HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-JUN-11 2LE1 TITLE SOLUTION NMR STRUCTURE OF TFU_2981 FROM THERMOBIFIDA FUSCA, NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET TFR85A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1-143; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 269800; SOURCE 4 STRAIN: YX; SOURCE 5 GENE: TFU_2981; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.V.S.R.K.PULAVARTI,A.ELETSKY,J.L.MILLS,D.K.SUKUMARAN,D.WANG, AUTHOR 2 C.CICCOSANTI,K.HAMILTON,B.ROST,T.B.ACTON,R.XIAO,J.K.EVERETT,H.LEE, AUTHOR 3 J.H.PRESTEGARD,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (NESG) REVDAT 5 14-JUN-23 2LE1 1 REMARK SEQADV REVDAT 4 15-AUG-12 2LE1 1 KEYWDS REVDAT 3 29-FEB-12 2LE1 1 AUTHOR JRNL REVDAT 2 22-FEB-12 2LE1 1 VERSN KEYWDS REVDAT 1 29-JUN-11 2LE1 0 JRNL AUTH S.V.S.R.K.PULAVARTI,A.ELETSKY,J.L.MILLS,D.K.SUKUMARAN, JRNL AUTH 2 D.WANG,C.CICCOSANTI,K.HAMILTON,B.ROST,T.B.ACTON,R.XIAO, JRNL AUTH 3 J.K.EVERETT,H.LEE,J.H.PRESTEGARD,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF TFU_2981 FROM THERMOBIFIDA FUSCA, JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TFR85A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 BY CYANA AND AUTOSTRUCTURE IN PARALLEL USING NOE-BASED REMARK 3 CONSTRAINTS AND PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. REMARK 3 CONSENSUS PEAK ASSIGNMENTS GENERATED FROM THESE PARALLEL RUNS REMARK 3 WERE SELECTED AND USED FOR FURTHER REFINEMENT WITH CYANA, THE REMARK 3 RDC CONSTRAINTS WERE ADDED AT LATER STAGES. A TOTAL OF 20 REMARK 3 CONFORMERS OUT OF 100 CONFORMERS WITH THE LOWEST TARGET FUNCTION REMARK 3 WERE SELECTED FOR REFINEMENT WITH CNS USING CNS WATER BATH REMARK 3 REFINEMENT. REMARK 4 REMARK 4 2LE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000102279. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.11 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 TFR85A, 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 50 UM DSS, REMARK 210 5 MM CALCIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.338 MM [U-5% 13C; U-100% 15N] REMARK 210 TFR85A, 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 50 UM DSS, REMARK 210 5 MM CALCIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 12.5 MG/ML PF1 REMARK 210 PHAGE, 90% H2O/10% D2O; 1.338 MM REMARK 210 [U-5% 13C; U-100% 15N] TFR85A, REMARK 210 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 50 UM DSS, REMARK 210 5 MM CALCIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 4 % PEG, 90% H2O/ REMARK 210 10% D2O; 1.338 MM [U-5% 13C; U- REMARK 210 100% 15N] TFR85A, 20 MM MES, 100 REMARK 210 MM SODIUM CHLORIDE, 10 MM DTT, REMARK 210 50 UM DSS, 5 MM CALCIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C CT REMARK 210 -HSQC; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D SIMUTANEOUS 13C- REMARK 210 AROMATIC,13C-ALIPHATIC,15N REMARK 210 EDITED 1H-1H NOESY; 3D HN(CA)CO; REMARK 210 3D HCCH-TOCSY; (4,3)D GFT HCCH- REMARK 210 COSY-ALIPHATIC; (4,3)D GFT HCCH- REMARK 210 COSY-AROMATIC; 2D 1H-13C CT-HSQC REMARK 210 AROMATIC; 2D 1H-13C CT-HSQC REMARK 210 METHYL; 2D J-MODULATION 1H-15N REMARK 210 HSQC; 2D 1H-15N LR-HSQC FOR REMARK 210 HISTIDINE; 3D HBHA(CO)NH; 2D (HB) REMARK 210 CB(CGCDCE)HDHE REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ; 750 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, AUTOSTRUCTURE 2.1, REMARK 210 AUTOASSIGN 2.3.0, NMRPIPE, PROSA REMARK 210 6.4, TOPSPIN 2.1, PSVS, TALOS+, REMARK 210 PALES, CARA 1.8.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 24 -59.73 73.88 REMARK 500 1 ALA A 36 105.17 60.09 REMARK 500 1 ALA A 42 -31.50 70.11 REMARK 500 1 SER A 43 137.64 83.13 REMARK 500 1 PRO A 47 98.45 -48.50 REMARK 500 1 PRO A 85 88.86 -63.92 REMARK 500 1 THR A 87 -76.90 -100.75 REMARK 500 1 ASP A 99 -169.35 -118.75 REMARK 500 1 HIS A 146 152.20 55.79 REMARK 500 2 SER A 35 -71.37 -72.75 REMARK 500 2 ALA A 36 104.38 -169.62 REMARK 500 2 ALA A 42 -92.49 56.63 REMARK 500 2 SER A 43 148.98 168.40 REMARK 500 2 ALA A 55 96.62 67.89 REMARK 500 2 THR A 57 -81.63 -104.59 REMARK 500 2 GLU A 58 -35.74 -173.59 REMARK 500 2 THR A 87 -91.62 -95.36 REMARK 500 2 ARG A 143 -90.07 57.60 REMARK 500 2 HIS A 147 154.75 70.63 REMARK 500 2 HIS A 149 63.75 61.22 REMARK 500 3 ALA A 2 31.43 -168.61 REMARK 500 3 SER A 35 -74.59 -73.26 REMARK 500 3 ALA A 36 103.32 -167.51 REMARK 500 3 ALA A 42 -90.03 67.31 REMARK 500 3 SER A 43 150.11 179.77 REMARK 500 3 ALA A 55 108.80 65.03 REMARK 500 3 THR A 57 -79.98 -116.27 REMARK 500 3 GLU A 58 -54.03 177.42 REMARK 500 3 PRO A 85 82.01 -68.92 REMARK 500 3 THR A 87 -75.65 -83.94 REMARK 500 3 ASP A 99 175.28 67.85 REMARK 500 3 ASP A 100 -86.73 60.26 REMARK 500 3 ARG A 101 43.09 -153.09 REMARK 500 3 HIS A 148 -51.47 -151.76 REMARK 500 3 HIS A 149 117.37 60.13 REMARK 500 3 HIS A 150 -86.81 -131.76 REMARK 500 4 ALA A 12 141.71 -174.08 REMARK 500 4 ALA A 36 110.06 70.28 REMARK 500 4 ALA A 42 -79.97 -96.97 REMARK 500 4 PRO A 47 103.40 -56.48 REMARK 500 4 ALA A 55 95.68 71.73 REMARK 500 4 THR A 87 -79.11 -77.14 REMARK 500 4 ARG A 143 -4.60 76.56 REMARK 500 5 ALA A 36 85.97 57.41 REMARK 500 5 ALA A 42 -104.46 57.97 REMARK 500 5 PRO A 44 0.58 -63.58 REMARK 500 5 THR A 87 -78.23 -82.78 REMARK 500 5 ARG A 90 103.25 -165.47 REMARK 500 5 HIS A 149 120.38 -34.10 REMARK 500 6 SER A 35 51.33 -90.89 REMARK 500 REMARK 500 THIS ENTRY HAS 216 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 14 ARG A 51 0.08 SIDE CHAIN REMARK 500 18 ARG A 51 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TFR85A RELATED DB: TARGETDB REMARK 900 RELATED ID: 17688 RELATED DB: BMRB DBREF 2LE1 A 1 143 UNP Q47KK8 Q47KK8_THEFY 1 143 SEQADV 2LE1 LEU A 144 UNP Q47KK8 EXPRESSION TAG SEQADV 2LE1 GLU A 145 UNP Q47KK8 EXPRESSION TAG SEQADV 2LE1 HIS A 146 UNP Q47KK8 EXPRESSION TAG SEQADV 2LE1 HIS A 147 UNP Q47KK8 EXPRESSION TAG SEQADV 2LE1 HIS A 148 UNP Q47KK8 EXPRESSION TAG SEQADV 2LE1 HIS A 149 UNP Q47KK8 EXPRESSION TAG SEQADV 2LE1 HIS A 150 UNP Q47KK8 EXPRESSION TAG SEQADV 2LE1 HIS A 151 UNP Q47KK8 EXPRESSION TAG SEQRES 1 A 151 MET ALA THR LEU ARG ARG SER VAL GLU VAL ALA ALA PRO SEQRES 2 A 151 ALA ALA ASP VAL TRP THR LEU VAL GLY ASP PHE SER ALA SEQRES 3 A 151 ILE HIS ARG TRP HIS PRO GLN VAL SER ALA PRO THR LEU SEQRES 4 A 151 ARG GLY ALA SER PRO HIS THR PRO GLY ALA GLU ARG VAL SEQRES 5 A 151 PHE GLY ALA GLY THR GLU GLU GLU LEU VAL GLU ARG LEU SEQRES 6 A 151 VAL GLU ARG ASP GLU SER ALA ARG ARG LEU VAL TYR THR SEQRES 7 A 151 MET PRO ASP PRO PRO PHE PRO ILE THR ASN HIS ARG ALA SEQRES 8 A 151 VAL LEU GLU VAL VAL PRO ARG ASP ASP ARG HIS CYS THR SEQRES 9 A 151 VAL VAL TRP THR ALA MET PHE ASP CYS SER PRO GLU THR SEQRES 10 A 151 ALA ARG GLU LEU GLU SER VAL ILE GLY ASP GLY VAL PHE SEQRES 11 A 151 ALA VAL GLY LEU ASN ALA LEU ALA GLU ARG TYR GLY ARG SEQRES 12 A 151 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 PRO A 13 GLY A 22 1 10 HELIX 2 2 PHE A 24 TRP A 30 5 7 HELIX 3 3 SER A 114 ILE A 125 1 12 HELIX 4 4 GLY A 128 TYR A 141 1 14 SHEET 1 A 7 THR A 3 VAL A 10 0 SHEET 2 A 7 CYS A 103 PHE A 111 -1 O CYS A 103 N VAL A 10 SHEET 3 A 7 HIS A 89 PRO A 97 -1 N GLU A 94 O VAL A 106 SHEET 4 A 7 ARG A 74 ASP A 81 -1 N TYR A 77 O ALA A 91 SHEET 5 A 7 LEU A 61 ASP A 69 -1 N ARG A 64 O THR A 78 SHEET 6 A 7 GLU A 50 PHE A 53 -1 N PHE A 53 O LEU A 61 SHEET 7 A 7 PRO A 37 ARG A 40 -1 N ARG A 40 O GLU A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1