HEADER PROTEIN TRANSPORT 30-MAY-11 2LDN OBSLTE 18-JUL-12 2LDN TITLE SOLUTION STRUCTURE OF FGF1-SSR128129E COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARIN-BINDING GROWTH FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES IN UNP 23-152; COMPND 5 SYNONYM: HBGF-1, ACIDIC FIBROBLAST GROWTH FACTOR, AFGF, BETA- COMPND 6 ENDOTHELIAL CELL GROWTH FACTOR, ECGF-BETA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FGF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET20B KEYWDS FIBROBLAST GROWTH FACTOR, BETA SHEET PROTEIN, PROTEIN-DRUG COMPLEX, KEYWDS 2 PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.K.MOHAN,S.G.RANI,C.YU REVDAT 2 18-JUL-12 2LDN 1 JRNL OBSLTE REVDAT 1 06-JUN-12 2LDN 0 JRNL AUTH S.K.MOHAN,S.G.RANI,I.M.CHIU,C.YU JRNL TITL WITHDRAWN: INTERACTION OF FGF1 WITH A NOVEL ANTI-ANGIOGENIC JRNL TITL 2 DRUG SSR128129E JRNL REF ARCH.BIOCHEM.BIOPHYS. 2012 JRNL REFN ESSN 1096-0384 JRNL PMID 22683470 JRNL DOI 10.1016/J.ABB.2012.05.020 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THIS ENTRY IS OBSOLETED DUE TO WITHDRAWN OF PRIMARY PAPER. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-11. REMARK 100 THE RCSB ID CODE IS RCSB102267. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM [U-100% 13C; U-100% 15N] REMARK 210 FGF1-1, 2.1MM SSR-2, 25MM SODIUM REMARK 210 PHOSPHATE-3, 100MM AMMONIUM REMARK 210 SULFATE-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCO; 3D HNCACB; 3D HBHA(CO)NH; REMARK 210 3D HN(CO)CA; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 13C-FILTER NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, VNMRJ, SPARKY, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 31 51.43 -96.72 REMARK 500 1 HIS A 86 -51.98 -160.15 REMARK 500 1 HIS A 95 54.78 -112.97 REMARK 500 1 ASN A 99 64.00 64.42 REMARK 500 2 LYS A 2 -66.34 -144.63 REMARK 500 2 HIS A 86 -55.31 -158.33 REMARK 500 2 HIS A 95 71.41 -118.02 REMARK 500 2 ASN A 99 68.42 63.87 REMARK 500 3 HIS A 86 -53.38 -158.53 REMARK 500 3 HIS A 95 59.26 -117.83 REMARK 500 3 ASN A 99 60.74 62.24 REMARK 500 4 LYS A 2 -59.47 -127.25 REMARK 500 4 HIS A 86 -56.70 -161.40 REMARK 500 4 ASN A 99 70.25 61.96 REMARK 500 5 HIS A 86 -54.63 -158.08 REMARK 500 5 ASN A 99 72.01 58.46 REMARK 500 6 LYS A 2 -60.66 -139.26 REMARK 500 6 SER A 31 46.84 -95.33 REMARK 500 6 HIS A 86 -50.29 -164.44 REMARK 500 6 HIS A 95 62.00 -107.09 REMARK 500 6 ASN A 99 63.17 62.61 REMARK 500 7 HIS A 86 -53.99 -160.56 REMARK 500 7 HIS A 95 64.47 -109.78 REMARK 500 7 ASN A 99 75.88 61.91 REMARK 500 8 LYS A 2 -54.36 -139.04 REMARK 500 8 HIS A 86 -54.58 -162.15 REMARK 500 8 ASN A 99 77.52 62.33 REMARK 500 9 HIS A 86 -51.60 -164.42 REMARK 500 9 HIS A 95 62.88 -104.61 REMARK 500 9 ASN A 99 65.28 62.77 REMARK 500 10 HIS A 86 -50.49 -161.60 REMARK 500 10 HIS A 95 56.93 -110.00 REMARK 500 10 ASN A 99 63.81 62.82 REMARK 500 11 HIS A 86 -52.45 -163.82 REMARK 500 11 HIS A 95 60.35 -112.55 REMARK 500 12 LYS A 2 -51.52 -120.38 REMARK 500 12 HIS A 86 -54.03 -160.12 REMARK 500 12 HIS A 95 66.65 -112.26 REMARK 500 12 ASN A 99 68.01 61.20 REMARK 500 13 HIS A 86 -50.10 -160.90 REMARK 500 13 HIS A 95 54.39 -107.16 REMARK 500 13 ASN A 99 79.27 68.54 REMARK 500 14 HIS A 86 -51.41 -162.46 REMARK 500 14 HIS A 95 60.19 -105.90 REMARK 500 14 ASN A 99 68.99 60.65 REMARK 500 15 HIS A 86 -52.75 -160.39 REMARK 500 15 HIS A 95 57.54 -118.95 REMARK 500 15 ASN A 99 67.56 64.15 REMARK 500 16 HIS A 86 -51.46 -162.98 REMARK 500 16 HIS A 95 62.53 -109.38 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SSF A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SSF A 132 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17674 RELATED DB: BMRB DBREF 2LDN A 1 130 UNP P05230 FGF1_HUMAN 23 152 SEQRES 1 A 130 TYR LYS LYS PRO LYS LEU LEU TYR CYS SER ASN GLY GLY SEQRES 2 A 130 HIS PHE LEU ARG ILE LEU PRO ASP GLY THR VAL ASP GLY SEQRES 3 A 130 THR ARG ASP ARG SER ASP GLN HIS ILE GLN LEU GLN LEU SEQRES 4 A 130 SER ALA GLU SER VAL GLY GLU VAL TYR ILE LYS SER THR SEQRES 5 A 130 GLU THR GLY GLN TYR LEU ALA MET ASP THR ASP GLY LEU SEQRES 6 A 130 LEU TYR GLY SER GLN THR PRO ASN GLU GLU CYS LEU PHE SEQRES 7 A 130 LEU GLU ARG LEU GLU GLU ASN HIS TYR ASN THR TYR ILE SEQRES 8 A 130 SER LYS LYS HIS ALA GLU LYS ASN TRP PHE VAL GLY LEU SEQRES 9 A 130 LYS LYS ASN GLY SER CYS LYS ARG GLY PRO ARG THR HIS SEQRES 10 A 130 TYR GLY GLN LYS ALA ILE LEU PHE LEU PRO LEU PRO VAL HET SSF A 131 38 HET SSF A 132 38 HETNAM SSF 2-AMINO-5-[(1-METHOXY-2-METHYLINDOLIZIN-3-YL) HETNAM 2 SSF CARBONYL]BENZOIC ACID FORMUL 2 SSF 2(C18 H16 N2 O4) HELIX 1 1 ASN A 73 CYS A 76 5 4 SHEET 1 A 2 LEU A 6 CYS A 9 0 SHEET 2 A 2 PHE A 125 LEU A 128 -1 O LEU A 128 N LEU A 6 SHEET 1 B 2 PHE A 15 ILE A 18 0 SHEET 2 B 2 VAL A 24 THR A 27 -1 O THR A 27 N PHE A 15 SHEET 1 C 4 LEU A 37 ALA A 41 0 SHEET 2 C 4 GLU A 46 SER A 51 -1 O LYS A 50 N GLN A 38 SHEET 3 C 4 PHE A 78 GLU A 83 -1 O PHE A 78 N VAL A 47 SHEET 4 C 4 TYR A 87 SER A 92 -1 O THR A 89 N ARG A 81 SHEET 1 D 2 TYR A 57 MET A 60 0 SHEET 2 D 2 LEU A 66 SER A 69 -1 O SER A 69 N TYR A 57 SITE 1 AC1 4 GLN A 33 THR A 52 GLU A 53 VAL A 130 SITE 1 AC2 3 GLU A 83 GLU A 84 GLY A 119 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1