HEADER MEMBRANE PROTEIN 15-JUL-11 2LFU TITLE THE STRUCTURE OF A N. MENINGITIDES PROTEIN TARGETED FOR VACCINE TITLE 2 DEVELOPMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GNA2132; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 246-428; COMPND 5 SYNONYM: PUTATIVE LIPOPROTEIN GNA2132; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 GENE: GNA2132; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21B+ KEYWDS BETA-BARREL, ANTIGEN, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR V.ESPOSITO,V.MUSI,C.DE CHIARA,G.KELLY,D.VEGGI,M.PIZZA,A.PASTORE REVDAT 4 14-JUN-23 2LFU 1 REMARK SEQADV REVDAT 3 28-DEC-11 2LFU 1 JRNL REVDAT 2 09-NOV-11 2LFU 1 REVDAT 1 19-OCT-11 2LFU 0 JRNL AUTH V.ESPOSITO,V.MUSI,C.DE CHIARA,D.VEGGI,D.SERRUTO,M.SCARSELLI, JRNL AUTH 2 G.KELLY,M.PIZZA,A.PASTORE JRNL TITL STRUCTURE OF THE C-TERMINAL DOMAIN OF NEISSERIA HEPARIN JRNL TITL 2 BINDING ANTIGEN (NHBA), ONE OF THE MAIN ANTIGENS OF A NOVEL JRNL TITL 3 VACCINE AGAINST NEISSERIA MENINGITIDIS. JRNL REF J.BIOL.CHEM. V. 286 41767 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21965688 JRNL DOI 10.1074/JBC.M111.289314 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LFU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000102340. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 GNA2132, 20 MM TRIS, 50 MM REMARK 210 SODIUM CHLORIDE, 30 MM DPC, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 2D 1H-15N HSQC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HNHA; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 243 REMARK 465 ALA A 244 REMARK 465 SER A 245 REMARK 465 LEU A 246 REMARK 465 PRO A 247 REMARK 465 ALA A 248 REMARK 465 GLU A 249 REMARK 465 MET A 250 REMARK 465 PRO A 251 REMARK 465 LEU A 252 REMARK 465 ILE A 253 REMARK 465 PRO A 254 REMARK 465 VAL A 255 REMARK 465 ASN A 256 REMARK 465 GLN A 257 REMARK 465 ALA A 258 REMARK 465 ASP A 259 REMARK 465 THR A 260 REMARK 465 LEU A 261 REMARK 465 ILE A 262 REMARK 465 VAL A 263 REMARK 465 ASP A 264 REMARK 465 GLY A 265 REMARK 465 GLU A 266 REMARK 465 ALA A 267 REMARK 465 VAL A 268 REMARK 465 SER A 269 REMARK 465 LEU A 270 REMARK 465 THR A 271 REMARK 465 GLY A 272 REMARK 465 HIS A 273 REMARK 465 SER A 274 REMARK 465 GLY A 275 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 281 -64.01 70.83 REMARK 500 1 THR A 288 143.66 -172.37 REMARK 500 1 ASN A 330 54.72 30.96 REMARK 500 1 PRO A 333 -173.93 -68.74 REMARK 500 1 HIS A 362 -66.16 -129.77 REMARK 500 1 ASN A 375 59.56 -97.57 REMARK 500 1 GLU A 383 -88.56 62.14 REMARK 500 1 THR A 410 -151.24 -87.56 REMARK 500 1 ASP A 411 91.30 -61.38 REMARK 500 1 ALA A 412 -78.82 61.74 REMARK 500 1 GLU A 413 132.88 71.04 REMARK 500 1 HIS A 430 -51.46 73.50 REMARK 500 1 HIS A 431 77.81 60.15 REMARK 500 1 HIS A 432 -78.71 -134.27 REMARK 500 1 HIS A 433 -36.42 -176.86 REMARK 500 2 ARG A 285 44.17 -140.50 REMARK 500 2 PRO A 295 41.14 -74.30 REMARK 500 2 ALA A 308 153.88 -47.51 REMARK 500 2 ARG A 332 78.06 -177.74 REMARK 500 2 TYR A 334 116.51 73.50 REMARK 500 2 HIS A 362 -73.35 -100.70 REMARK 500 2 ASN A 384 -45.04 -175.70 REMARK 500 2 PRO A 396 -40.46 -17.25 REMARK 500 2 ASP A 411 -67.22 -172.14 REMARK 500 2 ALA A 412 -48.47 -161.24 REMARK 500 2 HIS A 431 -52.74 -175.84 REMARK 500 2 HIS A 433 69.36 64.10 REMARK 500 3 ILE A 277 38.36 -80.03 REMARK 500 3 GLU A 281 161.92 72.76 REMARK 500 3 PRO A 295 106.14 -54.25 REMARK 500 3 ALA A 308 160.42 -49.09 REMARK 500 3 PRO A 333 -151.13 -66.31 REMARK 500 3 HIS A 362 -43.72 -178.65 REMARK 500 3 ASN A 375 44.60 28.85 REMARK 500 3 PRO A 396 -50.63 -16.15 REMARK 500 3 THR A 410 -46.71 -150.27 REMARK 500 3 ALA A 412 106.16 70.48 REMARK 500 3 HIS A 430 95.68 -63.61 REMARK 500 3 HIS A 431 101.69 -41.51 REMARK 500 4 ILE A 277 37.23 -88.99 REMARK 500 4 LEU A 313 -165.45 -65.79 REMARK 500 4 ALA A 314 -168.98 -76.25 REMARK 500 4 HIS A 327 118.38 -176.20 REMARK 500 4 HIS A 362 -14.95 -167.79 REMARK 500 4 ASN A 384 -72.68 -166.93 REMARK 500 4 GLU A 399 -9.99 -59.97 REMARK 500 4 PRO A 409 84.64 -66.31 REMARK 500 4 ASP A 411 -36.62 73.70 REMARK 500 4 HIS A 433 -35.70 -162.34 REMARK 500 5 PHE A 278 31.92 38.50 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 395 PRO A 396 7 -149.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16679 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENT DBREF 2LFU A 245 427 UNP Q9JPI1 Q9JPI1_NEIME 245 427 SEQADV 2LFU MET A 243 UNP Q9JPI1 EXPRESSION TAG SEQADV 2LFU ALA A 244 UNP Q9JPI1 EXPRESSION TAG SEQADV 2LFU LEU A 428 UNP Q9JPI1 EXPRESSION TAG SEQADV 2LFU GLU A 429 UNP Q9JPI1 EXPRESSION TAG SEQADV 2LFU HIS A 430 UNP Q9JPI1 EXPRESSION TAG SEQADV 2LFU HIS A 431 UNP Q9JPI1 EXPRESSION TAG SEQADV 2LFU HIS A 432 UNP Q9JPI1 EXPRESSION TAG SEQADV 2LFU HIS A 433 UNP Q9JPI1 EXPRESSION TAG SEQADV 2LFU HIS A 434 UNP Q9JPI1 EXPRESSION TAG SEQADV 2LFU HIS A 435 UNP Q9JPI1 EXPRESSION TAG SEQRES 1 A 193 MET ALA SER LEU PRO ALA GLU MET PRO LEU ILE PRO VAL SEQRES 2 A 193 ASN GLN ALA ASP THR LEU ILE VAL ASP GLY GLU ALA VAL SEQRES 3 A 193 SER LEU THR GLY HIS SER GLY ASN ILE PHE ALA PRO GLU SEQRES 4 A 193 GLY ASN TYR ARG TYR LEU THR TYR GLY ALA GLU LYS LEU SEQRES 5 A 193 PRO GLY GLY SER TYR ALA LEU ARG VAL GLN GLY GLU PRO SEQRES 6 A 193 ALA LYS GLY GLU MET LEU ALA GLY THR ALA VAL TYR ASN SEQRES 7 A 193 GLY GLU VAL LEU HIS PHE HIS THR GLU ASN GLY ARG PRO SEQRES 8 A 193 TYR PRO THR ARG GLY ARG PHE ALA ALA LYS VAL ASP PHE SEQRES 9 A 193 GLY SER LYS SER VAL ASP GLY ILE ILE ASP SER GLY ASP SEQRES 10 A 193 ASP LEU HIS MET GLY THR GLN LYS PHE LYS ALA ALA ILE SEQRES 11 A 193 ASP GLY ASN GLY PHE LYS GLY THR TRP THR GLU ASN GLY SEQRES 12 A 193 GLY GLY ASP VAL SER GLY ARG PHE TYR GLY PRO ALA GLY SEQRES 13 A 193 GLU GLU VAL ALA GLY LYS TYR SER TYR ARG PRO THR ASP SEQRES 14 A 193 ALA GLU LYS GLY GLY PHE GLY VAL PHE ALA GLY LYS LYS SEQRES 15 A 193 GLU GLN ASP LEU GLU HIS HIS HIS HIS HIS HIS SHEET 1 A 2 TYR A 289 LYS A 293 0 SHEET 2 A 2 TYR A 299 VAL A 303 -1 O ARG A 302 N GLY A 290 SHEET 1 B 9 THR A 316 HIS A 325 0 SHEET 2 B 9 THR A 336 ASP A 345 -1 O GLY A 338 N VAL A 323 SHEET 3 B 9 SER A 350 ASP A 356 -1 O ILE A 354 N ALA A 341 SHEET 4 B 9 GLN A 366 ILE A 372 -1 O PHE A 368 N GLY A 353 SHEET 5 B 9 GLY A 376 TRP A 381 -1 O THR A 380 N LYS A 369 SHEET 6 B 9 GLY A 387 PHE A 393 -1 O VAL A 389 N GLY A 379 SHEET 7 B 9 GLU A 400 TYR A 407 -1 O SER A 406 N ASP A 388 SHEET 8 B 9 VAL A 419 LYS A 424 -1 O PHE A 420 N GLY A 403 SHEET 9 B 9 THR A 316 HIS A 325 -1 N ASN A 320 O LYS A 423 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1