX 1 1 SER A 36 ALA A 53 1 18 HELIX 2 2 GLY A 59 LYS A 69 1 11 HELIX 3 3 PRO A 83 HIS A 97 1 15 HELIX 4 4 SER A 106 ALA A 115 1 10 HELIX 5 5 LYS A 131 GLY A 135 5 5 HELIX 6 6 LYS A 138 LEU A 156 1 19 SHEET 1 A 4 VAL A 56 ARG A 58 0 SHEET 2 A 4 VAL A 122 ILE A 125 -1 O PHE A 124 N LYS A 57 SHEET 3 A 4 LEU A 74 ALA A 78 -1 N LEU A 74 O ILE A 125 SHEET 4 A 4 TYR A 101 ILE A 104 1 O ILE A 104 N ILE A 77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1