HEADER TRANSCRIPTION REGULATOR 28-APR-11 2LCE TITLE CHEMICAL SHIFT ASSIGNMENT OF HR4436B FROM HOMO SAPIENS, NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2H2-TYPE ZINC FINGERS 2 AND 3; COMPND 5 SYNONYM: BCL-6, B-CELL LYMPHOMA 5 PROTEIN, BCL-5, PROTEIN LAZ-3, ZINC COMPND 6 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27, ZINC FINGER PROTEIN 51; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.LEE,R.SHASTRY,C.CICCOSANTI,H.JANJUA,T.B.ACTON,R.XIAO,J.K.EVERETT, AUTHOR 2 G.T.MONTELIONE,J.H.PRESTEGARD,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2LCE 1 REMARK SEQADV LINK REVDAT 2 22-FEB-12 2LCE 1 VERSN KEYWDS REVDAT 1 18-MAY-11 2LCE 0 JRNL AUTH H.LEE,G.T.MONTELIONE,J.H.PRESTEGARD JRNL TITL SOLUTION STRUCTURE OF HR4436B. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, X-PLOR NIH 2.18 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000102224. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 HR4436B, 2 % SODIUM AZIDE, 10 MM REMARK 210 DTT, 50 UM ZNSO4, 50 UM DSS, 100 REMARK 210 MM SODIUM CHLORIDE, 20 MM MES, REMARK 210 95% H2O/5% D2O; 0.65 MM [U-100% REMARK 210 15N] HR4436B, 2 % SODIUM AZIDE, REMARK 210 10 MM DTT, 50 UM ZNSO4, 50 UM REMARK 210 DSS, 100 MM SODIUM CHLORIDE, 20 REMARK 210 MM MES, 4.2 % C12E5 PEG/HEXANOL, REMARK 210 95% H2O/5% D2O; 0.8 MM [U-100% REMARK 210 13C; U-100% 15N] HR4436B, 2 % REMARK 210 SODIUM AZIDE, 10 MM DTT, 50 UM REMARK 210 ZNSO4, 50 UM DSS, 100 MM SODIUM REMARK 210 CHLORIDE, 20 MM MES, 5 % REMARK 210 POSITIVELY CHARGED STRETCH REMARK 210 POLYACRYLAMIDE GEL, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D NH J-MODULATION REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, PSVS, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 14 106.01 -168.39 REMARK 500 1 ASP A 15 20.70 -148.05 REMARK 500 1 ASP A 21 49.03 -76.76 REMARK 500 1 ARG A 22 -32.39 -142.22 REMARK 500 1 THR A 41 78.07 50.64 REMARK 500 1 GLU A 43 42.40 -75.95 REMARK 500 1 SER A 69 90.49 -57.13 REMARK 500 1 GLU A 71 1.07 -167.74 REMARK 500 1 LYS A 72 72.80 -165.98 REMARK 500 2 ASP A 15 36.85 -81.59 REMARK 500 2 ALA A 25 157.11 -45.18 REMARK 500 2 LYS A 44 71.92 56.22 REMARK 500 2 CYS A 51 -66.44 -103.34 REMARK 500 3 ALA A 25 172.80 -46.10 REMARK 500 3 LYS A 44 62.48 -167.23 REMARK 500 3 PRO A 45 84.87 -38.42 REMARK 500 3 CYS A 51 -72.13 -102.86 REMARK 500 3 LYS A 72 73.15 53.61 REMARK 500 4 CYS A 23 -164.95 -115.84 REMARK 500 4 ALA A 25 175.00 -52.88 REMARK 500 4 LYS A 44 51.06 -169.97 REMARK 500 4 PRO A 45 -157.31 -65.50 REMARK 500 4 ALA A 53 -177.40 -51.62 REMARK 500 5 HIS A 13 -127.90 -153.55 REMARK 500 5 SER A 14 153.75 57.21 REMARK 500 5 ASP A 15 35.68 -76.32 REMARK 500 5 CYS A 23 -141.63 -108.81 REMARK 500 5 ALA A 25 98.10 -46.51 REMARK 500 5 GLU A 43 107.39 53.57 REMARK 500 5 LYS A 44 71.73 -159.14 REMARK 500 5 CYS A 51 -70.53 -113.83 REMARK 500 5 GLU A 71 159.50 59.32 REMARK 500 6 PRO A 45 -97.52 -75.86 REMARK 500 6 CYS A 51 -61.86 -123.17 REMARK 500 6 HIS A 68 24.85 -66.75 REMARK 500 6 LYS A 72 54.54 -169.96 REMARK 500 7 HIS A 13 85.39 48.25 REMARK 500 7 SER A 14 14.34 -165.09 REMARK 500 7 GLU A 43 4.23 -162.44 REMARK 500 7 LYS A 44 62.34 60.21 REMARK 500 7 PRO A 45 -97.56 -75.44 REMARK 500 7 ALA A 53 173.45 -54.22 REMARK 500 7 THR A 65 -18.14 -48.57 REMARK 500 7 LYS A 72 50.99 -169.42 REMARK 500 8 THR A 12 -76.77 59.57 REMARK 500 8 THR A 41 114.49 57.22 REMARK 500 8 PRO A 45 -92.84 -68.66 REMARK 500 8 CYS A 51 -70.54 -115.76 REMARK 500 8 LYS A 72 73.77 -162.51 REMARK 500 9 SER A 14 37.93 -154.21 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 CYS A 23 SG 111.4 REMARK 620 3 HIS A 36 NE2 108.3 102.7 REMARK 620 4 HIS A 40 NE2 114.2 114.8 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 48 SG REMARK 620 2 CYS A 51 SG 109.7 REMARK 620 3 HIS A 64 NE2 111.2 114.7 REMARK 620 4 HIS A 68 NE2 112.8 111.9 96.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17609 RELATED DB: BMRB REMARK 900 RELATED ID: HR4436B RELATED DB: TARGETDB DBREF 2LCE A 12 74 UNP P41182 BCL6_HUMAN 540 602 SEQADV 2LCE MET A 1 UNP P41182 EXPRESSION TAG SEQADV 2LCE GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 2LCE HIS A 3 UNP P41182 EXPRESSION TAG SEQADV 2LCE HIS A 4 UNP P41182 EXPRESSION TAG SEQADV 2LCE HIS A 5 UNP P41182 EXPRESSION TAG SEQADV 2LCE HIS A 6 UNP P41182 EXPRESSION TAG SEQADV 2LCE HIS A 7 UNP P41182 EXPRESSION TAG SEQADV 2LCE HIS A 8 UNP P41182 EXPRESSION TAG SEQADV 2LCE SER A 9 UNP P41182 EXPRESSION TAG SEQADV 2LCE HIS A 10 UNP P41182 EXPRESSION TAG SEQADV 2LCE MET A 11 UNP P41182 EXPRESSION TAG SEQRES 1 A 74 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET THR HIS SEQRES 2 A 74 SER ASP LYS PRO TYR LYS CYS ASP ARG CYS GLN ALA SER SEQRES 3 A 74 PHE ARG TYR LYS GLY ASN LEU ALA SER HIS LYS THR VAL SEQRES 4 A 74 HIS THR GLY GLU LYS PRO TYR ARG CYS ASN ILE CYS GLY SEQRES 5 A 74 ALA GLN PHE ASN ARG PRO ALA ASN LEU LYS THR HIS THR SEQRES 6 A 74 ARG ILE HIS SER GLY GLU LYS PRO TYR HET ZN A 200 1 HET ZN A 300 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 TYR A 29 THR A 41 1 13 HELIX 2 2 ARG A 57 SER A 69 1 13 SHEET 1 A 2 TYR A 46 ARG A 47 0 SHEET 2 A 2 GLN A 54 PHE A 55 -1 O PHE A 55 N TYR A 46 LINK SG CYS A 20 ZN ZN A 200 1555 1555 2.36 LINK SG CYS A 23 ZN ZN A 200 1555 1555 2.36 LINK NE2 HIS A 36 ZN ZN A 200 1555 1555 2.16 LINK NE2 HIS A 40 ZN ZN A 200 1555 1555 2.15 LINK SG CYS A 48 ZN ZN A 300 1555 1555 2.36 LINK SG CYS A 51 ZN ZN A 300 1555 1555 2.36 LINK NE2 HIS A 64 ZN ZN A 300 1555 1555 2.15 LINK NE2 HIS A 68 ZN ZN A 300 1555 1555 2.15 SITE 1 AC1 4 CYS A 20 CYS A 23 HIS A 36 HIS A 40 SITE 1 AC2 4 CYS A 48 CYS A 51 HIS A 64 HIS A 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1