HEADER CELL CYCLE 15-JUL-11 2LFV TITLE SOLUTION STRUCTURE OF THE SPOR DOMAIN FROM E. COLI DAMX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DAMX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDURES 338-428; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 MG1655; SOURCE 5 GENE: B3388, DAMX, YHFB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE80L KEYWDS CELL DIVISION, PEPTIDOGLYCAN BINDING DOMAIN, MUREIN BINDING DOMAIN, KEYWDS 2 BACTERIAL CELL DIVISION PROTEIN, RNP FOLD, RNP DOMAIN, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR K.B.WILLIAMS,S.J.R.ARENDS,D.L.POPHAM,C.A.FOWLER,D.S.WEISS REVDAT 3 14-JUN-23 2LFV 1 REMARK SEQADV SHEET REVDAT 2 06-FEB-13 2LFV 1 JRNL REVDAT 1 18-JUL-12 2LFV 0 JRNL AUTH K.B.WILLIAMS,A.YAHASHIRI,S.J.ARENDS,D.L.POPHAM,C.A.FOWLER, JRNL AUTH 2 D.S.WEISS JRNL TITL NUCLEAR MAGNETIC RESONANCE SOLUTION STRUCTURE OF THE JRNL TITL 2 PEPTIDOGLYCAN-BINDING SPOR DOMAIN FROM ESCHERICHIA COLI JRNL TITL 3 DAMX: INSIGHTS INTO SEPTAL LOCALIZATION. JRNL REF BIOCHEMISTRY V. 52 627 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23290046 JRNL DOI 10.1021/BI301609E REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH 2.23 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000102341. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 15N] DAMX SPOR REMARK 210 DOMAIN POLYPEPTIDE, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 POTASSIUM CHLORIDE, 90 % H2O, 10 REMARK 210 % [U-99% 2H] D2O; 0.7 MM [U-99% REMARK 210 13C; U-99% 15N] DAMX SPOR DOMAIN REMARK 210 POLYPEPTIDE, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM POTASSIUM REMARK 210 CHLORIDE, 100 % [U-99% 2H] D2O; REMARK 210 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 DAMX SPOR DOMAIN POLYPEPTIDE, 50 REMARK 210 MM POTASSIUM PHOSPHATE, 50 MM REMARK 210 POTASSIUM CHLORIDE, 90 % H2O, 10 REMARK 210 % [U-99% 2H] D2O; 0.7 MM [U-99% REMARK 210 15N] DAMX SPOR DOMAIN REMARK 210 POLYPEPTIDE, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM POTASSIUM REMARK 210 CHLORIDE, 5 % PEG(C12E5):N- REMARK 210 HEXANOL, 90 % H2O, 10 % [U-99% REMARK 210 2H] D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HMQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HN(CA) REMARK 210 CO; 3D 1H-15N TOCSY; 3D 1H-15N REMARK 210 NOESY; 2D DQF-COSY; 2D 1H-1H REMARK 210 NOESY; 2D 1H-1H TOCSY; 3D C(CO) REMARK 210 NH; 3D H(CCO)NH; (HB)CB(CGCD)HE; REMARK 210 (HB)CB(CGCDCE)HE; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY; 2D 1H-15N REMARK 210 IPAP HSQC; 2D 15N T1; 2D 15N T2; REMARK 210 2D {1H}-15N NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, VNMRJ 2.1B, REMARK 210 CCPN_ANALYSIS 1.0.15, TALOS, REMARK 210 CURVEFIT, X-PLOR NIH 2.23, REMARK 210 PROCHECKNMR 3.5.4 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE SPOR DOMAIN CONSISTS OF RESIDUES 344-428. REMARK 210 STRUCTURE ANALYSIS AND STATISTICS IN THE ACCOMPANYING PUBLICATION REMARK 210 CONSIDER ONLY THIS PORTION OF THE CONSTRUCT. RESIDUES 323-338 ARE REMARK 210 POORLY REMARK 210 CONSTRAINED AND REPRESENT A HIS-TAG PLUS LINKER; THIS REGION REMARK 210 ACCOUNTS FOR ROUGHLY HALF OF THE CLOSE CONTACTS AND RAMACHANDRAN REMARK 210 OUTLIERS NOTED IN THIS FILE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-25 REMARK 470 RES CSSEQI ATOMS REMARK 470 LYS A 428 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 324 -108.58 -75.65 REMARK 500 1 SER A 326 85.14 -166.92 REMARK 500 1 HIS A 327 99.18 -163.19 REMARK 500 1 HIS A 330 150.89 -46.66 REMARK 500 1 HIS A 331 25.10 -169.11 REMARK 500 1 HIS A 332 -115.35 -162.63 REMARK 500 1 ASN A 335 -59.04 -167.96 REMARK 500 1 ASN A 337 -32.71 -158.37 REMARK 500 1 SER A 342 22.74 -78.95 REMARK 500 1 SER A 346 -19.46 -49.08 REMARK 500 1 LEU A 350 -157.92 -69.58 REMARK 500 1 SER A 353 -166.10 -165.55 REMARK 500 1 SER A 355 -174.33 177.58 REMARK 500 1 ASN A 362 -37.60 -37.55 REMARK 500 1 ASN A 372 87.11 53.70 REMARK 500 1 THR A 378 -165.45 -162.67 REMARK 500 1 ARG A 380 92.04 -171.06 REMARK 500 1 ASN A 381 66.95 62.44 REMARK 500 1 ASN A 414 70.81 42.85 REMARK 500 1 PRO A 415 92.76 -47.30 REMARK 500 1 VAL A 423 -14.07 -45.95 REMARK 500 1 GLN A 424 -7.60 -54.23 REMARK 500 2 ARG A 324 -135.09 49.70 REMARK 500 2 SER A 326 22.99 -77.55 REMARK 500 2 HIS A 327 81.00 -173.02 REMARK 500 2 HIS A 330 -100.04 45.66 REMARK 500 2 HIS A 331 83.76 -168.18 REMARK 500 2 HIS A 332 123.31 -170.51 REMARK 500 2 SER A 334 94.52 55.30 REMARK 500 2 ASN A 336 -97.37 -166.48 REMARK 500 2 ASN A 337 -155.11 58.67 REMARK 500 2 SER A 342 26.83 -78.74 REMARK 500 2 LEU A 350 -167.16 -71.19 REMARK 500 2 SER A 355 -172.34 -177.74 REMARK 500 2 SER A 356 50.68 -140.67 REMARK 500 2 TYR A 358 -65.29 -96.45 REMARK 500 2 ALA A 365 -33.86 -39.88 REMARK 500 2 ASN A 372 96.01 57.90 REMARK 500 2 ARG A 380 92.59 -168.88 REMARK 500 2 ASN A 381 70.50 63.44 REMARK 500 2 SER A 395 -169.35 -125.51 REMARK 500 2 GLU A 397 -77.07 -46.33 REMARK 500 2 LYS A 418 83.91 -156.78 REMARK 500 2 PRO A 419 152.05 -48.04 REMARK 500 2 GLN A 424 -14.06 -48.43 REMARK 500 3 ARG A 324 47.96 -74.23 REMARK 500 3 SER A 326 -56.59 -169.02 REMARK 500 3 HIS A 327 -105.42 53.51 REMARK 500 3 HIS A 329 -72.11 -66.59 REMARK 500 3 HIS A 330 -132.16 -171.87 REMARK 500 REMARK 500 THIS ENTRY HAS 510 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED. PROLINE 407 REMOVED FROM REMARK 650 HELIX. REMARK 700 REMARK 700 SHEET DETERMINATION METHOD: AUTHOR BASED UPON 1. THE REGION OF REMARK 700 RAMACHANDRAN SPACE EACH INDIVIDUAL RESIDUE FALLS INTO (PROCHECK REMARK 700 AND TALOS) 2. CHEMICAL SHIFT INDEX VALUES (RE-CONFIRMED WHILE REMARK 700 LOOKING OVER THE BMRB RESPONSE) 3. VISUAL INSPECTION AND 4. REMARK 700 COMPARISON/CONSISTENCY WITH OTHER SPOR DOMAINS AS WELL AS REMARK 700 SEVERAL OTHER RNP FOLD PROTEINS. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17783 RELATED DB: BMRB DBREF 2LFV A 338 428 UNP P11557 DAMX_ECOLI 338 428 SEQADV 2LFV MET A 323 UNP P11557 EXPRESSION TAG SEQADV 2LFV ARG A 324 UNP P11557 EXPRESSION TAG SEQADV 2LFV GLY A 325 UNP P11557 EXPRESSION TAG SEQADV 2LFV SER A 326 UNP P11557 EXPRESSION TAG SEQADV 2LFV HIS A 327 UNP P11557 EXPRESSION TAG SEQADV 2LFV HIS A 328 UNP P11557 EXPRESSION TAG SEQADV 2LFV HIS A 329 UNP P11557 EXPRESSION TAG SEQADV 2LFV HIS A 330 UNP P11557 EXPRESSION TAG SEQADV 2LFV HIS A 331 UNP P11557 EXPRESSION TAG SEQADV 2LFV HIS A 332 UNP P11557 EXPRESSION TAG SEQADV 2LFV GLY A 333 UNP P11557 EXPRESSION TAG SEQADV 2LFV SER A 334 UNP P11557 EXPRESSION TAG SEQADV 2LFV ASN A 335 UNP P11557 EXPRESSION TAG SEQADV 2LFV ASN A 336 UNP P11557 EXPRESSION TAG SEQADV 2LFV ASN A 337 UNP P11557 EXPRESSION TAG SEQRES 1 A 106 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASN SEQRES 2 A 106 ASN ASN GLY SER LEU LYS SER ALA PRO SER SER HIS TYR SEQRES 3 A 106 THR LEU GLN LEU SER SER SER SER ASN TYR ASP ASN LEU SEQRES 4 A 106 ASN GLY TRP ALA LYS LYS GLU ASN LEU LYS ASN TYR VAL SEQRES 5 A 106 VAL TYR GLU THR THR ARG ASN GLY GLN PRO TRP TYR VAL SEQRES 6 A 106 LEU VAL SER GLY VAL TYR ALA SER LYS GLU GLU ALA LYS SEQRES 7 A 106 LYS ALA VAL SER THR LEU PRO ALA ASP VAL GLN ALA LYS SEQRES 8 A 106 ASN PRO TRP ALA LYS PRO LEU ARG GLN VAL GLN ALA ASP SEQRES 9 A 106 LEU LYS HELIX 1 1 ASN A 357 GLU A 368 1 12 HELIX 2 2 SER A 395 LEU A 406 1 12 HELIX 3 3 ALA A 408 ALA A 412 1 5 HELIX 4 4 GLN A 422 ASP A 426 5 5 SHEET 1 A 4 ASN A 372 THR A 378 0 SHEET 2 A 4 TRP A 385 TYR A 393 -1 SHEET 3 A 4 HIS A 347 SER A 355 -1 N LEU A 352 O LEU A 388 SHEET 4 A 4 PRO A 415 PRO A 419 -1 O LYS A 418 N THR A 349 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1