HEADER TRANSCRIPTION 28-APR-11 2LCD OBSLTE 15-JAN-14 2LCD 2MAM TITLE SOLUTION STRUCTURE OF RBBP1 TUDOR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 4-121; COMPND 5 SYNONYM: ARID DOMAIN-CONTAINING PROTEIN 4A, RETINOBLASTOMA-BINDING COMPND 6 PROTEIN 1, RBBP-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARID4A, RBBP1, RBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGBO EXPRESSION VECTOR KEYWDS TUDOR DOMAIN, RBBP1, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.GONG,Y.FENG REVDAT 2 15-JAN-14 2LCD 1 OBSLTE REVDAT 1 16-MAY-12 2LCD 0 JRNL AUTH W.GONG,Y.FENG JRNL TITL SOLUTION STRUCTURE OF RBBP1 TUDOR DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CNS 1.2 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-11. REMARK 100 THE RCSB ID CODE IS RCSB102223. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-95% 15N] ENTITY-1, 50 REMARK 210 MM TRIS-2, 5 MM DTT-3, 50 MM REMARK 210 SODIUM CHLORIDE-4, 90% H2O/10% REMARK 210 D2O; 0.6 MM [U-95% 13C; U-95% REMARK 210 15N] ENTITY-5, 50 MM TRIS-6, 5 MM REMARK 210 DTT-7, 50 MM SODIUM CHLORIDE-8, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HNCO; REMARK 210 3D HCACO; 3D 1H-15N TOCSY; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D 1H REMARK 210 -13C NOESY AROMATIC; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, NMRVIEW REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 5 -75.87 -119.42 REMARK 500 1 ARG A 31 77.12 -63.44 REMARK 500 1 ALA A 83 -78.54 -113.68 REMARK 500 1 SER A 84 150.99 60.57 REMARK 500 1 TRP A 85 118.46 -165.54 REMARK 500 1 LYS A 106 36.45 -150.61 REMARK 500 1 HIS A 110 113.92 -176.97 REMARK 500 1 PHE A 111 69.35 -108.37 REMARK 500 1 SER A 114 -65.17 -138.41 REMARK 500 1 THR A 116 174.26 55.40 REMARK 500 1 LEU A 117 31.39 -142.35 REMARK 500 2 GLU A 3 105.20 -53.67 REMARK 500 2 ALA A 5 -76.36 -119.42 REMARK 500 2 TYR A 6 -49.10 77.28 REMARK 500 2 LEU A 7 142.67 179.62 REMARK 500 2 THR A 8 -30.15 -158.69 REMARK 500 2 ARG A 31 91.61 -62.22 REMARK 500 2 LYS A 79 130.25 -173.25 REMARK 500 2 ALA A 83 -76.93 -120.29 REMARK 500 2 SER A 84 150.11 65.21 REMARK 500 2 LYS A 106 -76.03 65.79 REMARK 500 2 GLU A 108 -172.51 56.16 REMARK 500 2 ARG A 109 -52.59 -156.45 REMARK 500 2 ALA A 112 33.72 -168.72 REMARK 500 2 GLU A 113 43.45 -96.12 REMARK 500 2 THR A 116 109.33 60.48 REMARK 500 3 ASP A 2 -46.23 -134.19 REMARK 500 3 PRO A 4 -77.75 -60.11 REMARK 500 3 THR A 8 -42.12 -156.42 REMARK 500 3 SER A 71 -168.36 -76.86 REMARK 500 3 LYS A 79 131.04 -176.89 REMARK 500 3 ALA A 83 99.08 -163.13 REMARK 500 3 LEU A 105 -67.72 69.15 REMARK 500 3 GLU A 108 38.72 -172.87 REMARK 500 3 ARG A 109 42.02 -156.45 REMARK 500 3 THR A 116 86.02 60.87 REMARK 500 4 ALA A 5 -75.88 -119.35 REMARK 500 4 LEU A 7 -159.87 -136.90 REMARK 500 4 PRO A 56 167.34 -49.42 REMARK 500 4 ALA A 83 -86.69 -112.81 REMARK 500 4 SER A 84 115.68 56.91 REMARK 500 4 LEU A 105 -179.05 -67.38 REMARK 500 4 PHE A 111 -61.37 -155.82 REMARK 500 4 ALA A 112 177.43 57.76 REMARK 500 4 GLU A 113 100.52 -167.83 REMARK 500 4 SER A 114 72.84 -160.35 REMARK 500 4 LEU A 117 104.33 57.50 REMARK 500 5 PRO A 4 -93.62 -66.04 REMARK 500 5 ALA A 5 -76.20 -119.76 REMARK 500 5 LEU A 7 -159.65 -75.29 REMARK 500 REMARK 500 THIS ENTRY HAS 233 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LCC RELATED DB: PDB REMARK 900 RELATED ID: 17607 RELATED DB: BMRB DBREF 2LCD A 1 118 UNP P29374 ARI4A_HUMAN 4 121 SEQRES 1 A 118 ALA ASP GLU PRO ALA TYR LEU THR VAL GLY THR ASP VAL SEQRES 2 A 118 SER ALA LYS TYR ARG GLY ALA PHE CYS GLU ALA LYS ILE SEQRES 3 A 118 LYS THR VAL LYS ARG LEU VAL LYS VAL LYS VAL LEU LEU SEQRES 4 A 118 LYS GLN ASP ASN THR THR GLN LEU VAL GLN ASP ASP GLN SEQRES 5 A 118 VAL LYS GLY PRO LEU ARG VAL GLY ALA ILE VAL GLU THR SEQRES 6 A 118 ARG THR SER ASP GLY SER PHE GLN GLU ALA ILE ILE SER SEQRES 7 A 118 LYS LEU THR ASP ALA SER TRP TYR THR VAL VAL PHE ASP SEQRES 8 A 118 ASP GLY ASP GLU ARG THR LEU ARG ARG THR SER LEU CYS SEQRES 9 A 118 LEU LYS GLY GLU ARG HIS PHE ALA GLU SER GLU THR LEU SEQRES 10 A 118 ASP HELIX 1 1 ARG A 99 GLY A 107 5 9 SHEET 1 A 4 ASP A 12 TYR A 17 0 SHEET 2 A 4 ALA A 20 VAL A 29 -1 O ALA A 20 N TYR A 17 SHEET 3 A 4 TYR A 86 VAL A 89 -1 O THR A 87 N LYS A 27 SHEET 4 A 4 GLU A 95 LEU A 98 -1 O LEU A 98 N TYR A 86 SHEET 1 B 4 THR A 45 GLN A 49 0 SHEET 2 B 4 VAL A 33 LEU A 39 -1 N VAL A 37 O GLN A 46 SHEET 3 B 4 PHE A 72 ASP A 82 -1 O LYS A 79 N LYS A 36 SHEET 4 B 4 ILE A 62 ARG A 66 -1 N VAL A 63 O ALA A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1