HEADER CELL ADHESION 03-AUG-11 2LGX TITLE NMR STRUCTURE FOR KINDLE-2 N-TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERMITIN FAMILY HOMOLOG 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1-105; COMPND 5 SYNONYM: KINDLIN-2, MITOGEN-INDUCIBLE GENE 2 PROTEIN, MIG-2, COMPND 6 PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY C MEMBER 1, PH DOMAIN- COMPND 7 CONTAINING FAMILY C MEMBER 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FERMT2, KIND2, MIG2, PLEKHC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGST-1 KEYWDS KINDLIN, MEMBRANE, INTEGRIN ACTIVATION, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.D.PERERA,Y.MA,J.YANG,J.HIRBAWI,E.F.PLOW,J.QIN REVDAT 3 15-MAY-24 2LGX 1 REMARK REVDAT 2 14-JUN-23 2LGX 1 REMARK SEQADV REVDAT 1 30-NOV-11 2LGX 0 JRNL AUTH H.D.PERERA,Y.Q.MA,J.YANG,J.HIRBAWI,E.F.PLOW,J.QIN JRNL TITL MEMBRANE BINDING OF THE N-TERMINAL UBIQUITIN-LIKE DOMAIN OF JRNL TITL 2 KINDLIN-2 IS CRUCIAL FOR ITS REGULATION OF INTEGRIN JRNL TITL 3 ACTIVATION. JRNL REF STRUCTURE V. 19 1664 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 22078565 JRNL DOI 10.1016/J.STR.2011.08.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102378. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 50 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 0.05 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; 1 REMARK 210 MM PROTEIN, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.1 MM [U-100% REMARK 210 15N] PROTEIN, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D H(CCO)NH; 3D C(CCO)NH; REMARK 210 3D HCCH-TOCSY; 3D 13C-15N NOESY; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, X-PLOR NIH, NMRVIEW, REMARK 210 TALOS, PROCHECK, PASA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 ALA A -5 REMARK 465 MET A -4 REMARK 465 PRO A -3 REMARK 465 ASP A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 GLN A 95 REMARK 465 HIS A 96 REMARK 465 LYS A 97 REMARK 465 LEU A 98 REMARK 465 LEU A 99 REMARK 465 ARG A 100 REMARK 465 LEU A 101 REMARK 465 GLN A 102 REMARK 465 LEU A 103 REMARK 465 PRO A 104 REMARK 465 ASN A 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 23 H PHE A 92 1.26 REMARK 500 O MET A 45 H VAL A 49 1.40 REMARK 500 O LEU A 46 H GLU A 50 1.44 REMARK 500 O GLY A 43 H LYS A 47 1.56 REMARK 500 O HIS A 40 H GLY A 43 1.59 REMARK 500 O HIS A 23 N PHE A 92 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 82.34 179.30 REMARK 500 1 LEU A 3 -91.92 29.75 REMARK 500 1 ASP A 4 -83.36 -172.05 REMARK 500 1 ILE A 6 -18.78 -42.53 REMARK 500 1 PRO A 9 2.68 -51.72 REMARK 500 1 CYS A 12 -90.94 -55.91 REMARK 500 1 ALA A 14 -108.80 -59.74 REMARK 500 1 ASP A 26 -16.02 67.78 REMARK 500 1 LEU A 52 -172.11 -59.58 REMARK 500 1 ASP A 53 -3.24 -156.54 REMARK 500 1 VAL A 54 25.54 -75.90 REMARK 500 1 LYS A 55 79.82 53.37 REMARK 500 1 TRP A 58 -79.89 -95.96 REMARK 500 1 THR A 70 -161.13 -104.37 REMARK 500 1 LEU A 73 -70.10 -112.12 REMARK 500 1 TRP A 77 67.05 -114.10 REMARK 500 1 THR A 78 164.48 -46.82 REMARK 500 1 GLN A 85 -157.09 -126.97 REMARK 500 2 ALA A 2 91.45 -174.29 REMARK 500 2 LEU A 3 -73.04 -56.87 REMARK 500 2 ASP A 4 6.65 54.73 REMARK 500 2 PRO A 9 5.17 -55.48 REMARK 500 2 CYS A 12 -74.03 -52.93 REMARK 500 2 ALA A 14 -103.31 50.08 REMARK 500 2 ASP A 15 162.21 56.69 REMARK 500 2 ASP A 26 -14.67 68.22 REMARK 500 2 LEU A 52 -170.70 -56.95 REMARK 500 2 ASP A 53 40.97 -161.89 REMARK 500 2 LYS A 55 100.50 51.87 REMARK 500 2 TRP A 58 -81.37 -138.74 REMARK 500 2 LYS A 68 16.57 -140.81 REMARK 500 2 ARG A 69 72.10 63.51 REMARK 500 2 LEU A 73 -70.90 -114.20 REMARK 500 2 HIS A 76 -19.35 -42.75 REMARK 500 2 TRP A 77 66.42 -110.74 REMARK 500 2 THR A 78 173.14 -47.14 REMARK 500 2 GLN A 85 -157.21 -128.00 REMARK 500 3 ALA A 2 148.21 -174.46 REMARK 500 3 LEU A 3 -100.16 -80.32 REMARK 500 3 ASP A 4 6.59 51.87 REMARK 500 3 ILE A 6 -102.11 -50.14 REMARK 500 3 ARG A 7 -50.09 -156.03 REMARK 500 3 MET A 8 -163.37 -62.80 REMARK 500 3 PRO A 9 -2.73 -49.47 REMARK 500 3 CYS A 12 -77.31 -53.60 REMARK 500 3 ASP A 15 -36.26 -141.51 REMARK 500 3 THR A 17 -174.96 -170.47 REMARK 500 3 ASP A 26 11.86 -67.77 REMARK 500 3 VAL A 27 -25.82 -143.94 REMARK 500 3 LEU A 52 -139.35 -67.76 REMARK 500 REMARK 500 THIS ENTRY HAS 373 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17827 RELATED DB: BMRB DBREF 2LGX A 1 105 UNP Q96AC1 FERM2_HUMAN 1 105 SEQADV 2LGX GLY A -6 UNP Q96AC1 EXPRESSION TAG SEQADV 2LGX ALA A -5 UNP Q96AC1 EXPRESSION TAG SEQADV 2LGX MET A -4 UNP Q96AC1 EXPRESSION TAG SEQADV 2LGX PRO A -3 UNP Q96AC1 EXPRESSION TAG SEQADV 2LGX ASP A -2 UNP Q96AC1 EXPRESSION TAG SEQADV 2LGX GLU A -1 UNP Q96AC1 EXPRESSION TAG SEQADV 2LGX PHE A 0 UNP Q96AC1 EXPRESSION TAG SEQADV 2LGX VAL A 27 UNP Q96AC1 LEU 27 CONFLICT SEQRES 1 A 112 GLY ALA MET PRO ASP GLU PHE MET ALA LEU ASP GLY ILE SEQRES 2 A 112 ARG MET PRO ASP GLY CYS TYR ALA ASP GLY THR TRP GLU SEQRES 3 A 112 LEU SER VAL HIS VAL THR ASP VAL ASN ARG ASP VAL THR SEQRES 4 A 112 LEU ARG VAL THR GLY GLU VAL HIS ILE GLY GLY VAL MET SEQRES 5 A 112 LEU LYS LEU VAL GLU LYS LEU ASP VAL LYS LYS ASP TRP SEQRES 6 A 112 SER ASP HIS ALA LEU TRP TRP GLU LYS LYS ARG THR TRP SEQRES 7 A 112 LEU LEU LYS THR HIS TRP THR LEU ASP LYS TYR GLY ILE SEQRES 8 A 112 GLN ALA ASP ALA LYS LEU GLN PHE THR PRO GLN HIS LYS SEQRES 9 A 112 LEU LEU ARG LEU GLN LEU PRO ASN HELIX 1 1 HIS A 40 LEU A 52 1 13 HELIX 2 2 THR A 78 GLY A 83 1 6 SHEET 1 A 2 LEU A 20 SER A 21 0 SHEET 2 A 2 THR A 32 LEU A 33 -1 O LEU A 33 N LEU A 20 SHEET 1 B 2 LEU A 63 TRP A 64 0 SHEET 2 B 2 TRP A 71 LEU A 72 -1 O LEU A 72 N LEU A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1