HEADER SIGNALING PROTEIN 18-JUL-11 2LFW TITLE NMR STRUCTURE OF THE PHYRSL-NEPR COMPLEX FROM SPHINGOMONAS SP. FR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYR SIGMA-LIKE DOMAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NEPR ANTI SIGMA FACTOR; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS SP. FR1; SOURCE 3 ORGANISM_TAXID: 907061; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET26BII-PHYRSL; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SPHINGOMONAS SP. FR1; SOURCE 11 ORGANISM_TAXID: 907061; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET26BII-NEPR KEYWDS SIGNAL TRANSDUCTION, RESPONSE REGULATOR, SIGMA FACTOR MIMICRY, ANTI- KEYWDS 2 SIGMA FACTOR, GENERAL STRESS RESPONSE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR S.CAMPAGNE,F.F.DAMBERGER,J.A.VORHOLT,F.H.-T.ALLAIN REVDAT 5 14-JUN-23 2LFW 1 REMARK REVDAT 4 24-JAN-18 2LFW 1 AUTHOR REVDAT 3 06-JUN-12 2LFW 1 JRNL REVDAT 2 09-MAY-12 2LFW 1 JRNL REVDAT 1 25-APR-12 2LFW 0 JRNL AUTH S.CAMPAGNE,F.F.DAMBERGER,A.KACZMARCZYK,A.FRANCEZ-CHARLOT, JRNL AUTH 2 F.H.ALLAIN,J.A.VORHOLT JRNL TITL STRUCTURAL BASIS FOR SIGMA FACTOR MIMICRY IN THE GENERAL JRNL TITL 2 STRESS RESPONSE OF ALPHAPROTEOBACTERIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 E1405 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22550171 JRNL DOI 10.1073/PNAS.1117003109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CARA, AMBER REMARK 3 AUTHORS : BARTELS ET AL. (CARA), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000102342. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.06 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 PHYR SIGMA LIKE DOMAIN, 0.8 MM REMARK 210 NEPR ANTI SIGMA FACTOR, 90% H2O/ REMARK 210 10% D2O; 0.8 MM PHYR SIGMA LIKE REMARK 210 DOMAIN, 0.8 MM [U-100% 13C; U- REMARK 210 100% 15N] NEPR ANTI SIGMA FACTOR, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C HSQC AROMATIC; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 700 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ATNOS_CANDID, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-15 REMARK 470 RES CSSEQI ATOMS REMARK 470 ARG B 62 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 170.29 59.26 REMARK 500 1 TYR A 17 -14.05 -140.39 REMARK 500 1 THR A 22 -19.92 -147.84 REMARK 500 1 ALA A 42 54.56 -154.83 REMARK 500 1 ASP A 79 20.27 -143.06 REMARK 500 1 GLU A 81 11.41 -142.39 REMARK 500 1 THR A 83 -3.04 -147.40 REMARK 500 1 GLU A 84 -31.34 -154.49 REMARK 500 1 LEU A 91 21.99 -140.30 REMARK 500 1 ALA A 92 7.63 -61.40 REMARK 500 1 PRO A 96 1.20 -53.59 REMARK 500 1 MET A 107 -2.70 -143.21 REMARK 500 1 GLN A 140 -37.33 -158.96 REMARK 500 1 THR A 141 -4.78 45.63 REMARK 500 1 ARG A 142 4.15 -161.18 REMARK 500 1 HIS A 154 28.39 -151.32 REMARK 500 1 LYS B 11 11.45 -144.68 REMARK 500 1 ARG B 26 -164.49 50.39 REMARK 500 1 GLU B 41 25.36 -77.62 REMARK 500 1 ASP B 46 -2.21 -147.09 REMARK 500 1 LEU B 55 -11.68 -153.83 REMARK 500 1 LEU B 57 21.84 -150.07 REMARK 500 2 TYR A 17 -8.83 -140.27 REMARK 500 2 THR A 22 -0.30 -148.05 REMARK 500 2 ALA A 42 55.26 -156.41 REMARK 500 2 ARG A 48 16.63 -141.69 REMARK 500 2 GLN A 77 -19.06 58.04 REMARK 500 2 SER A 78 168.72 57.41 REMARK 500 2 ASP A 79 16.26 -149.70 REMARK 500 2 THR A 83 -0.63 -145.93 REMARK 500 2 GLU A 84 -45.92 -149.68 REMARK 500 2 ALA A 92 -9.31 -59.13 REMARK 500 2 PRO A 96 5.26 -54.59 REMARK 500 2 GLU A 108 -21.81 -150.60 REMARK 500 2 GLN A 140 -37.45 -159.71 REMARK 500 2 THR A 141 24.97 43.41 REMARK 500 2 ARG A 142 -5.66 -144.47 REMARK 500 2 ALA A 143 9.36 50.51 REMARK 500 2 LEU A 146 -165.97 46.48 REMARK 500 2 VAL A 147 53.12 -140.42 REMARK 500 2 HIS A 152 -177.08 57.00 REMARK 500 2 HIS A 156 8.66 -150.17 REMARK 500 2 LEU B 2 31.46 -141.44 REMARK 500 2 ASN B 7 19.39 52.27 REMARK 500 2 LYS B 8 19.10 -142.90 REMARK 500 2 SER B 17 55.27 -153.04 REMARK 500 2 ASP B 27 12.07 -145.82 REMARK 500 2 ASP B 46 -9.51 -59.85 REMARK 500 2 LEU B 59 -6.97 -146.55 REMARK 500 3 SER A 2 177.54 60.53 REMARK 500 REMARK 500 THIS ENTRY HAS 393 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17784 RELATED DB: BMRB DBREF 2LFW A 1 157 PDB 2LFW 2LFW 1 157 DBREF 2LFW B 1 62 PDB 2LFW 2LFW 1 62 SEQRES 1 A 157 MET SER LEU GLY GLN GLN LEU ALA PRO HIS LEU PRO PHE SEQRES 2 A 157 LEU ARG ARG TYR GLY ARG ALA LEU THR GLY SER GLN ASN SEQRES 3 A 157 GLN GLY ASP LYS TYR VAL ARG ALA THR LEU GLU ALA ILE SEQRES 4 A 157 VAL ALA ALA PRO ASP GLN PHE PRO ARG ASP VAL ASP PRO SEQRES 5 A 157 ARG LEU GLY LEU TYR ARG MET PHE GLN GLY ILE TRP ALA SEQRES 6 A 157 SER ALA ASN ALA ASP GLY GLU ALA GLN THR SER GLN SER SEQRES 7 A 157 ASP ALA GLU GLY THR GLU ALA VAL ALA ARG ALA ARG LEU SEQRES 8 A 157 ALA ARG MET THR PRO LEU SER ARG GLN ALA LEU LEU LEU SEQRES 9 A 157 THR ALA MET GLU GLY PHE SER PRO GLU ASP ALA ALA TYR SEQRES 10 A 157 LEU ILE GLU VAL ASP THR SER GLU VAL GLU THR LEU VAL SEQRES 11 A 157 THR GLU ALA LEU ALA GLU ILE GLU LYS GLN THR ARG ALA SEQRES 12 A 157 LEU GLU LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HIS SEQRES 13 A 157 HIS SEQRES 1 B 62 MET LEU ASP LEU PRO GLY ASN LYS ASP LYS LYS ALA SER SEQRES 2 B 62 SER LYS LYS SER PRO ALA LYS VAL GLN SER LYS ASP ARG SEQRES 3 B 62 ASP MET GLY ALA ALA LEU ARG SER ALA TYR GLN LYS THR SEQRES 4 B 62 ILE GLU GLU GLN VAL PRO ASP GLU MET LEU ASP LEU LEU SEQRES 5 B 62 ASN LYS LEU ALA LEU GLU LEU VAL PRO ARG HELIX 1 1 SER A 2 ARG A 15 5 14 HELIX 2 2 TYR A 17 LEU A 21 5 5 HELIX 3 3 SER A 24 ALA A 38 1 15 HELIX 4 4 ALA A 42 PHE A 46 5 5 HELIX 5 5 ARG A 53 ASN A 68 1 16 HELIX 6 6 LEU A 97 LEU A 103 1 7 HELIX 7 7 SER A 111 LEU A 118 1 8 HELIX 8 8 ASP A 122 LYS A 139 1 18 HELIX 9 9 ASP B 27 LYS B 38 1 12 HELIX 10 10 MET B 48 LEU B 52 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1