HEADER HYDROLASE 01-AUG-11 2LGR TITLE SOLUTION STRUCTURE OF HUMAN PROTEIN C6ORF130, A PUTATIVE MACRO DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN C6ORF130; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BC011709.2, C6ORF130; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PEU-HIS KEYWDS MACRO DOMAIN, A1PP DOMAIN, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, PSI, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, KEYWDS 3 DEACYLASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.F.VOLKMAN,B.L.LYTLE,F.C.PETERSON,CENTER FOR EUKARYOTIC STRUCTURAL AUTHOR 2 GENOMICS (CESG) REVDAT 4 15-MAY-24 2LGR 1 REMARK REVDAT 3 14-JUN-23 2LGR 1 REMARK SEQADV REVDAT 2 26-OCT-11 2LGR 1 JRNL REVDAT 1 17-AUG-11 2LGR 0 SPRSDE 17-AUG-11 2LGR 2JYC JRNL AUTH F.C.PETERSON,D.CHEN,B.L.LYTLE,M.N.ROSSI,I.AHEL,J.M.DENU, JRNL AUTH 2 B.F.VOLKMAN JRNL TITL ORPHAN MACRODOMAIN PROTEIN (HUMAN C6ORF130) IS AN JRNL TITL 2 O-ACYL-ADP-RIBOSE DEACYLASE: SOLUTION STRUCTURE AND JRNL TITL 3 CATALYTIC PROPERTIES. JRNL REF J.BIOL.CHEM. V. 286 35955 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21849506 JRNL DOI 10.1074/JBC.M111.276238 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.23, CYANA REMARK 3 AUTHORS : REMARK 3 SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. (XPLOR-NIH), REMARK 3 SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTOMATED METHODS WERE USED FOR REMARK 3 BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. REMARK 3 FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT REMARK 3 SOLVENT. STRUCTURES ARE BASED ON A TOTAL OF 1971 NOE CONSTRAINTS REMARK 3 (758 INTRA, 418 SEQUENTIAL, 238 MEDIUM AND 557 LONG RANGE REMARK 3 CONSTRAINTS) AND 180 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS., REMARK 3 STRUCTURES ARE BASED ON A TOTAL OF 1971 NOE CONSTRAINTS (758 REMARK 3 INTRA, 418 SEQUENTIAL, 238 MEDIUM AND 557 LONG RANGE CONSTRAINTS) REMARK 3 AND 180 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 2LGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102373. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.55 MM [U-100% 13C; U-100% 15N] REMARK 210 C6ORF130, 20 MM BISTRIS, 200 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 7 % REMARK 210 [U-100% 2H] D2O, 93 % H2O, 93% REMARK 210 H2O, 7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C-SEPARATED_NOESY (AROMATIC); 3D_13C-F1- REMARK 210 FILTERED_13C-F3_SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, NMRPIPE 2006, XEASY REMARK 210 1.3, GARANT 2.1, CYANA 3.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LEU A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 140 HG1 THR A 143 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 9 -150.77 -108.81 REMARK 500 1 GLU A 10 92.93 67.81 REMARK 500 1 GLN A 62 80.95 53.23 REMARK 500 1 ARG A 73 -70.43 -110.30 REMARK 500 1 ASP A 74 130.49 176.85 REMARK 500 1 LYS A 85 -78.12 -66.09 REMARK 500 1 PRO A 118 -157.09 -88.15 REMARK 500 1 ARG A 119 92.45 -68.86 REMARK 500 1 CYS A 122 -179.44 -174.60 REMARK 500 2 SER A 3 29.48 -153.70 REMARK 500 2 ARG A 13 -84.65 -125.76 REMARK 500 2 GLN A 62 82.06 64.26 REMARK 500 2 ARG A 73 -67.97 -107.52 REMARK 500 2 ASP A 74 124.98 -175.79 REMARK 500 2 THR A 83 -61.87 -93.36 REMARK 500 2 PRO A 118 -155.68 -93.74 REMARK 500 2 LEU A 127 -116.75 34.21 REMARK 500 2 GLN A 128 117.22 170.01 REMARK 500 2 THR A 143 -169.13 -105.81 REMARK 500 3 MET A 40 -162.91 58.75 REMARK 500 3 GLN A 62 79.79 39.66 REMARK 500 3 ARG A 73 -65.98 -101.54 REMARK 500 3 ASP A 74 -76.94 -144.14 REMARK 500 3 CYS A 122 19.31 53.75 REMARK 500 3 ALA A 142 -20.38 83.51 REMARK 500 4 LEU A 5 102.60 58.95 REMARK 500 4 GLU A 7 82.09 39.58 REMARK 500 4 ASP A 8 128.75 162.55 REMARK 500 4 PRO A 25 155.36 -48.71 REMARK 500 4 ASP A 74 101.39 58.10 REMARK 500 4 THR A 113 -6.43 -140.29 REMARK 500 4 ARG A 119 142.66 178.11 REMARK 500 4 CYS A 122 -83.62 174.30 REMARK 500 5 GLU A 10 -67.77 -141.80 REMARK 500 5 SER A 12 -157.23 -152.70 REMARK 500 5 MET A 40 -97.66 59.82 REMARK 500 5 ASP A 74 107.70 -40.15 REMARK 500 6 SER A 4 99.37 -171.11 REMARK 500 6 ARG A 13 -72.54 -112.68 REMARK 500 6 CYS A 38 17.53 56.94 REMARK 500 6 GLN A 62 79.51 79.53 REMARK 500 6 ASP A 74 96.96 -60.07 REMARK 500 6 ILE A 120 98.44 -63.02 REMARK 500 6 CYS A 122 -67.72 64.00 REMARK 500 7 MET A 40 84.91 40.29 REMARK 500 7 SER A 65 106.12 -57.79 REMARK 500 7 PRO A 118 -151.06 -93.38 REMARK 500 7 CYS A 122 -177.62 -64.36 REMARK 500 8 ALA A 2 105.82 -160.88 REMARK 500 8 GLU A 10 -75.82 -146.25 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 76 0.09 SIDE CHAIN REMARK 500 10 ARG A 76 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15593 RELATED DB: BMRB REMARK 900 RELATED ID: 2L8R RELATED DB: PDB REMARK 900 RELATED ID: GO.36728 RELATED DB: TARGETDB DBREF 2LGR A 2 152 UNP Q9Y530 CF130_HUMAN 2 152 SEQADV 2LGR GLY A -7 UNP Q9Y530 EXPRESSION TAG SEQADV 2LGR HIS A -6 UNP Q9Y530 EXPRESSION TAG SEQADV 2LGR HIS A -5 UNP Q9Y530 EXPRESSION TAG SEQADV 2LGR HIS A -4 UNP Q9Y530 EXPRESSION TAG SEQADV 2LGR HIS A -3 UNP Q9Y530 EXPRESSION TAG SEQADV 2LGR HIS A -2 UNP Q9Y530 EXPRESSION TAG SEQADV 2LGR HIS A -1 UNP Q9Y530 EXPRESSION TAG SEQADV 2LGR LEU A 0 UNP Q9Y530 EXPRESSION TAG SEQADV 2LGR GLU A 1 UNP Q9Y530 EXPRESSION TAG SEQRES 1 A 160 GLY HIS HIS HIS HIS HIS HIS LEU GLU ALA SER SER LEU SEQRES 2 A 160 ASN GLU ASP PRO GLU GLY SER ARG ILE THR TYR VAL LYS SEQRES 3 A 160 GLY ASP LEU PHE ALA CYS PRO LYS THR ASP SER LEU ALA SEQRES 4 A 160 HIS CYS ILE SER GLU ASP CYS ARG MET GLY ALA GLY ILE SEQRES 5 A 160 ALA VAL LEU PHE LYS LYS LYS PHE GLY GLY VAL GLN GLU SEQRES 6 A 160 LEU LEU ASN GLN GLN LYS LYS SER GLY GLU VAL ALA VAL SEQRES 7 A 160 LEU LYS ARG ASP GLY ARG TYR ILE TYR TYR LEU ILE THR SEQRES 8 A 160 LYS LYS ARG ALA SER HIS LYS PRO THR TYR GLU ASN LEU SEQRES 9 A 160 GLN LYS SER LEU GLU ALA MET LYS SER HIS CYS LEU LYS SEQRES 10 A 160 ASN GLY VAL THR ASP LEU SER MET PRO ARG ILE GLY CYS SEQRES 11 A 160 GLY LEU ASP ARG LEU GLN TRP GLU ASN VAL SER ALA MET SEQRES 12 A 160 ILE GLU GLU VAL PHE GLU ALA THR ASP ILE LYS ILE THR SEQRES 13 A 160 VAL TYR THR LEU HELIX 1 1 ASP A 20 CYS A 24 5 5 HELIX 2 2 ILE A 44 PHE A 52 1 9 HELIX 3 3 GLY A 54 ASN A 60 1 7 HELIX 4 4 THR A 92 GLY A 111 1 20 HELIX 5 5 GLN A 128 GLU A 141 1 14 SHEET 1 A 6 ILE A 14 VAL A 17 0 SHEET 2 A 6 LYS A 146 TYR A 150 1 O VAL A 149 N VAL A 17 SHEET 3 A 6 ASP A 114 MET A 117 1 N MET A 117 O THR A 148 SHEET 4 A 6 SER A 29 SER A 35 1 N SER A 29 O ASP A 114 SHEET 5 A 6 TYR A 77 LYS A 84 1 O TYR A 79 N LEU A 30 SHEET 6 A 6 VAL A 68 LYS A 72 -1 N ALA A 69 O TYR A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1