HEADER METAL BINDING PROTEIN 16-JUN-11 2LEL TITLE STRUCTURE OF CU(I)CU(II)-COPK FROM CUPRIAVIDUS METALLIDURANS CH34 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER RESISTANCE PROTEIN K; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COPK; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS METALLIDURANS; SOURCE 3 ORGANISM_TAXID: 266264; SOURCE 4 STRAIN: CH34; SOURCE 5 GENE: COPK, RMET_6108; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PCX07 KEYWDS COPPER PROTEIN, COPPER TRANSPORT, COPPER RESISTANCE, BINDING KEYWDS 2 COOPERATIVITY, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.G.HINDS,Z.XIAO,L.X.CHONG,A.G.WEDD REVDAT 1 15-FEB-12 2LEL 0 JRNL AUTH M.R.ASH,L.X.CHONG,M.J.MAHER,M.G.HINDS,Z.XIAO,A.G.WEDD JRNL TITL MOLECULAR BASIS OF THE COOPERATIVE BINDING OF CU(I) AND JRNL TITL 2 CU(II) TO THE COPK PROTEIN FROM CUPRIAVIDUS METALLIDURANS JRNL TITL 3 CH34. JRNL REF BIOCHEMISTRY V. 50 9237 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21936507 JRNL DOI 10.1021/BI200841F REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-11. REMARK 100 THE RCSB ID CODE IS RCSB102298. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM CU(I)CU(II)-COPK-1, 95% REMARK 210 H2O/5% D2O; 1.0 MM [U-100% 13C; U REMARK 210 -100% 15N] CU(I)CU(II)-COPK-2, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, XEASY, TALOS, CYANA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 256 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 30 H LYS A 34 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 10.89 50.17 REMARK 500 1 ASP A 11 96.99 -61.26 REMARK 500 1 PHE A 21 -162.96 -100.12 REMARK 500 1 ASN A 37 92.63 -67.69 REMARK 500 1 LYS A 42 81.68 -69.14 REMARK 500 1 MET A 54 82.81 -65.58 REMARK 500 1 ASP A 63 92.72 -62.23 REMARK 500 1 GLU A 64 -171.45 53.44 REMARK 500 1 ARG A 67 75.69 57.26 REMARK 500 1 SER A 71 -84.09 -167.33 REMARK 500 2 ASP A 2 -72.98 -155.07 REMARK 500 2 ASN A 5 7.38 54.64 REMARK 500 2 VAL A 7 146.31 -172.73 REMARK 500 2 ASN A 37 94.92 -68.56 REMARK 500 2 MET A 54 82.34 -69.22 REMARK 500 2 LYS A 55 -70.99 -72.73 REMARK 500 2 ASP A 63 -82.62 55.12 REMARK 500 2 GLU A 64 -6.13 -152.23 REMARK 500 2 ALA A 65 14.34 47.94 REMARK 500 2 HIS A 70 -178.40 -177.18 REMARK 500 2 SER A 71 170.48 56.15 REMARK 500 2 GLU A 72 77.38 55.64 REMARK 500 3 ASP A 2 -59.67 -155.08 REMARK 500 3 ASN A 5 94.62 -168.15 REMARK 500 3 LYS A 31 -2.82 -55.89 REMARK 500 3 LYS A 42 77.50 -64.75 REMARK 500 3 VAL A 43 129.53 -39.69 REMARK 500 3 MET A 54 80.18 -58.67 REMARK 500 3 ILE A 59 -13.88 -46.48 REMARK 500 3 GLU A 64 -164.55 54.38 REMARK 500 3 ALA A 65 113.50 -173.55 REMARK 500 3 LEU A 66 -72.01 -72.24 REMARK 500 3 ARG A 67 -176.25 -62.92 REMARK 500 3 GLU A 72 -179.91 -60.60 REMARK 500 4 ASN A 5 -59.54 -176.55 REMARK 500 4 LYS A 8 142.15 -172.49 REMARK 500 4 ASN A 37 92.09 -65.86 REMARK 500 4 PRO A 39 155.29 -45.30 REMARK 500 4 VAL A 43 129.84 -36.87 REMARK 500 4 MET A 54 77.78 -69.36 REMARK 500 4 ILE A 59 -12.39 -49.36 REMARK 500 4 GLU A 64 -39.89 -172.11 REMARK 500 4 ALA A 65 -147.19 -78.77 REMARK 500 4 LEU A 66 -17.12 -174.77 REMARK 500 4 HIS A 70 -162.06 -164.26 REMARK 500 4 SER A 71 76.38 58.68 REMARK 500 4 GLU A 72 -34.62 -170.09 REMARK 500 5 ASP A 2 135.67 60.06 REMARK 500 5 ASP A 11 85.52 -67.65 REMARK 500 5 ASN A 30 -166.11 -59.68 REMARK 500 REMARK 500 THIS ENTRY HAS 221 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CU A 102 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 2 OD1 REMARK 620 2 HIS A 70 ND1 180.0 REMARK 620 3 HOH A 201 O 89.9 90.0 REMARK 620 4 VAL A 1 N 90.0 90.0 180.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CU1 A 101 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 44 SD REMARK 620 2 MET A 38 SD 106.4 REMARK 620 3 MET A 28 SD 108.5 109.8 REMARK 620 4 MET A 54 SD 108.1 113.3 110.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17716 RELATED DB: BMRB DBREF 2LEL A 1 74 UNP Q58AD3 COPK_RALME 21 94 SEQRES 1 A 74 VAL ASP MET SER ASN VAL VAL LYS THR TYR ASP LEU GLN SEQRES 2 A 74 ASP GLY SER LYS VAL HIS VAL PHE LYS ASP GLY LYS MET SEQRES 3 A 74 GLY MET GLU ASN LYS PHE GLY LYS SER MET ASN MET PRO SEQRES 4 A 74 GLU GLY LYS VAL MET GLU THR ARG ASP GLY THR LYS ILE SEQRES 5 A 74 ILE MET LYS GLY ASN GLU ILE PHE ARG LEU ASP GLU ALA SEQRES 6 A 74 LEU ARG LYS GLY HIS SER GLU GLY GLY HET CU1 A 101 1 HET CU A 102 1 HETNAM CU1 COPPER (I) ION HETNAM CU COPPER (II) ION FORMUL 2 CU1 CU 1+ FORMUL 3 CU CU 2+ FORMUL 4 HOH *(H2 O) HELIX 1 1 GLU A 58 LEU A 62 5 5 SHEET 1 A 4 TYR A 10 ASP A 11 0 SHEET 2 A 4 LYS A 17 VAL A 18 -1 O VAL A 18 N TYR A 10 SHEET 3 A 4 MET A 28 ASN A 30 -1 O GLU A 29 N LYS A 17 SHEET 4 A 4 LYS A 34 SER A 35 -1 O LYS A 34 N ASN A 30 SHEET 1 B 2 MET A 44 GLU A 45 0 SHEET 2 B 2 LYS A 51 ILE A 52 -1 O ILE A 52 N MET A 44 LINK OD1 ASP A 2 CU CU A 102 1555 1555 2.00 LINK ND1 HIS A 70 CU CU A 102 1555 1555 2.00 LINK CU CU A 102 O HOH A 201 1555 1555 2.00 LINK N VAL A 1 CU CU A 102 1555 1555 2.20 LINK SD MET A 44 CU CU1 A 101 1555 1555 2.30 LINK SD MET A 38 CU CU1 A 101 1555 1555 2.30 LINK SD MET A 28 CU CU1 A 101 1555 1555 2.31 LINK SD MET A 54 CU CU1 A 101 1555 1555 2.31 SITE 1 AC1 4 MET A 28 MET A 38 MET A 44 MET A 54 SITE 1 AC2 4 VAL A 1 ASP A 2 HIS A 70 HOH A 201 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1