HEADER SIGNALING PROTEIN 09-MAY-11 2LCT TITLE SOLUTION STRUCTURE OF THE VAV1 SH2 DOMAIN COMPLEXED WITH A SYK-DERIVED TITLE 2 DOUBLY PHOSPHORYLATED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE VAV; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN RESIDUES 664-767; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TYROSINE-PROTEIN KINASE SYK; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: SEQUENCE DATABASE RESIDUES 338-350; COMPND 10 SYNONYM: SPLEEN TYROSINE KINASE; COMPND 11 EC: 2.7.10.2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VAV, VAV1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETTEV411; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090 KEYWDS PHOSPHOPEPTIDE, SYK KINASE, TYROSINE KINASE, PROTEIN-PEPTIDE COMPLEX, KEYWDS 2 PHOSPHORYLATED PEPTIDE, PHOSPHOTYROSINE BINDING DOMAIN, B CELL KEYWDS 3 SIGNALING PROTEIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CHEN,N.GORENSTEIN,C.POST REVDAT 4 14-JUN-23 2LCT 1 REMARK SEQADV LINK REVDAT 3 23-MAY-12 2LCT 1 JRNL VERSN REVDAT 2 08-JUN-11 2LCT 1 KEYWDS REVDAT 1 01-JUN-11 2LCT 0 JRNL AUTH C.H.CHEN,V.A.MARTIN,N.M.GORENSTEIN,R.L.GEAHLEN,C.B.POST JRNL TITL TWO CLOSELY SPACED TYROSINES REGULATE NFAT SIGNALING IN B JRNL TITL 2 CELLS VIA SYK ASSOCIATION WITH VAV. JRNL REF MOL.CELL.BIOL. V. 31 2984 2011 JRNL REFN ISSN 0270-7306 JRNL PMID 21606197 JRNL DOI 10.1128/MCB.05043-11 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000102239. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-13C; U-15N] PROTEIN, REMARK 210 20 MM TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 1.1 MM PEPTIDE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY; SINGLE X- REMARK 210 FILTERED NOESY; DOUBLE X- REMARK 210 FILTERED NOESY; DOUBLE X- REMARK 210 FILTERED TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 755 OG SER A 756 1.20 REMARK 500 O HIS A 669 HZ3 LYS A 766 1.24 REMARK 500 HZ1 LYS A 732 OD1 ASP B 348 1.24 REMARK 500 HZ1 LYS A 733 OD1 ASN A 748 1.24 REMARK 500 OG SER A 708 HD1 HIS A 717 1.25 REMARK 500 HZ2 LYS A 732 O ALA B 347 1.25 REMARK 500 OE2 GLU A 714 HZ2 LYS A 716 1.26 REMARK 500 HZ2 LYS A 719 OE2 GLU A 731 1.27 REMARK 500 HH21 ARG A 698 O VAL A 699 1.27 REMARK 500 O ALA A 686 HZ1 LYS A 710 1.28 REMARK 500 HZ2 LYS A 700 OD2 ASP A 701 1.28 REMARK 500 O LEU A 685 HZ2 LYS A 710 1.28 REMARK 500 HH21 ARG A 678 O VAL B 341 1.28 REMARK 500 HH22 ARG A 688 O GLU A 767 1.31 REMARK 500 O ALA A 702 HZ1 LYS A 719 1.31 REMARK 500 HE ARG A 736 OE1 GLU A 740 1.31 REMARK 500 H2 ASP B 338 OE2 GLU B 340 1.32 REMARK 500 O SER A 689 HG1 THR A 692 1.32 REMARK 500 H PHE A 693 O PHE A 763 1.33 REMARK 500 O THR A 692 H LYS A 710 1.33 REMARK 500 O GLY A 680 HG SER A 683 1.33 REMARK 500 HG SER A 749 OD2 ASP A 752 1.33 REMARK 500 HH21 ARG A 728 OE1 GLU A 731 1.33 REMARK 500 OE1 GLU A 682 HE2 HIS A 717 1.35 REMARK 500 HH21 ARG A 736 OE2 GLU A 740 1.35 REMARK 500 H GLY A 691 O LYS A 710 1.37 REMARK 500 HH21 ARG A 688 O PHE A 765 1.37 REMARK 500 H1 ASP B 338 OE2 GLU B 340 1.38 REMARK 500 OE1 GLU A 704 HH TYR A 727 1.38 REMARK 500 O MET A 676 HE ARG A 696 1.38 REMARK 500 HH22 ARG A 678 OE2 GLU B 343 1.38 REMARK 500 OD2 ASP A 690 H ASN A 712 1.38 REMARK 500 OE1 GLN A 664 HG1 THR A 739 1.39 REMARK 500 O GLY A 674 H GLN A 697 1.40 REMARK 500 HH TYR A 711 O ASP A 758 1.40 REMARK 500 O PTR B 342 H SER B 344 1.40 REMARK 500 O ALA A 723 H LEU A 726 1.41 REMARK 500 O ARG A 688 HZ3 LYS A 710 1.42 REMARK 500 H ALA A 673 O VAL A 695 1.42 REMARK 500 OE1 GLN A 746 HE21 GLN A 747 1.43 REMARK 500 O LYS A 733 HH TYR A 745 1.43 REMARK 500 O LEU A 750 H PHE A 754 1.45 REMARK 500 H1 GLY A 661 OD1 ASP A 665 1.47 REMARK 500 O GLU A 682 H ALA A 686 1.49 REMARK 500 O LEU A 738 H VAL A 742 1.51 REMARK 500 O ASP A 701 H ALA A 703 1.51 REMARK 500 O GLU A 677 H ALA A 681 1.52 REMARK 500 O TRP A 671 H VAL A 695 1.53 REMARK 500 HD21 ASN A 712 OE1 GLU A 714 1.54 REMARK 500 O LEU A 694 H SER A 708 1.54 REMARK 500 REMARK 500 THIS ENTRY HAS 1215 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 663 -107.13 -127.02 REMARK 500 1 ASP A 665 131.00 -37.99 REMARK 500 1 PRO A 675 60.70 -63.49 REMARK 500 1 ARG A 698 154.18 168.56 REMARK 500 1 VAL A 699 -143.66 -175.42 REMARK 500 1 LYS A 700 -32.83 -143.79 REMARK 500 1 ASP A 701 -77.53 -170.95 REMARK 500 1 ALA A 702 46.58 -63.17 REMARK 500 1 ALA A 703 172.38 169.33 REMARK 500 1 GLU A 704 -70.01 -126.01 REMARK 500 1 ASN A 712 53.58 90.22 REMARK 500 1 THR A 722 56.72 -114.58 REMARK 500 1 GLU A 724 21.30 46.92 REMARK 500 1 GLU A 731 -8.13 75.36 REMARK 500 1 PHE A 754 -112.76 -81.74 REMARK 500 1 LYS A 755 -98.61 -154.54 REMARK 500 1 ASP A 758 55.44 -158.57 REMARK 500 1 THR A 759 -158.04 -165.83 REMARK 500 1 LEU A 761 85.46 -58.70 REMARK 500 1 PRO A 764 -165.75 -74.60 REMARK 500 1 THR B 339 -17.06 -45.36 REMARK 500 1 PTR B 342 83.14 -63.14 REMARK 500 1 GLU B 343 43.66 -60.82 REMARK 500 1 SER B 344 63.56 39.34 REMARK 500 1 ALA B 347 -85.10 171.06 REMARK 500 2 HIS A 662 -49.77 66.08 REMARK 500 2 GLN A 664 38.81 -155.49 REMARK 500 2 PRO A 675 63.14 -60.42 REMARK 500 2 ARG A 698 41.18 -168.62 REMARK 500 2 LYS A 700 -50.60 -165.49 REMARK 500 2 ASP A 701 -72.83 -82.04 REMARK 500 2 ALA A 702 1.34 -163.17 REMARK 500 2 GLU A 704 -82.61 -106.35 REMARK 500 2 ASN A 712 54.44 82.94 REMARK 500 2 GLU A 724 22.63 48.10 REMARK 500 2 GLU A 731 -5.84 74.08 REMARK 500 2 PHE A 754 -107.66 -79.20 REMARK 500 2 LYS A 755 -101.13 -158.00 REMARK 500 2 SER A 756 21.75 -78.41 REMARK 500 2 ASP A 758 54.24 -164.95 REMARK 500 2 THR A 759 -160.01 -166.85 REMARK 500 2 LEU A 761 85.46 -58.08 REMARK 500 2 PRO A 764 -165.83 -78.35 REMARK 500 2 THR B 339 -177.45 -68.64 REMARK 500 2 GLU B 343 53.94 -63.48 REMARK 500 2 SER B 344 64.79 39.98 REMARK 500 2 ALA B 347 -92.29 173.67 REMARK 500 2 PRO B 349 58.39 -68.96 REMARK 500 3 MET A 663 -87.33 -150.12 REMARK 500 3 PRO A 675 71.90 -63.25 REMARK 500 REMARK 500 THIS ENTRY HAS 479 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17632 RELATED DB: BMRB DBREF 2LCT A 664 767 UNP P15498 VAV_HUMAN 664 767 DBREF 2LCT B 338 350 UNP P48025 KSYK_MOUSE 338 350 SEQADV 2LCT GLY A 661 UNP P15498 EXPRESSION TAG SEQADV 2LCT HIS A 662 UNP P15498 EXPRESSION TAG SEQADV 2LCT MET A 663 UNP P15498 EXPRESSION TAG SEQRES 1 A 107 GLY HIS MET GLN ASP LEU SER VAL HIS LEU TRP TYR ALA SEQRES 2 A 107 GLY PRO MET GLU ARG ALA GLY ALA GLU SER ILE LEU ALA SEQRES 3 A 107 ASN ARG SER ASP GLY THR PHE LEU VAL ARG GLN ARG VAL SEQRES 4 A 107 LYS ASP ALA ALA GLU PHE ALA ILE SER ILE LYS TYR ASN SEQRES 5 A 107 VAL GLU VAL LYS HIS ILE LYS ILE MET THR ALA GLU GLY SEQRES 6 A 107 LEU TYR ARG ILE THR GLU LYS LYS ALA PHE ARG GLY LEU SEQRES 7 A 107 THR GLU LEU VAL GLU PHE TYR GLN GLN ASN SER LEU LYS SEQRES 8 A 107 ASP CYS PHE LYS SER LEU ASP THR THR LEU GLN PHE PRO SEQRES 9 A 107 PHE LYS GLU SEQRES 1 B 13 ASP THR GLU VAL PTR GLU SER PRO PTR ALA ASP PRO GLU MODRES 2LCT PTR B 342 TYR O-PHOSPHOTYROSINE MODRES 2LCT PTR B 346 TYR O-PHOSPHOTYROSINE HET PTR B 342 24 HET PTR B 346 24 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR 2(C9 H12 N O6 P) HELIX 1 1 GLU A 677 ARG A 688 1 12 HELIX 2 2 GLY A 737 GLN A 746 1 10 HELIX 3 3 SER A 749 PHE A 754 1 6 SHEET 1 A 4 TYR A 672 GLY A 674 0 SHEET 2 A 4 PHE A 693 GLN A 697 1 O VAL A 695 N ALA A 673 SHEET 3 A 4 PHE A 705 LYS A 710 -1 O SER A 708 N LEU A 694 SHEET 4 A 4 VAL A 715 LYS A 719 -1 O LYS A 716 N ILE A 709 SHEET 1 B 3 MET A 721 ALA A 723 0 SHEET 2 B 3 LEU A 726 ARG A 728 -1 O LEU A 726 N ALA A 723 SHEET 3 B 3 ALA A 734 PHE A 735 -1 O PHE A 735 N TYR A 727 LINK C VAL B 341 N PTR B 342 1555 1555 1.33 LINK C PTR B 342 N GLU B 343 1555 1555 1.32 LINK C PRO B 345 N PTR B 346 1555 1555 1.33 LINK C PTR B 346 N ALA B 347 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1