HEADER HYDROLASE 27-JUL-11 2LGJ TITLE SOLUTION STRUCTURE OF MSPTH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-TRNA HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PTH, MSPTH; COMPND 5 EC: 3.1.1.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: PTH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETNH6 KEYWDS MSPTH, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.YADAV,P.PATHAK,S.PULAVARTI,A.JAIN,A.KUMAR,V.SHUKLA,A.ARORA REVDAT 1 01-AUG-12 2LGJ 0 JRNL AUTH R.YADAV,P.PATHAK,S.PULAVARTI,A.JAIN,A.KUMAR,V.SHUKLA,A.ARORA JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF PEPTIDYL T-RNA JRNL TITL 2 HYDROLASE FROM MYCOBACTERIUM SMEGMATIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-AUG-11. REMARK 100 THE RCSB ID CODE IS RCSB102365. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM [U-98% 15N] MSPTH-1, 20MM REMARK 210 SODIUM PHOSPHATE-2, 50MM SODIUM REMARK 210 CHLORIDE-3, 1MM DTT-4, 1MM AEBSF REMARK 210 PROTEASE INHIBITOR-5, 1% SODIUM REMARK 210 AZIDE-6, 93% H2O/7% D2O; 1MM [U- REMARK 210 98% 13C; U-98% 15N] MSPTH-7, 20MM REMARK 210 SODIUM PHOSPHATE-8, 50MM SODIUM REMARK 210 CHLORIDE-9, 1MM DTT-10, 1MM AEBSF REMARK 210 PROTEASE INHIBITOR-11, 1% SODIUM REMARK 210 AZIDE-12, 93% H2O/7% D2O; 0.9MM REMARK 210 [U-98% 13C; U-98% 15N] MSPTH-13, REMARK 210 20MM SODIUM PHOSPHATE-14, 50MM REMARK 210 SODIUM CHLORIDE-15, 1MM DTT-16, REMARK 210 1MM AEBSF PROTEASE INHIBITOR-17, REMARK 210 1% SODIUM AZIDE-18, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D H(CCO)NH; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 1H-13C NOESY REMARK 210 AROMATIC; HB(CBCGCE)HE; REMARK 210 HB(CBCGCD)HD REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRDRAW, CARA 1.8.4, REMARK 210 TALOS +, CYANA 3.0 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 107 OE2 GLU A 112 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 77.23 63.28 REMARK 500 1 THR A 20 -169.85 -103.44 REMARK 500 1 HIS A 43 77.10 -116.95 REMARK 500 1 LYS A 44 105.28 -55.56 REMARK 500 1 LYS A 45 -88.99 168.29 REMARK 500 1 ALA A 56 -32.44 71.05 REMARK 500 1 GLU A 112 -82.69 -143.53 REMARK 500 1 LYS A 128 -106.51 -96.72 REMARK 500 1 ASN A 129 -10.33 67.56 REMARK 500 1 PRO A 146 -19.39 -47.65 REMARK 500 1 GLU A 152 107.64 -160.89 REMARK 500 1 PHE A 154 35.88 -146.47 REMARK 500 1 GLN A 179 -67.72 -129.11 REMARK 500 2 ALA A 2 80.11 63.46 REMARK 500 2 THR A 20 -169.38 -102.71 REMARK 500 2 LYS A 44 83.56 -68.83 REMARK 500 2 LYS A 45 -95.13 -105.19 REMARK 500 2 ALA A 56 -57.85 67.28 REMARK 500 2 GLN A 179 -77.09 -115.57 REMARK 500 3 ASN A 23 33.27 -85.08 REMARK 500 3 LYS A 45 -47.55 76.66 REMARK 500 3 ALA A 56 -53.01 72.28 REMARK 500 3 TYR A 68 -169.38 -78.05 REMARK 500 3 LYS A 128 -115.25 -125.22 REMARK 500 3 GLN A 179 -65.04 -139.22 REMARK 500 4 LYS A 45 -41.73 80.26 REMARK 500 4 ALA A 56 -52.44 70.18 REMARK 500 4 HIS A 115 -24.59 70.52 REMARK 500 4 ASN A 129 -13.88 66.11 REMARK 500 4 PHE A 130 -84.50 175.37 REMARK 500 4 PRO A 146 -9.59 -58.86 REMARK 500 4 GLN A 179 -40.58 -144.24 REMARK 500 5 PRO A 15 -159.43 -80.37 REMARK 500 5 THR A 16 -70.82 70.64 REMARK 500 5 LYS A 44 96.80 -66.55 REMARK 500 5 LYS A 45 -55.80 167.78 REMARK 500 5 SER A 84 72.77 59.98 REMARK 500 5 ASN A 129 79.14 66.09 REMARK 500 5 HIS A 131 87.61 -68.63 REMARK 500 5 GLN A 179 -67.56 -133.22 REMARK 500 6 ALA A 2 42.22 -158.41 REMARK 500 6 ASN A 12 105.32 -163.08 REMARK 500 6 PHE A 40 -158.10 -107.86 REMARK 500 6 HIS A 43 75.67 -102.25 REMARK 500 6 LYS A 45 -90.93 -134.76 REMARK 500 6 ALA A 56 -46.46 70.44 REMARK 500 6 GLU A 112 149.73 -171.77 REMARK 500 6 PHE A 130 -130.72 63.52 REMARK 500 6 HIS A 131 85.95 34.44 REMARK 500 6 ASN A 153 -173.92 67.31 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17811 RELATED DB: BMRB DBREF 2LGJ A 1 191 UNP A0R3D3 PTH_MYCS2 1 191 SEQRES 1 A 191 MET ALA GLU PRO LEU LEU VAL VAL GLY LEU GLY ASN PRO SEQRES 2 A 191 GLY PRO THR TYR ALA LYS THR ARG HIS ASN LEU GLY PHE SEQRES 3 A 191 MET VAL ALA ASP VAL LEU ALA GLY ARG ILE GLY SER ALA SEQRES 4 A 191 PHE LYS VAL HIS LYS LYS SER GLY ALA GLU VAL VAL THR SEQRES 5 A 191 GLY ARG LEU ALA GLY THR SER VAL VAL LEU ALA LYS PRO SEQRES 6 A 191 ARG CYS TYR MET ASN GLU SER GLY ARG GLN VAL GLY PRO SEQRES 7 A 191 LEU ALA LYS PHE TYR SER VAL PRO PRO GLN GLN ILE VAL SEQRES 8 A 191 VAL ILE HIS ASP GLU LEU ASP ILE ASP PHE GLY ARG ILE SEQRES 9 A 191 ARG LEU LYS LEU GLY GLY GLY GLU GLY GLY HIS ASN GLY SEQRES 10 A 191 LEU ARG SER VAL ALA SER ALA LEU GLY THR LYS ASN PHE SEQRES 11 A 191 HIS ARG VAL ARG ILE GLY VAL GLY ARG PRO PRO GLY ARG SEQRES 12 A 191 LYS ASP PRO ALA ALA PHE VAL LEU GLU ASN PHE THR ALA SEQRES 13 A 191 ALA GLU ARG ALA GLU VAL PRO THR ILE VAL GLU GLN ALA SEQRES 14 A 191 ALA ASP ALA THR GLU LEU LEU ILE ALA GLN GLY LEU GLU SEQRES 15 A 191 PRO ALA GLN ASN THR VAL HIS ALA TRP HELIX 1 1 THR A 16 HIS A 22 5 7 HELIX 2 2 ASN A 23 GLY A 37 1 15 HELIX 3 3 TYR A 68 TYR A 83 1 16 HELIX 4 4 GLY A 114 GLY A 126 1 13 HELIX 5 5 ASP A 145 VAL A 150 1 6 HELIX 6 6 ALA A 156 GLU A 161 1 6 HELIX 7 7 GLU A 161 GLN A 179 1 19 HELIX 8 8 GLY A 180 TRP A 191 1 12 SHEET 1 A 7 LYS A 41 HIS A 43 0 SHEET 2 A 7 GLY A 47 LEU A 55 -1 O VAL A 50 N LYS A 41 SHEET 3 A 7 THR A 58 LYS A 64 -1 O VAL A 60 N GLY A 53 SHEET 4 A 7 LEU A 6 GLY A 9 1 N VAL A 7 O VAL A 61 SHEET 5 A 7 VAL A 91 GLU A 96 1 O VAL A 91 N VAL A 8 SHEET 6 A 7 HIS A 131 GLY A 136 1 O ILE A 135 N HIS A 94 SHEET 7 A 7 ILE A 104 LEU A 108 -1 N ARG A 105 O ARG A 134 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1