data_2LE4 # _entry.id 2LE4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LE4 pdb_00002le4 10.2210/pdb2le4/pdb RCSB RCSB102282 ? ? BMRB 17691 ? ? WWPDB D_1000102282 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 17691 BMRB unspecified . GO.103289 TargetDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LE4 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-06-06 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sahu, S.C.' 1 'Markley, J.L.' 2 'Tonelli, M.' 3 'Bahrami, A.' 4 'Eghbalnia, H.R.' 5 'Center for Eukaryotic Structural Genomics (CESG)' 6 # _citation.id primary _citation.title 'Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sahu, S.' 1 ? primary 'Markley, J.' 2 ? primary 'Tonelli, M.' 3 ? primary 'Bahrami, A.' 4 ? primary 'Eghbalnia, H.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Transcription factor SOX-2' _entity.formula_weight 9920.610 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'HMG box DNA binding residues 39-118' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK T ; _entity_poly.pdbx_seq_one_letter_code_can ;SDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK T ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier GO.103289 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASP n 1 3 ARG n 1 4 VAL n 1 5 LYS n 1 6 ARG n 1 7 PRO n 1 8 MET n 1 9 ASN n 1 10 ALA n 1 11 PHE n 1 12 MET n 1 13 VAL n 1 14 TRP n 1 15 SER n 1 16 ARG n 1 17 GLY n 1 18 GLN n 1 19 ARG n 1 20 ARG n 1 21 LYS n 1 22 MET n 1 23 ALA n 1 24 GLN n 1 25 GLU n 1 26 ASN n 1 27 PRO n 1 28 LYS n 1 29 MET n 1 30 HIS n 1 31 ASN n 1 32 SER n 1 33 GLU n 1 34 ILE n 1 35 SER n 1 36 LYS n 1 37 ARG n 1 38 LEU n 1 39 GLY n 1 40 ALA n 1 41 GLU n 1 42 TRP n 1 43 LYS n 1 44 LEU n 1 45 LEU n 1 46 SER n 1 47 GLU n 1 48 THR n 1 49 GLU n 1 50 LYS n 1 51 ARG n 1 52 PRO n 1 53 PHE n 1 54 ILE n 1 55 ASP n 1 56 GLU n 1 57 ALA n 1 58 LYS n 1 59 ARG n 1 60 LEU n 1 61 ARG n 1 62 ALA n 1 63 LEU n 1 64 HIS n 1 65 MET n 1 66 LYS n 1 67 GLU n 1 68 HIS n 1 69 PRO n 1 70 ASP n 1 71 TYR n 1 72 LYS n 1 73 TYR n 1 74 ARG n 1 75 PRO n 1 76 ARG n 1 77 ARG n 1 78 LYS n 1 79 THR n 1 80 LYS n 1 81 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SOX2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pEU-HIS _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SOX2_HUMAN _struct_ref.pdbx_db_accession P48431 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT ; _struct_ref.pdbx_align_begin 39 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LE4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 81 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P48431 _struct_ref_seq.db_align_beg 39 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 118 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 81 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2LE4 _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P48431 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 3 1 '3D_13C-separated_NOESY (AROMATIC)' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100 mM' _pdbx_nmr_exptl_sample_conditions.pH 6.7 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.7 mM [U-100% 13C; U-100% 15N] Sox2, 7 % DTT, 95% H2O, 5% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian Inova' # _pdbx_nmr_refine.entry_id 2LE4 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT. STRUCTURES ARE BASED ON A TOTAL OF 1766 NOE CONSTRAINTS ( 597 INTRA, 423 SEQUENTIAL, 224 MEDIUM and 522 LONG RANGE CONSTRAINTS) AND 197 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LE4 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LE4 _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_software.authors 'Brunger A. T. et.al.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LE4 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LE4 _struct.title 'Solution structure of the HMG box DNA-binding domain of human stem cell transcription factor Sox2' _struct.pdbx_model_details 'fewest violations, model 17' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LE4 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Structural Genomics, Protein Structure Initiative, PSI, Center for Eukaryotic Structural Genomics, TRANSCRIPTION, CESG' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 9 ? ASN A 26 ? ASN A 9 ASN A 26 1 ? 18 HELX_P HELX_P2 2 ASN A 31 ? LEU A 44 ? ASN A 31 LEU A 44 1 ? 14 HELX_P HELX_P3 3 SER A 46 ? LYS A 66 ? SER A 46 LYS A 66 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2LE4 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 MET 22 22 22 MET MET A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 THR 81 81 81 THR THR A . n # _pdbx_SG_project.full_name_of_center 'Center for Eukaryotic Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center CESG _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-27 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' struct_ref 4 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 5 2 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id Sox2-1 0.7 ? mM '[U-100% 13C; U-100% 15N]' 1 DTT-2 7 ? % ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LE4 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1183 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 205 _pdbx_nmr_constraints.NOE_long_range_total_count 168 _pdbx_nmr_constraints.NOE_medium_range_total_count 458 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 352 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HG3 A ARG 51 ? ? HD3 A PRO 52 ? ? 1.17 2 4 OD2 A ASP 2 ? ? HH11 A ARG 3 ? ? 1.59 3 8 HZ3 A LYS 21 ? ? OE2 A GLU 25 ? ? 1.56 4 9 HG3 A ARG 77 ? ? H A LYS 78 ? ? 1.35 5 9 O A LYS 78 ? ? HG1 A THR 79 ? ? 1.57 6 13 HZ2 A LYS 21 ? ? OE1 A GLU 25 ? ? 1.59 7 15 HZ2 A LYS 21 ? ? OE1 A GLU 25 ? ? 1.60 8 16 HZ1 A LYS 21 ? ? OE1 A GLU 56 ? ? 1.57 9 16 HH21 A ARG 20 ? ? OE2 A GLU 56 ? ? 1.59 10 18 HZ1 A LYS 21 ? ? OE2 A GLU 56 ? ? 1.56 11 20 OE1 A GLU 56 ? ? HH11 A ARG 59 ? ? 1.58 12 20 HZ3 A LYS 21 ? ? OE2 A GLU 56 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 30 ? ? -171.66 10.86 2 1 ASN A 31 ? ? -139.90 -152.20 3 1 LYS A 72 ? ? -103.70 -164.70 4 1 ARG A 76 ? ? -148.25 -51.50 5 1 THR A 79 ? ? -91.49 32.11 6 1 LYS A 80 ? ? -153.05 52.49 7 2 ASN A 26 ? ? -164.35 83.50 8 2 ASN A 31 ? ? 45.31 -87.94 9 2 ARG A 76 ? ? -74.00 -85.38 10 2 LYS A 78 ? ? -111.40 74.84 11 3 ASP A 2 ? ? 62.27 92.68 12 3 ASN A 26 ? ? -162.91 82.37 13 3 HIS A 68 ? ? -44.35 92.13 14 3 LYS A 80 ? ? 70.65 75.63 15 4 ASP A 2 ? ? -157.49 -154.35 16 4 VAL A 4 ? ? -124.43 -166.13 17 4 PRO A 7 ? ? -67.16 89.24 18 4 ASN A 26 ? ? -150.57 85.24 19 4 HIS A 30 ? ? -109.62 -64.53 20 4 ASN A 31 ? ? -134.41 -51.72 21 4 HIS A 68 ? ? 43.18 83.78 22 4 LYS A 72 ? ? -66.11 85.39 23 4 LYS A 78 ? ? 63.52 -173.18 24 4 THR A 79 ? ? -151.87 -56.89 25 4 LYS A 80 ? ? -173.40 119.77 26 5 HIS A 30 ? ? -135.06 -40.36 27 5 ASN A 31 ? ? -172.48 -73.69 28 5 HIS A 68 ? ? -160.87 85.66 29 5 ARG A 77 ? ? 68.08 -179.79 30 5 LYS A 80 ? ? -175.90 -44.02 31 6 ASP A 2 ? ? 63.59 106.59 32 6 VAL A 4 ? ? 66.38 149.09 33 6 ASN A 31 ? ? 75.05 -37.16 34 6 GLU A 67 ? ? 61.20 -163.07 35 6 HIS A 68 ? ? 66.88 82.33 36 6 LYS A 72 ? ? -164.54 23.31 37 6 PRO A 75 ? ? -67.13 94.56 38 6 ARG A 77 ? ? -174.07 138.27 39 7 ASP A 2 ? ? 64.10 94.51 40 7 VAL A 4 ? ? 52.34 105.57 41 7 ASN A 26 ? ? -163.63 86.39 42 7 ASN A 31 ? ? -168.60 -42.47 43 7 HIS A 68 ? ? -158.39 77.60 44 7 ARG A 76 ? ? 65.22 113.65 45 8 ASN A 26 ? ? -164.38 88.70 46 8 PRO A 27 ? ? -68.95 64.73 47 8 ASN A 31 ? ? -139.21 -73.95 48 8 LYS A 66 ? ? -101.16 -61.11 49 8 GLU A 67 ? ? 57.68 167.88 50 8 ARG A 77 ? ? -161.65 116.12 51 8 LYS A 78 ? ? 66.91 158.64 52 9 ASN A 26 ? ? -160.23 86.40 53 9 HIS A 68 ? ? 75.13 144.42 54 9 TYR A 71 ? ? 72.95 153.09 55 9 PRO A 75 ? ? -77.18 -164.62 56 9 ARG A 77 ? ? 54.73 -163.42 57 9 THR A 79 ? ? 66.43 -37.18 58 10 ASN A 26 ? ? -160.82 78.76 59 10 HIS A 30 ? ? -89.56 -79.46 60 10 ASN A 31 ? ? -169.95 -42.70 61 10 GLU A 67 ? ? -76.43 -163.67 62 11 VAL A 4 ? ? 54.42 -175.64 63 11 ASN A 9 ? ? -66.76 -173.04 64 11 ASN A 31 ? ? 75.85 -24.44 65 11 LYS A 72 ? ? 75.07 -64.29 66 11 ARG A 76 ? ? 71.18 -36.29 67 11 THR A 79 ? ? -178.62 143.35 68 12 ASP A 2 ? ? 72.27 179.24 69 12 PRO A 27 ? ? -57.48 -1.30 70 12 HIS A 30 ? ? -136.00 -38.33 71 12 ASN A 31 ? ? -140.97 -83.07 72 12 GLU A 67 ? ? 60.17 -159.77 73 12 ARG A 76 ? ? 177.19 -44.89 74 13 ASP A 2 ? ? 60.56 104.16 75 13 TYR A 71 ? ? 66.52 -166.02 76 13 PRO A 75 ? ? -57.00 97.29 77 13 THR A 79 ? ? 49.46 -164.67 78 14 ASN A 26 ? ? -155.40 86.77 79 14 ASN A 31 ? ? 52.40 -85.97 80 14 TYR A 71 ? ? 61.34 93.55 81 14 LYS A 72 ? ? -127.15 -164.29 82 14 ARG A 77 ? ? -127.26 -72.00 83 14 LYS A 78 ? ? 68.22 113.95 84 15 ARG A 3 ? ? -128.04 -164.79 85 15 ASN A 26 ? ? -154.26 88.33 86 15 GLU A 67 ? ? 60.91 -163.02 87 15 HIS A 68 ? ? 75.11 162.25 88 15 PRO A 69 ? ? -78.04 -164.88 89 15 LYS A 72 ? ? -172.34 22.25 90 15 LYS A 80 ? ? 60.95 81.08 91 16 ASP A 2 ? ? 57.16 79.12 92 16 ASN A 26 ? ? -168.74 86.71 93 16 HIS A 30 ? ? -91.27 -78.39 94 16 ASN A 31 ? ? -135.87 -59.28 95 16 GLU A 67 ? ? 51.03 -161.69 96 16 LYS A 72 ? ? -169.51 20.92 97 16 THR A 79 ? ? 64.23 100.31 98 17 HIS A 30 ? ? -88.26 -78.27 99 17 ASN A 31 ? ? -167.72 -32.07 100 17 GLU A 67 ? ? 57.15 -164.41 101 17 ARG A 77 ? ? -166.70 86.95 102 17 LYS A 78 ? ? -166.74 -47.95 103 18 PRO A 7 ? ? -39.30 138.25 104 18 HIS A 30 ? ? -97.97 -84.32 105 18 ASN A 31 ? ? 178.83 -31.82 106 18 LEU A 44 ? ? -109.56 40.71 107 18 GLU A 67 ? ? 68.69 173.08 108 18 PRO A 75 ? ? -55.39 98.69 109 18 ARG A 76 ? ? -96.88 -67.21 110 19 ASN A 9 ? ? -59.74 175.58 111 19 ASN A 26 ? ? -160.61 86.80 112 19 HIS A 30 ? ? -88.10 -75.22 113 19 ASN A 31 ? ? -168.27 -40.99 114 19 GLU A 67 ? ? -71.10 -164.53 115 19 ARG A 77 ? ? -104.99 -78.08 116 19 LYS A 78 ? ? -168.07 -47.30 117 20 LYS A 5 ? ? -69.23 96.64 118 20 ASN A 26 ? ? -164.63 86.36 119 20 ASN A 31 ? ? 62.50 -85.89 120 20 ARG A 77 ? ? 67.19 163.81 #