data_2LDO # _entry.id 2LDO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2LDO RCSB RCSB102268 BMRB 16842 WWPDB D_1000102268 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 16842 _pdbx_database_related.db_name BMRB _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LDO _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-30 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Morgado, L.' 1 'Paixao, V.B.' 2 'Bruix, M.' 3 'Salgueiro, C.A.' 4 # _citation.id primary _citation.title ;Revealing the structural origin of the redox-Bohr effect: the first solution structure of a cytochrome from Geobacter sulfurreducens. ; _citation.journal_abbrev Biochem.J. _citation.journal_volume 441 _citation.page_first 179 _citation.page_last 187 _citation.year 2012 _citation.journal_id_ASTM BIJOAK _citation.country UK _citation.journal_id_ISSN 0264-6021 _citation.journal_id_CSD 0043 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21861844 _citation.pdbx_database_id_DOI 10.1042/BJ20111103 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morgado, L.' 1 ? primary 'Paixao, V.B.' 2 ? primary 'Schiffer, M.' 3 ? primary 'Pokkuluri, P.R.' 4 ? primary 'Bruix, M.' 5 ? primary 'Salgueiro, C.A.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytochrome c3' 7748.149 1 ? ? 'sequence database residues 21-91' ? 2 non-polymer syn 'HEME C' 618.503 3 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PpcA # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ADDIVLKAKNGDVKFPHKAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEEMKKGPTKCGECHKK _entity_poly.pdbx_seq_one_letter_code_can ADDIVLKAKNGDVKFPHKAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEEMKKGPTKCGECHKK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 ASP n 1 4 ILE n 1 5 VAL n 1 6 LEU n 1 7 LYS n 1 8 ALA n 1 9 LYS n 1 10 ASN n 1 11 GLY n 1 12 ASP n 1 13 VAL n 1 14 LYS n 1 15 PHE n 1 16 PRO n 1 17 HIS n 1 18 LYS n 1 19 ALA n 1 20 HIS n 1 21 GLN n 1 22 LYS n 1 23 ALA n 1 24 VAL n 1 25 PRO n 1 26 ASP n 1 27 CYS n 1 28 LYS n 1 29 LYS n 1 30 CYS n 1 31 HIS n 1 32 GLU n 1 33 LYS n 1 34 GLY n 1 35 PRO n 1 36 GLY n 1 37 LYS n 1 38 ILE n 1 39 GLU n 1 40 GLY n 1 41 PHE n 1 42 GLY n 1 43 LYS n 1 44 GLU n 1 45 MET n 1 46 ALA n 1 47 HIS n 1 48 GLY n 1 49 LYS n 1 50 GLY n 1 51 CYS n 1 52 LYS n 1 53 GLY n 1 54 CYS n 1 55 HIS n 1 56 GLU n 1 57 GLU n 1 58 MET n 1 59 LYS n 1 60 LYS n 1 61 GLY n 1 62 PRO n 1 63 THR n 1 64 LYS n 1 65 CYS n 1 66 GLY n 1 67 GLU n 1 68 CYS n 1 69 HIS n 1 70 LYS n 1 71 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'GSU0612, ppcA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter sulfurreducens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 35554 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PCK32 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8GGK7_GEOSL _struct_ref.pdbx_db_accession Q8GGK7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ADDIVLKAKNGDVKFPHKAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEEMKKGPTKCGECHKK _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LDO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 71 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8GGK7 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 71 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEC non-polymer . 'HEME C' ? 'C34 H34 Fe N4 O4' 618.503 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D 1H-15N NOESY' 1 3 1 '3D 1H-15N TOCSY' 1 4 2 '2D 1H-1H TOCSY' 1 5 2 '2D 1H-1H NOESY' 1 6 2 '2D 1H-1H COSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.pH 7.1 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1 mM [U-100% 15N] CYTOCHROME C3-1, 1 mM PROTOPORPHYRIN IX CONTAINING FE-2, 45 mM sodium phosphate-3, 0.04 % sodium azide-4, 93% H2O/7% D2O ; 1 '93% H2O/7% D2O' '1 mM CYTOCHROME C3-5, 1 mM PROTOPORPHYRIN IX CONTAINING FE-6, 45 mM sodium phosphate-7, 0.04 % sodium azide-8, 93% H2O/7% D2O' 2 '93% H2O/7% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'BRUKER AVANCE' # _pdbx_nmr_refine.entry_id 2LDO _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LDO _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LDO _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin ? 1 'Bruker Biospin' processing TopSpin ? 2 Goddard 'chemical shift assignment' Sparky ? 3 'D.L.TURNER,L,BRENNAN,S.G.CHAMBERLIN, R.O.LOURO, A.V.XAVIER' 'structure solution calculation' PARADYANA ? 4 'D.L.TURNER,L,BRENNAN,S.G.CHAMBERLIN, R.O.LOURO, A.V.XAVIER' refinement PARADYANA ? 5 'Koradi, Billeter and Wuthrich' superimposition MOLMOL ? 6 'Koradi, Billeter and Wuthrich' 'visual inspection' MOLMOL ? 7 'Koradi, Billeter and Wuthrich' 'rms and mean structure calculations' MOLMOL ? 8 'Laskowski and MacArthur' 'identification and classification of the consensus secondary structure' PROCHECKNMR ? 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LDO _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LDO _struct.title 'Solution structure of triheme cytochrome PpcA from Geobacter sulfurreducens reveals the structural origin of the redox-Bohr effect' _struct.pdbx_descriptor 'Cytochrome c3' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LDO _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'ELECTRON TRANSFER, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 18 ? ALA A 23 ? LYS A 18 ALA A 23 1 ? 6 HELX_P HELX_P2 2 GLY A 42 ? GLY A 48 ? GLY A 42 GLY A 48 1 ? 7 HELX_P HELX_P3 3 CYS A 51 ? LYS A 59 ? CYS A 51 LYS A 59 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 27 SG ? ? ? 1_555 B HEC . CAB ? ? A CYS 27 A HEC 130 1_555 ? ? ? ? ? ? ? 1.851 ? ? covale2 covale none ? A CYS 30 SG ? ? ? 1_555 B HEC . CAC ? ? A CYS 30 A HEC 130 1_555 ? ? ? ? ? ? ? 1.810 ? ? covale3 covale none ? A CYS 51 SG ? ? ? 1_555 C HEC . CAB ? ? A CYS 51 A HEC 154 1_555 ? ? ? ? ? ? ? 1.835 ? ? covale4 covale none ? A CYS 54 SG ? ? ? 1_555 C HEC . CAC ? ? A CYS 54 A HEC 154 1_555 ? ? ? ? ? ? ? 1.810 ? ? covale5 covale none ? A CYS 65 SG ? ? ? 1_555 D HEC . CAB ? ? A CYS 65 A HEC 168 1_555 ? ? ? ? ? ? ? 1.872 ? ? covale6 covale none ? A CYS 68 SG ? ? ? 1_555 D HEC . CAC ? ? A CYS 68 A HEC 168 1_555 ? ? ? ? ? ? ? 1.810 ? ? metalc1 metalc ? ? A HIS 17 NE2 ? ? ? 1_555 B HEC . FE ? ? A HIS 17 A HEC 130 1_555 ? ? ? ? ? ? ? 1.888 ? ? metalc2 metalc ? ? A HIS 20 NE2 ? ? ? 1_555 C HEC . FE ? ? A HIS 20 A HEC 154 1_555 ? ? ? ? ? ? ? 1.924 ? ? metalc3 metalc ? ? A HIS 31 NE2 ? ? ? 1_555 B HEC . FE ? ? A HIS 31 A HEC 130 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc4 metalc ? ? A HIS 47 NE2 ? ? ? 1_555 D HEC . FE ? ? A HIS 47 A HEC 168 1_555 ? ? ? ? ? ? ? 1.887 ? ? metalc5 metalc ? ? A HIS 55 NE2 ? ? ? 1_555 C HEC . FE ? ? A HIS 55 A HEC 154 1_555 ? ? ? ? ? ? ? 1.986 ? ? metalc6 metalc ? ? A HIS 69 NE2 ? ? ? 1_555 D HEC . FE ? ? A HIS 69 A HEC 168 1_555 ? ? ? ? ? ? ? 1.986 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 3 ? LEU A 6 ? ASP A 3 LEU A 6 A 2 VAL A 13 ? PRO A 16 ? VAL A 13 PRO A 16 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LEU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 6 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 6 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 13 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 13 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HEC 130 ? 9 'BINDING SITE FOR RESIDUE HEC A 130' AC2 Software A HEC 154 ? 8 'BINDING SITE FOR RESIDUE HEC A 154' AC3 Software A HEC 168 ? 15 'BINDING SITE FOR RESIDUE HEC A 168' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 LEU A 6 ? LEU A 6 . ? 1_555 ? 2 AC1 9 HIS A 17 ? HIS A 17 . ? 1_555 ? 3 AC1 9 ASP A 26 ? ASP A 26 . ? 1_555 ? 4 AC1 9 CYS A 27 ? CYS A 27 . ? 1_555 ? 5 AC1 9 CYS A 30 ? CYS A 30 . ? 1_555 ? 6 AC1 9 HIS A 31 ? HIS A 31 . ? 1_555 ? 7 AC1 9 PRO A 35 ? PRO A 35 . ? 1_555 ? 8 AC1 9 ILE A 38 ? ILE A 38 . ? 1_555 ? 9 AC1 9 PHE A 41 ? PHE A 41 . ? 1_555 ? 10 AC2 8 PHE A 15 ? PHE A 15 . ? 1_555 ? 11 AC2 8 HIS A 20 ? HIS A 20 . ? 1_555 ? 12 AC2 8 ALA A 23 ? ALA A 23 . ? 1_555 ? 13 AC2 8 GLY A 50 ? GLY A 50 . ? 1_555 ? 14 AC2 8 CYS A 51 ? CYS A 51 . ? 1_555 ? 15 AC2 8 CYS A 54 ? CYS A 54 . ? 1_555 ? 16 AC2 8 HIS A 55 ? HIS A 55 . ? 1_555 ? 17 AC2 8 PRO A 62 ? PRO A 62 . ? 1_555 ? 18 AC3 15 LEU A 6 ? LEU A 6 . ? 1_555 ? 19 AC3 15 LYS A 7 ? LYS A 7 . ? 1_555 ? 20 AC3 15 LYS A 9 ? LYS A 9 . ? 1_555 ? 21 AC3 15 VAL A 13 ? VAL A 13 . ? 1_555 ? 22 AC3 15 PHE A 41 ? PHE A 41 . ? 1_555 ? 23 AC3 15 LYS A 43 ? LYS A 43 . ? 1_555 ? 24 AC3 15 ALA A 46 ? ALA A 46 . ? 1_555 ? 25 AC3 15 HIS A 47 ? HIS A 47 . ? 1_555 ? 26 AC3 15 LYS A 52 ? LYS A 52 . ? 1_555 ? 27 AC3 15 HIS A 55 ? HIS A 55 . ? 1_555 ? 28 AC3 15 PRO A 62 ? PRO A 62 . ? 1_555 ? 29 AC3 15 LYS A 64 ? LYS A 64 . ? 1_555 ? 30 AC3 15 CYS A 65 ? CYS A 65 . ? 1_555 ? 31 AC3 15 CYS A 68 ? CYS A 68 . ? 1_555 ? 32 AC3 15 HIS A 69 ? HIS A 69 . ? 1_555 ? # _atom_sites.entry_id 2LDO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 CYS 65 65 65 CYS CYS A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 LYS 71 71 71 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC 1 130 130 HEC HEM A . C 2 HEC 1 154 154 HEC HEM A . D 2 HEC 1 168 168 HEC HEM A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 17 ? A HIS 17 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NA ? B HEC . ? A HEC 130 ? 1_555 87.5 ? 2 NE2 ? A HIS 17 ? A HIS 17 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NB ? B HEC . ? A HEC 130 ? 1_555 94.5 ? 3 NA ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NB ? B HEC . ? A HEC 130 ? 1_555 89.4 ? 4 NE2 ? A HIS 17 ? A HIS 17 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NC ? B HEC . ? A HEC 130 ? 1_555 94.1 ? 5 NA ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NC ? B HEC . ? A HEC 130 ? 1_555 174.4 ? 6 NB ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NC ? B HEC . ? A HEC 130 ? 1_555 95.9 ? 7 NE2 ? A HIS 17 ? A HIS 17 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 ND ? B HEC . ? A HEC 130 ? 1_555 89.0 ? 8 NA ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 ND ? B HEC . ? A HEC 130 ? 1_555 85.1 ? 9 NB ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 ND ? B HEC . ? A HEC 130 ? 1_555 173.3 ? 10 NC ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 ND ? B HEC . ? A HEC 130 ? 1_555 89.6 ? 11 NE2 ? A HIS 17 ? A HIS 17 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NE2 ? A HIS 31 ? A HIS 31 ? 1_555 171.5 ? 12 NA ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NE2 ? A HIS 31 ? A HIS 31 ? 1_555 86.5 ? 13 NB ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NE2 ? A HIS 31 ? A HIS 31 ? 1_555 91.4 ? 14 NC ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NE2 ? A HIS 31 ? A HIS 31 ? 1_555 91.4 ? 15 ND ? B HEC . ? A HEC 130 ? 1_555 FE ? B HEC . ? A HEC 130 ? 1_555 NE2 ? A HIS 31 ? A HIS 31 ? 1_555 84.5 ? 16 NE2 ? A HIS 20 ? A HIS 20 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NA ? C HEC . ? A HEC 154 ? 1_555 88.8 ? 17 NE2 ? A HIS 20 ? A HIS 20 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NB ? C HEC . ? A HEC 154 ? 1_555 89.6 ? 18 NA ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NB ? C HEC . ? A HEC 154 ? 1_555 85.7 ? 19 NE2 ? A HIS 20 ? A HIS 20 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NC ? C HEC . ? A HEC 154 ? 1_555 92.1 ? 20 NA ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NC ? C HEC . ? A HEC 154 ? 1_555 176.1 ? 21 NB ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NC ? C HEC . ? A HEC 154 ? 1_555 90.6 ? 22 NE2 ? A HIS 20 ? A HIS 20 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 ND ? C HEC . ? A HEC 154 ? 1_555 92.2 ? 23 NA ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 ND ? C HEC . ? A HEC 154 ? 1_555 89.2 ? 24 NB ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 ND ? C HEC . ? A HEC 154 ? 1_555 174.5 ? 25 NC ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 ND ? C HEC . ? A HEC 154 ? 1_555 94.5 ? 26 NE2 ? A HIS 20 ? A HIS 20 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NE2 ? A HIS 55 ? A HIS 55 ? 1_555 175.0 ? 27 NA ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NE2 ? A HIS 55 ? A HIS 55 ? 1_555 87.3 ? 28 NB ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NE2 ? A HIS 55 ? A HIS 55 ? 1_555 87.0 ? 29 NC ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NE2 ? A HIS 55 ? A HIS 55 ? 1_555 91.5 ? 30 ND ? C HEC . ? A HEC 154 ? 1_555 FE ? C HEC . ? A HEC 154 ? 1_555 NE2 ? A HIS 55 ? A HIS 55 ? 1_555 90.9 ? 31 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NA ? D HEC . ? A HEC 168 ? 1_555 84.6 ? 32 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NB ? D HEC . ? A HEC 168 ? 1_555 93.7 ? 33 NA ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NB ? D HEC . ? A HEC 168 ? 1_555 88.0 ? 34 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NC ? D HEC . ? A HEC 168 ? 1_555 95.1 ? 35 NA ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NC ? D HEC . ? A HEC 168 ? 1_555 175.5 ? 36 NB ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NC ? D HEC . ? A HEC 168 ? 1_555 96.6 ? 37 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 ND ? D HEC . ? A HEC 168 ? 1_555 91.6 ? 38 NA ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 ND ? D HEC . ? A HEC 168 ? 1_555 84.8 ? 39 NB ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 ND ? D HEC . ? A HEC 168 ? 1_555 170.6 ? 40 NC ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 ND ? D HEC . ? A HEC 168 ? 1_555 90.7 ? 41 NE2 ? A HIS 47 ? A HIS 47 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 168.2 ? 42 NA ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 84.6 ? 43 NB ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 90.6 ? 44 NC ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 95.3 ? 45 ND ? D HEC . ? A HEC 168 ? 1_555 FE ? D HEC . ? A HEC 168 ? 1_555 NE2 ? A HIS 69 ? A HIS 69 ? 1_555 82.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-09-07 2 'Structure model' 1 1 2011-12-28 3 'Structure model' 2 0 2021-03-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Experimental preparation' 6 3 'Structure model' 'Non-polymer description' 7 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_entity_nonpoly 5 3 'Structure model' pdbx_nmr_sample_details 6 3 'Structure model' pdbx_nmr_software 7 3 'Structure model' pdbx_nmr_spectrometer 8 3 'Structure model' pdbx_nonpoly_scheme 9 3 'Structure model' pdbx_struct_conn_angle 10 3 'Structure model' struct_conn 11 3 'Structure model' struct_conn_type 12 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.Cartn_x' 2 3 'Structure model' '_atom_site.Cartn_y' 3 3 'Structure model' '_atom_site.Cartn_z' 4 3 'Structure model' '_atom_site.auth_atom_id' 5 3 'Structure model' '_atom_site.auth_comp_id' 6 3 'Structure model' '_atom_site.label_atom_id' 7 3 'Structure model' '_atom_site.label_comp_id' 8 3 'Structure model' '_atom_site.type_symbol' 9 3 'Structure model' '_chem_comp.formula' 10 3 'Structure model' '_chem_comp.formula_weight' 11 3 'Structure model' '_chem_comp.id' 12 3 'Structure model' '_chem_comp.name' 13 3 'Structure model' '_chem_comp.pdbx_synonyms' 14 3 'Structure model' '_entity.formula_weight' 15 3 'Structure model' '_entity.pdbx_description' 16 3 'Structure model' '_pdbx_entity_nonpoly.comp_id' 17 3 'Structure model' '_pdbx_entity_nonpoly.name' 18 3 'Structure model' '_pdbx_nmr_sample_details.contents' 19 3 'Structure model' '_pdbx_nmr_software.name' 20 3 'Structure model' '_pdbx_nmr_spectrometer.model' 21 3 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 22 3 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 29 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 30 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 31 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 32 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 33 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 34 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 35 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 36 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 37 3 'Structure model' '_pdbx_struct_conn_angle.value' 38 3 'Structure model' '_struct_conn.conn_type_id' 39 3 'Structure model' '_struct_conn.id' 40 3 'Structure model' '_struct_conn.pdbx_dist_value' 41 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 42 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 43 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 44 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 45 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 46 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 47 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 48 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 49 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 50 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 51 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 52 3 'Structure model' '_struct_conn_type.id' 53 3 'Structure model' '_struct_site.details' 54 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 55 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 56 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'CYTOCHROME C3-1' 1 ? mM '[U-100% 15N]' 1 'PROTOPORPHYRIN IX CONTAINING FE-2' 1 ? mM ? 1 'sodium phosphate-3' 45 ? mM ? 1 'sodium azide-4' 0.04 ? % ? 1 'CYTOCHROME C3-5' 1 ? mM ? 2 'PROTOPORPHYRIN IX CONTAINING FE-6' 1 ? mM ? 2 'sodium phosphate-7' 45 ? mM ? 2 'sodium azide-8' 0.04 ? % ? 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.50 2 1 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 3 1 O A ASP 2 ? ? H A HIS 17 ? ? 1.58 4 2 O A LYS 18 ? ? H A GLN 21 ? ? 1.54 5 2 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.55 6 2 O A ASP 2 ? ? H A HIS 17 ? ? 1.55 7 3 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.51 8 3 O A LYS 18 ? ? H A GLN 21 ? ? 1.54 9 4 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.52 10 4 O A ASP 2 ? ? H A HIS 17 ? ? 1.55 11 4 O A LYS 18 ? ? H A GLN 21 ? ? 1.57 12 5 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.53 13 5 O A ASP 2 ? ? H A HIS 17 ? ? 1.53 14 5 O A LYS 18 ? ? H A GLN 21 ? ? 1.54 15 6 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.51 16 6 O A LYS 18 ? ? H A GLN 21 ? ? 1.54 17 7 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.50 18 7 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 19 7 O A ASP 2 ? ? H A HIS 17 ? ? 1.57 20 8 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.51 21 8 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 22 9 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.51 23 9 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 24 10 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 25 10 O A ASP 2 ? ? H A HIS 17 ? ? 1.56 26 10 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.57 27 11 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.51 28 11 O A ASP 2 ? ? H A HIS 17 ? ? 1.54 29 11 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 30 11 O A GLY 42 ? ? H A ALA 46 ? ? 1.60 31 12 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.51 32 12 O A ASP 2 ? ? H A HIS 17 ? ? 1.52 33 12 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 34 13 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.52 35 13 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 36 13 O A ALA 1 ? ? H A ASP 3 ? ? 1.60 37 14 O A ASP 2 ? ? H A HIS 17 ? ? 1.52 38 14 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 39 15 O A LYS 18 ? ? H A GLN 21 ? ? 1.58 40 16 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.51 41 16 O A LYS 18 ? ? H A GLN 21 ? ? 1.56 42 16 O A CYS 54 ? ? H A MET 58 ? ? 1.57 43 17 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.50 44 17 O A LYS 18 ? ? H A GLN 21 ? ? 1.56 45 18 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.48 46 18 O A GLY 42 ? ? H A ALA 46 ? ? 1.49 47 18 O A LYS 18 ? ? H A GLN 21 ? ? 1.54 48 18 O A ASP 2 ? ? H A HIS 17 ? ? 1.56 49 19 O A ASP 2 ? ? H A HIS 17 ? ? 1.51 50 19 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.52 51 19 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 52 20 O A GLY 11 ? ? HD1 A HIS 69 ? ? 1.51 53 20 O A LYS 18 ? ? H A GLN 21 ? ? 1.55 54 20 O A ASP 2 ? ? H A HIS 17 ? ? 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 18 ? ? -140.35 -68.06 2 1 LYS A 33 ? ? -91.89 31.24 3 1 PHE A 41 ? ? -33.61 150.10 4 1 LYS A 43 ? ? -57.95 -78.20 5 1 GLU A 44 ? ? -34.93 -37.87 6 1 LYS A 49 ? ? -86.83 37.03 7 1 CYS A 51 ? ? -128.30 -86.09 8 1 HIS A 55 ? ? -45.76 -71.18 9 2 ASP A 2 ? ? -37.37 -39.03 10 2 LYS A 18 ? ? -141.32 -68.04 11 2 LYS A 33 ? ? -91.45 31.41 12 2 PHE A 41 ? ? -38.12 159.96 13 2 LYS A 43 ? ? -60.95 -78.69 14 2 GLU A 44 ? ? -34.87 -36.61 15 2 LYS A 49 ? ? -86.28 39.70 16 2 CYS A 51 ? ? -123.47 -85.75 17 2 HIS A 55 ? ? -53.49 -71.54 18 3 ASP A 2 ? ? -169.87 -41.39 19 3 LYS A 18 ? ? -140.51 -68.17 20 3 PHE A 41 ? ? -33.67 150.44 21 3 LYS A 43 ? ? -57.94 -77.97 22 3 GLU A 44 ? ? -34.99 -36.68 23 3 LYS A 49 ? ? -87.08 38.87 24 3 CYS A 51 ? ? -123.57 -85.71 25 3 HIS A 55 ? ? -53.09 -71.53 26 4 ASP A 2 ? ? -172.63 -40.87 27 4 HIS A 17 ? ? -79.48 49.63 28 4 LYS A 18 ? ? -138.56 -68.01 29 4 PHE A 41 ? ? -37.68 158.94 30 4 LYS A 43 ? ? -60.40 -78.37 31 4 GLU A 44 ? ? -34.70 -36.76 32 4 LYS A 49 ? ? -85.03 40.48 33 4 CYS A 51 ? ? -124.70 -86.38 34 4 HIS A 55 ? ? -46.15 -70.63 35 5 ASP A 2 ? ? -38.43 -37.24 36 5 HIS A 17 ? ? -80.58 48.99 37 5 LYS A 18 ? ? -139.25 -68.13 38 5 LYS A 33 ? ? -92.53 30.30 39 5 PHE A 41 ? ? -37.85 159.22 40 5 LYS A 43 ? ? -59.97 -78.61 41 5 GLU A 44 ? ? -34.82 -37.11 42 5 LYS A 49 ? ? -85.52 38.86 43 5 CYS A 51 ? ? -126.35 -86.92 44 5 HIS A 55 ? ? -45.73 -71.21 45 6 HIS A 17 ? ? -80.16 48.08 46 6 LYS A 18 ? ? -137.47 -69.01 47 6 LYS A 33 ? ? -91.77 31.21 48 6 PHE A 41 ? ? -38.27 160.32 49 6 LYS A 43 ? ? -59.30 -78.53 50 6 GLU A 44 ? ? -35.01 -37.37 51 6 LYS A 49 ? ? -85.55 39.16 52 6 CYS A 51 ? ? -124.92 -86.63 53 6 HIS A 55 ? ? -45.47 -71.18 54 7 LYS A 18 ? ? -142.09 -67.84 55 7 PRO A 25 ? ? -39.78 -27.64 56 7 LYS A 33 ? ? -91.80 31.11 57 7 PHE A 41 ? ? -38.20 159.77 58 7 LYS A 43 ? ? -60.35 -78.30 59 7 GLU A 44 ? ? -34.81 -36.35 60 7 LYS A 49 ? ? -85.36 41.08 61 7 CYS A 51 ? ? -122.84 -85.99 62 7 HIS A 55 ? ? -53.93 -71.95 63 8 LYS A 18 ? ? -141.22 -68.16 64 8 LYS A 33 ? ? -91.43 30.59 65 8 PHE A 41 ? ? -38.44 160.49 66 8 LYS A 43 ? ? -59.94 -78.06 67 8 GLU A 44 ? ? -34.98 -36.53 68 8 LYS A 49 ? ? -84.18 42.26 69 8 CYS A 51 ? ? -121.97 -86.44 70 8 HIS A 55 ? ? -48.16 -72.37 71 9 ASP A 2 ? ? 75.77 -51.39 72 9 HIS A 17 ? ? -81.19 48.20 73 9 LYS A 18 ? ? -138.13 -68.17 74 9 PRO A 25 ? ? -39.46 -27.97 75 9 PHE A 41 ? ? -38.50 160.08 76 9 LYS A 43 ? ? -60.16 -78.29 77 9 GLU A 44 ? ? -34.62 -36.54 78 9 LYS A 49 ? ? -84.18 42.38 79 9 CYS A 51 ? ? -123.33 -85.09 80 9 HIS A 55 ? ? -46.36 -71.25 81 10 LYS A 18 ? ? -140.90 -68.12 82 10 PRO A 25 ? ? -39.49 -27.89 83 10 PHE A 41 ? ? -34.26 151.24 84 10 LYS A 43 ? ? -56.75 -78.02 85 10 GLU A 44 ? ? -34.63 -36.98 86 10 LYS A 49 ? ? -86.93 38.57 87 10 CYS A 51 ? ? -123.36 -86.71 88 10 HIS A 55 ? ? -53.86 -71.75 89 11 ASP A 2 ? ? -38.84 -36.74 90 11 HIS A 17 ? ? -79.27 49.79 91 11 LYS A 18 ? ? -140.32 -66.79 92 11 LYS A 33 ? ? -91.71 31.09 93 11 PHE A 41 ? ? -33.83 150.58 94 11 LYS A 43 ? ? -57.76 -77.32 95 11 GLU A 44 ? ? -35.35 -37.68 96 11 LYS A 49 ? ? -86.06 38.56 97 11 CYS A 51 ? ? -125.59 -85.52 98 11 HIS A 55 ? ? -53.23 -71.73 99 12 HIS A 17 ? ? -80.53 47.95 100 12 LYS A 18 ? ? -139.04 -67.13 101 12 PHE A 41 ? ? -33.54 150.01 102 12 LYS A 43 ? ? -57.91 -77.97 103 12 GLU A 44 ? ? -34.86 -36.71 104 12 LYS A 49 ? ? -87.00 38.68 105 12 CYS A 51 ? ? -123.97 -85.04 106 12 HIS A 55 ? ? -53.63 -71.96 107 13 ASP A 2 ? ? 70.92 -54.63 108 13 HIS A 17 ? ? -79.14 48.82 109 13 LYS A 18 ? ? -138.08 -68.22 110 13 PHE A 41 ? ? -38.62 160.47 111 13 LYS A 43 ? ? -60.10 -78.00 112 13 GLU A 44 ? ? -34.46 -36.44 113 13 LYS A 49 ? ? -83.71 43.92 114 13 CYS A 51 ? ? -121.00 -84.63 115 13 HIS A 55 ? ? -52.39 -72.10 116 14 HIS A 17 ? ? -79.12 48.94 117 14 LYS A 18 ? ? -139.59 -66.92 118 14 LYS A 33 ? ? -91.89 31.27 119 14 PHE A 41 ? ? -39.50 162.15 120 14 LYS A 43 ? ? -60.98 -78.19 121 14 GLU A 44 ? ? -34.97 -35.92 122 14 LYS A 49 ? ? -84.06 44.33 123 14 CYS A 51 ? ? -120.87 -83.53 124 14 HIS A 55 ? ? -54.11 -70.56 125 15 LYS A 18 ? ? -140.33 -69.22 126 15 PRO A 25 ? ? -38.81 -27.62 127 15 LYS A 33 ? ? -91.55 31.04 128 15 PHE A 41 ? ? -38.17 159.92 129 15 LYS A 43 ? ? -62.40 -78.53 130 15 GLU A 44 ? ? -34.80 -36.01 131 15 LYS A 49 ? ? -85.73 40.96 132 15 CYS A 51 ? ? -121.73 -86.05 133 15 HIS A 55 ? ? -52.33 -72.96 134 16 ASP A 2 ? ? -155.47 -45.20 135 16 LYS A 18 ? ? -139.79 -68.73 136 16 PRO A 25 ? ? -38.84 -27.69 137 16 LYS A 33 ? ? -91.33 30.00 138 16 PHE A 41 ? ? -33.37 149.98 139 16 LYS A 43 ? ? -57.90 -78.14 140 16 GLU A 44 ? ? -35.01 -37.05 141 16 LYS A 49 ? ? -88.11 36.54 142 16 CYS A 51 ? ? -126.74 -85.37 143 16 HIS A 55 ? ? -50.09 -70.97 144 17 ASP A 2 ? ? -168.47 -45.84 145 17 LYS A 18 ? ? -140.17 -67.68 146 17 PHE A 41 ? ? -38.42 160.27 147 17 LYS A 43 ? ? -60.27 -78.35 148 17 GLU A 44 ? ? -35.25 -36.37 149 17 LYS A 49 ? ? -86.25 39.99 150 17 CYS A 51 ? ? -122.95 -86.78 151 17 HIS A 55 ? ? -54.18 -72.31 152 18 ASP A 2 ? ? -165.47 -41.99 153 18 LYS A 18 ? ? -141.78 -68.60 154 18 LYS A 33 ? ? -91.56 30.01 155 18 PHE A 41 ? ? -33.11 149.43 156 18 LYS A 43 ? ? -52.18 -77.06 157 18 GLU A 44 ? ? -35.66 -38.54 158 18 LYS A 49 ? ? -86.03 39.99 159 18 CYS A 51 ? ? -125.26 -87.34 160 18 HIS A 55 ? ? -46.32 -70.56 161 19 HIS A 17 ? ? -79.97 47.47 162 19 LYS A 18 ? ? -138.21 -67.60 163 19 PRO A 25 ? ? -39.78 -27.18 164 19 LYS A 33 ? ? -92.14 30.93 165 19 PHE A 41 ? ? -33.69 150.03 166 19 LYS A 43 ? ? -58.29 -77.91 167 19 GLU A 44 ? ? -35.10 -36.69 168 19 LYS A 49 ? ? -87.50 37.77 169 19 CYS A 51 ? ? -126.03 -85.04 170 19 HIS A 55 ? ? -51.94 -70.76 171 20 ASP A 2 ? ? -35.90 -37.72 172 20 HIS A 17 ? ? -80.63 49.31 173 20 LYS A 18 ? ? -140.47 -68.15 174 20 LYS A 33 ? ? -91.35 31.31 175 20 PHE A 41 ? ? -38.47 160.32 176 20 LYS A 43 ? ? -60.29 -78.55 177 20 GLU A 44 ? ? -34.68 -36.78 178 20 LYS A 49 ? ? -86.98 39.18 179 20 CYS A 51 ? ? -124.76 -86.67 180 20 HIS A 55 ? ? -54.26 -70.42 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'HEME C' _pdbx_entity_nonpoly.comp_id HEC #