HEADER TRANSFERASE, SIGNALING PROTEIN 07-MAY-11 2LCS TITLE YEAST NBP2P SH3 DOMAIN IN COMPLEX WITH A PEPTIDE FROM STE20P COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAP1-BINDING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN RESIDUES 110-172; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SERINE/THREONINE-PROTEIN KINASE STE20; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: SEQUENCE DATABASE RESIDUES 468-483; COMPND 10 EC: 2.7.11.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: NBP2, YDR162C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292 KEYWDS ADAPTOR, TRANSFERASE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.GORELIK,A.R.DAVIDSON REVDAT 3 01-MAY-24 2LCS 1 REMARK SEQADV REVDAT 2 11-APR-12 2LCS 1 JRNL REVDAT 1 01-FEB-12 2LCS 0 JRNL AUTH M.GORELIK,A.R.DAVIDSON JRNL TITL DISTINCT PEPTIDE BINDING SPECIFICITIES OF SRC HOMOLOGY 3 JRNL TITL 2 (SH3) PROTEIN DOMAINS CAN BE DETERMINED BY MODULATION OF JRNL TITL 3 LOCAL ENERGETICS ACROSS THE BINDING INTERFACE. JRNL REF J.BIOL.CHEM. V. 287 9168 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22277653 JRNL DOI 10.1074/JBC.M111.330753 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, CYANA REMARK 3 AUTHORS : GODDARD (SPARKY), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000102238. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 NBP2 SH3, 1.4 MM STE20 PEPTIDE, REMARK 210 100 MM SODIUM CHLORIDE, 50 MM REMARK 210 SODIUM PHOSPHATE, 0.05% % SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O; 0.7 MM [U- REMARK 210 99% 13C; U-99% 15N] NBP2 SH3, REMARK 210 1.4 MM STE20 PEPTIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 50 MM SODIUM REMARK 210 PHOSPHATE, 0.05 % SODIUM AZIDE, REMARK 210 100% D2O; 0.7 MM [U-99% 13C; U- REMARK 210 99% 15N] NBP2 SH3, 0.7 MM STE20 REMARK 210 PEPTIDE, 100 MM SODIUM CHLORIDE, REMARK 210 50 MM SODIUM PHOSPHATE, 0.05 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 NBP2 SH3, 0.7 MM STE20 PEPTIDE, REMARK 210 100 MM SODIUM CHLORIDE, 50 MM REMARK 210 SODIUM PHOSPHATE, 0.05 % SODIUM REMARK 210 AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; N15 C13 FILTERED 2D 1H-1H REMARK 210 TOCSY; 15N C13 FILTERED 2D 1H-1H REMARK 210 NOESY; 13C HALF-FILTERED 3D 1H- REMARK 210 13C NOESY; 13C FILTERED 2D 1H-1H REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA, NMRPIPE, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 30 149.27 -173.86 REMARK 500 1 GLU A 61 25.18 -156.57 REMARK 500 1 ILE B -6 84.13 -153.21 REMARK 500 1 PRO B 3 -170.02 -69.78 REMARK 500 2 TYR A 30 148.60 -174.67 REMARK 500 2 GLU A 61 23.56 -151.27 REMARK 500 2 LYS B -8 79.45 -113.73 REMARK 500 3 ALA A -3 63.73 -107.14 REMARK 500 3 TYR A 30 148.06 -174.16 REMARK 500 3 ASN A 41 -174.77 -66.32 REMARK 500 3 GLU A 61 26.90 -158.65 REMARK 500 3 ILE B -6 88.28 -152.98 REMARK 500 3 PRO B 0 -169.24 -69.73 REMARK 500 4 ASN A 1 59.45 -93.59 REMARK 500 4 TYR A 30 149.24 -174.58 REMARK 500 4 GLU A 61 22.23 -150.78 REMARK 500 4 PRO B 0 -177.94 -69.79 REMARK 500 4 PRO B 3 -178.48 -69.72 REMARK 500 5 TYR A 30 147.19 -174.00 REMARK 500 5 GLU A 61 25.78 -153.57 REMARK 500 5 ILE B -6 85.36 -153.36 REMARK 500 5 PRO B 0 -177.35 -69.78 REMARK 500 6 TYR A 30 146.74 -174.37 REMARK 500 6 ASN A 41 -175.19 -67.57 REMARK 500 6 GLU A 61 25.26 -152.64 REMARK 500 6 ILE B -6 88.12 -163.66 REMARK 500 6 PRO B 3 -171.87 -69.79 REMARK 500 7 ASN A 16 13.68 -140.92 REMARK 500 7 TYR A 30 147.52 -174.32 REMARK 500 7 ASN A 41 -175.05 -67.94 REMARK 500 7 GLU A 61 22.15 -153.54 REMARK 500 7 PRO B 0 -170.55 -69.76 REMARK 500 8 TYR A 30 149.87 -174.27 REMARK 500 8 GLU A 61 25.01 -154.27 REMARK 500 8 ILE B -6 84.87 -155.47 REMARK 500 8 PRO B 0 -176.24 -69.76 REMARK 500 9 ASN A 1 60.96 61.72 REMARK 500 9 ASN A 16 12.51 -141.16 REMARK 500 9 GLU A 61 24.23 -153.03 REMARK 500 9 SER B -4 59.95 -117.18 REMARK 500 10 ALA A -3 54.83 -97.64 REMARK 500 10 ASN A 1 60.32 60.02 REMARK 500 10 TYR A 30 146.79 -174.10 REMARK 500 10 ASN A 41 -174.82 -58.57 REMARK 500 10 GLU A 61 26.14 -153.93 REMARK 500 11 ASN A 16 13.44 -142.35 REMARK 500 11 TYR A 30 147.34 -174.75 REMARK 500 11 ASN A 41 -175.08 -58.16 REMARK 500 11 GLU A 61 39.02 -161.39 REMARK 500 11 ILE B -6 90.05 -173.52 REMARK 500 REMARK 500 THIS ENTRY HAS 92 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17629 RELATED DB: BMRB DBREF 2LCS A -2 61 UNP Q12163 NBP2_YEAST 110 172 DBREF 2LCS B -9 6 UNP Q03497 STE20_YEAST 468 483 SEQADV 2LCS MET A -4 UNP Q12163 EXPRESSION TAG SEQADV 2LCS ALA A -3 UNP Q12163 EXPRESSION TAG SEQADV 2LCS LEU A 62 UNP Q12163 EXPRESSION TAG SEQADV 2LCS GLU A 63 UNP Q12163 EXPRESSION TAG SEQADV 2LCS HIS A 64 UNP Q12163 EXPRESSION TAG SEQADV 2LCS HIS A 65 UNP Q12163 EXPRESSION TAG SEQADV 2LCS HIS A 66 UNP Q12163 EXPRESSION TAG SEQADV 2LCS HIS A 67 UNP Q12163 EXPRESSION TAG SEQADV 2LCS HIS A 68 UNP Q12163 EXPRESSION TAG SEQADV 2LCS HIS A 69 UNP Q12163 EXPRESSION TAG SEQRES 1 A 73 MET ALA ILE VAL ASN GLN ARG ALA VAL ALA LEU TYR ASP SEQRES 2 A 73 PHE GLU PRO GLU ASN ASP ASN GLU LEU ARG LEU ALA GLU SEQRES 3 A 73 GLY ASP ILE VAL PHE ILE SER TYR LYS HIS GLY GLN GLY SEQRES 4 A 73 TRP LEU VAL ALA GLU ASN GLU SER GLY SER LYS THR GLY SEQRES 5 A 73 LEU VAL PRO GLU GLU PHE VAL SER TYR ILE GLN PRO GLU SEQRES 6 A 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 16 GLY LYS PHE ILE PRO SER ARG PRO ALA PRO LYS PRO PRO SEQRES 2 B 16 SER SER ALA SHEET 1 A 5 THR A 47 PRO A 51 0 SHEET 2 A 5 TRP A 36 GLU A 40 -1 N LEU A 37 O VAL A 50 SHEET 3 A 5 ILE A 25 HIS A 32 -1 N PHE A 27 O GLU A 40 SHEET 4 A 5 GLN A 2 ALA A 6 -1 N ALA A 4 O VAL A 26 SHEET 5 A 5 VAL A 55 TYR A 57 -1 O SER A 56 N VAL A 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1