HEADER LIGASE 02-AUG-11 2LGV TITLE RBX1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RBX1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 12-108; COMPND 5 SYNONYM: PROTEIN ZYP, RING FINGER PROTEIN 75, RING-BOX PROTEIN 1, COMPND 6 RBX1, REGULATOR OF CULLINS 1; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBX1, RNF75, ROC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS ROC1, RING, ZN-BINDING, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.E.SPRATT,G.S.SHAW REVDAT 4 15-MAY-24 2LGV 1 REMARK REVDAT 3 14-JUN-23 2LGV 1 REMARK SEQADV LINK REVDAT 2 06-JUN-12 2LGV 1 JRNL REVDAT 1 28-MAR-12 2LGV 0 JRNL AUTH D.E.SPRATT,K.WU,J.KOVACEV,Z.Q.PAN,G.S.SHAW JRNL TITL SELECTIVE RECRUITMENT OF AN E2~UBIQUITIN COMPLEX BY AN E3 JRNL TITL 2 UBIQUITIN LIGASE. JRNL REF J.BIOL.CHEM. V. 287 17374 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22433864 JRNL DOI 10.1074/JBC.M112.353748 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ VARIAN VNMRJ 2.2D, X-PLOR NIH, PROCHECK REMARK 3 AUTHORS : VARIAN (VNMRJ), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH), LASKOWSKI, MACARTHUR, SMITH, REMARK 3 JONES, HUTCHINSON, MORRIS, MOSS AND THO (PROCHECK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BASED ON MODIFIED RECOORD SCRIPTS REMARK 4 REMARK 4 2LGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102376. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 700 REMARK 210 UM [U-98% 15N] PROTEIN, 90% H2O/ REMARK 210 10% D2O; 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 1 MM DTT, REMARK 210 700 UM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O; 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 700 UM [U-98% REMARK 210 13C; U-98% 15N] PROTEIN, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HNHA; 3D C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2009.015.15.35, NMRDRAW REMARK 210 VER 5.0 REV 2009.244.15.09, REMARK 210 NMRVIEW 8.0.RC47 WITH JAVA 1.6.0_ REMARK 210 26, CYANA 2.1, TALOS TALOSPLUS REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 25 98.87 -62.09 REMARK 500 1 ARG A 46 53.20 70.77 REMARK 500 1 ASP A 51 -161.21 -121.08 REMARK 500 1 ILE A 54 -83.86 -47.13 REMARK 500 1 GLN A 60 84.51 78.42 REMARK 500 1 ALA A 63 -70.67 -175.67 REMARK 500 1 TYR A 106 -37.21 -133.71 REMARK 500 2 ASN A 47 -169.35 -100.98 REMARK 500 2 ILE A 54 -83.08 -37.11 REMARK 500 2 GLN A 60 82.43 51.06 REMARK 500 2 CYS A 68 -79.73 -55.87 REMARK 500 3 GLU A 23 -170.12 62.66 REMARK 500 3 ASP A 51 -165.67 -172.26 REMARK 500 3 ILE A 54 -72.27 -41.27 REMARK 500 3 ALA A 61 93.21 -60.00 REMARK 500 3 THR A 69 136.60 -178.64 REMARK 500 3 GLN A 104 -75.80 -98.72 REMARK 500 4 PHE A 22 75.00 67.37 REMARK 500 4 ALA A 31 -155.28 -129.23 REMARK 500 4 ARG A 46 53.54 71.57 REMARK 500 4 ILE A 54 -79.24 -50.28 REMARK 500 4 GLN A 60 82.98 49.99 REMARK 500 4 ALA A 63 -164.00 -176.94 REMARK 500 4 CYS A 68 -100.64 -70.01 REMARK 500 4 LYS A 105 136.15 -171.97 REMARK 500 5 ALA A 29 106.02 168.00 REMARK 500 5 ALA A 31 -73.91 -139.03 REMARK 500 5 GLN A 32 -46.08 67.68 REMARK 500 5 VAL A 39 26.58 -79.07 REMARK 500 5 ILE A 54 -83.31 -40.04 REMARK 500 5 GLN A 60 66.91 67.77 REMARK 500 5 THR A 69 142.95 175.33 REMARK 500 5 CYS A 75 23.71 -79.51 REMARK 500 5 GLN A 104 -79.14 -101.21 REMARK 500 6 ARG A 46 18.28 84.37 REMARK 500 6 ASP A 51 -171.10 -173.35 REMARK 500 6 ILE A 54 -89.11 -47.29 REMARK 500 6 GLN A 60 67.35 32.07 REMARK 500 6 ALA A 61 -165.22 -100.38 REMARK 500 6 CYS A 68 -80.20 -64.45 REMARK 500 6 CYS A 75 31.64 -81.91 REMARK 500 7 SER A 15 48.58 -102.07 REMARK 500 7 ASN A 28 -72.78 -53.68 REMARK 500 7 GLN A 32 -57.32 69.07 REMARK 500 7 ARG A 46 60.98 76.27 REMARK 500 7 GLN A 60 65.38 68.75 REMARK 500 7 ALA A 63 -96.58 -179.45 REMARK 500 7 CYS A 68 -83.70 -54.11 REMARK 500 7 GLN A 104 -90.66 -94.11 REMARK 500 8 LYS A 26 -166.14 -122.18 REMARK 500 REMARK 500 THIS ENTRY HAS 139 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 109 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 42 SG REMARK 620 2 CYS A 45 SG 104.4 REMARK 620 3 HIS A 80 ND1 106.5 105.9 REMARK 620 4 CYS A 83 SG 108.2 114.7 116.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 110 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 53 SG REMARK 620 2 CYS A 56 SG 105.0 REMARK 620 3 CYS A 68 SG 88.8 114.0 REMARK 620 4 HIS A 82 ND1 90.6 103.2 141.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 111 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 75 SG REMARK 620 2 HIS A 77 ND1 101.7 REMARK 620 3 CYS A 94 SG 109.4 101.7 REMARK 620 4 ASP A 97 OD1 137.7 80.6 111.4 REMARK 620 5 ASP A 97 OD2 127.1 96.7 114.7 17.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 111 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LDJ RELATED DB: PDB REMARK 900 CUL1-RBX1-SKP1-F BOXSKP2 SCF REMARK 900 RELATED ID: 1LDK RELATED DB: PDB REMARK 900 CUL1-RBX1-SKP1-F BOXSKP2 SCF REMARK 900 RELATED ID: 1U6G RELATED DB: PDB REMARK 900 CAND1-RBX1-CULLIN1 REMARK 900 RELATED ID: 2HYE RELATED DB: PDB REMARK 900 DDB1-CUL4A-RBX1-SV5V REMARK 900 RELATED ID: 3DQV RELATED DB: PDB REMARK 900 NEDD8-CUL5-RBX1 REMARK 900 RELATED ID: 3DPL RELATED DB: PDB REMARK 900 NEDD8-CUL5-RBX1 REMARK 900 RELATED ID: 3RTR RELATED DB: PDB REMARK 900 CUL1-RBX1 REMARK 900 RELATED ID: 17824 RELATED DB: BMRB DBREF 2LGV A 12 108 UNP P62877 RBX1_HUMAN 12 108 SEQADV 2LGV GLY A 9 UNP P62877 EXPRESSION TAG SEQADV 2LGV GLY A 10 UNP P62877 EXPRESSION TAG SEQADV 2LGV GLY A 11 UNP P62877 EXPRESSION TAG SEQADV 2LGV SER A 27 UNP P62877 TRP 27 ENGINEERED MUTATION SEQADV 2LGV SER A 30 UNP P62877 VAL 30 ENGINEERED MUTATION SEQADV 2LGV GLN A 32 UNP P62877 LEU 32 ENGINEERED MUTATION SEQADV 2LGV SER A 33 UNP P62877 TRP 33 ENGINEERED MUTATION SEQRES 1 A 100 GLY GLY GLY GLY THR ASN SER GLY ALA GLY LYS LYS ARG SEQRES 2 A 100 PHE GLU VAL LYS LYS SER ASN ALA SER ALA GLN SER ALA SEQRES 3 A 100 TRP ASP ILE VAL VAL ASP ASN CYS ALA ILE CYS ARG ASN SEQRES 4 A 100 HIS ILE MET ASP LEU CYS ILE GLU CYS GLN ALA ASN GLN SEQRES 5 A 100 ALA SER ALA THR SER GLU GLU CYS THR VAL ALA TRP GLY SEQRES 6 A 100 VAL CYS ASN HIS ALA PHE HIS PHE HIS CYS ILE SER ARG SEQRES 7 A 100 TRP LEU LYS THR ARG GLN VAL CYS PRO LEU ASP ASN ARG SEQRES 8 A 100 GLU TRP GLU PHE GLN LYS TYR GLY HIS HET ZN A 109 1 HET ZN A 110 1 HET ZN A 111 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 CYS A 53 GLN A 60 1 8 HELIX 2 2 HIS A 80 ARG A 91 1 12 SHEET 1 A 2 ASN A 41 CYS A 42 0 SHEET 2 A 2 ASN A 47 HIS A 48 -1 O ASN A 47 N CYS A 42 SHEET 1 B 3 HIS A 77 PHE A 79 0 SHEET 2 B 3 ALA A 71 GLY A 73 -1 N GLY A 73 O HIS A 77 SHEET 3 B 3 PHE A 103 LYS A 105 -1 O LYS A 105 N TRP A 72 LINK SG CYS A 42 ZN ZN A 109 1555 1555 2.26 LINK SG CYS A 45 ZN ZN A 109 1555 1555 2.14 LINK SG CYS A 53 ZN ZN A 110 1555 1555 2.52 LINK SG CYS A 56 ZN ZN A 110 1555 1555 2.19 LINK SG CYS A 68 ZN ZN A 110 1555 1555 2.26 LINK SG CYS A 75 ZN ZN A 111 1555 1555 2.16 LINK ND1 HIS A 77 ZN ZN A 111 1555 1555 2.32 LINK ND1 HIS A 80 ZN ZN A 109 1555 1555 2.12 LINK ND1 HIS A 82 ZN ZN A 110 1555 1555 2.24 LINK SG CYS A 83 ZN ZN A 109 1555 1555 2.12 LINK SG CYS A 94 ZN ZN A 111 1555 1555 2.19 LINK OD1 ASP A 97 ZN ZN A 111 1555 1555 3.91 LINK OD2 ASP A 97 ZN ZN A 111 1555 1555 1.88 SITE 1 AC1 4 CYS A 42 CYS A 45 HIS A 80 CYS A 83 SITE 1 AC2 4 CYS A 53 CYS A 56 CYS A 68 HIS A 82 SITE 1 AC3 4 CYS A 75 HIS A 77 CYS A 94 ASP A 97 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 467 1506 CONECT 506 1506 CONECT 638 1507 CONECT 682 1507 CONECT 836 1507 CONECT 933 1508 CONECT 958 1508 CONECT 1005 1506 CONECT 1042 1507 CONECT 1058 1506 CONECT 1258 1508 CONECT 1302 1508 CONECT 1303 1508 CONECT 1506 467 506 1005 1058 CONECT 1507 638 682 836 1042 CONECT 1508 933 958 1258 1302 CONECT 1508 1303 MASTER 226 0 3 2 5 0 3 6 783 1 17 8 END