HEADER LIGASE 03-AUG-11 2LGY TITLE UBIQUITIN-LIKE DOMAIN FROM HOIL-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RANBP-TYPE AND C3HC4-TYPE ZINC FINGER-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 51-139; COMPND 5 SYNONYM: HBV-ASSOCIATED FACTOR 4, HEME-OXIDIZED IRP2 UBIQUITIN LIGASE COMPND 6 1, HOIL-1, HEPATITIS B VIRUS X-ASSOCIATED PROTEIN 4, RING FINGER COMPND 7 PROTEIN 54, UBIQUITIN-CONJUGATING ENZYME 7-INTERACTING PROTEIN 3; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBCK1, C20ORF18, RNF54, UBCE7IP3, XAP3, XAP4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: CODON PLUS RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS UBIQUITIN, HOIP, E3 LIGASE, UBLD, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.A.BEASLEY,G.S.SHAW REVDAT 4 15-MAY-24 2LGY 1 REMARK REVDAT 3 14-JUN-23 2LGY 1 REMARK SEQADV REVDAT 2 27-JUN-12 2LGY 1 JRNL REVDAT 1 20-JUN-12 2LGY 0 JRNL AUTH S.A.BEASLEY,S.S.SAFADI,K.R.BARBER,G.S.SHAW JRNL TITL SOLUTION STRUCTURE OF THE E3 LIGASE HOIL-1 UBL DOMAIN. JRNL REF PROTEIN SCI. V. 21 1085 2012 JRNL REFN ISSN 0961-8368 JRNL PMID 22517668 JRNL DOI 10.1002/PRO.2080 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 5.0, X-PLOR NIH 2.11.0 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BASED ON MODIFIED RECOORD SCRIPTS REMARK 4 REMARK 4 2LGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102379. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 61 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM POTASSIUM PHOSPHATE, 1 MM REMARK 210 EDTA, 50 MM POTASSIUM CHLORIDE, REMARK 210 30 UM DSS, 0.2 MM [U-15N] HOIL-1 REMARK 210 UBL, 90% H2O/10% D2O; 10 MM REMARK 210 POTASSIUM PHOSPHATE, 1 MM EDTA, REMARK 210 50 MM POTASSIUM CHLORIDE, 30 UM REMARK 210 DSS, 0.2 MM [U-13C; U-15N] HOIL- REMARK 210 1 UBL, 90% H2O/10% D2O; 10 MM REMARK 210 POTASSIUM PHOSPHATE, 1 MM EDTA, REMARK 210 50 MM POTASSIUM CHLORIDE, 30 UM REMARK 210 DSS, 0.2 MM [U-13C; U-15N] HOIL- REMARK 210 1 UBL, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY AROMATIC; 2D REMARK 210 1H-13C HSQC AROMATIC; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW 5.0, CYANA 2.1, TALOS REMARK 210 TALOSPLUS, NMRVIEW 8.0.RC47, REMARK 210 PROCHECK, VNMRJ 2.1B REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 64 OG SER A 67 1.35 REMARK 500 O ALA A 84 HE ARG A 85 1.36 REMARK 500 O TRP A 52 HH11 ARG A 57 1.38 REMARK 500 O GLU A 13 H LEU A 81 1.40 REMARK 500 O SER A 11 H LEU A 79 1.40 REMARK 500 H ILE A 6 O VAL A 26 1.40 REMARK 500 OD1 ASP A 5 HH21 ARG A 27 1.40 REMARK 500 H VAL A 12 O VAL A 20 1.42 REMARK 500 HH21 ARG A 7 OG1 THR A 25 1.42 REMARK 500 O MET A 38 H ASP A 42 1.42 REMARK 500 HZ3 LYS A 36 OD1 ASP A 61 1.43 REMARK 500 O VAL A 32 H LYS A 36 1.44 REMARK 500 OE1 GLU A 13 HG1 THR A 19 1.44 REMARK 500 OE1 GLN A 16 HH22 ARG A 85 1.45 REMARK 500 H VAL A 53 O TYR A 78 1.45 REMARK 500 OE1 GLN A 50 HE1 TRP A 52 1.46 REMARK 500 O LEU A 8 H LEU A 24 1.46 REMARK 500 HG1 THR A 31 O GLU A 63 1.46 REMARK 500 O SER A 83 HH21 ARG A 85 1.47 REMARK 500 O THR A 64 HG SER A 67 1.48 REMARK 500 O GLN A 51 H TYR A 80 1.48 REMARK 500 O PHE A 45 HE21 GLN A 50 1.49 REMARK 500 O MET A 30 H LEU A 65 1.50 REMARK 500 H LEU A 8 O LEU A 24 1.50 REMARK 500 H VAL A 10 O ILE A 22 1.51 REMARK 500 OD1 ASP A 14 H GLN A 16 1.51 REMARK 500 O TRP A 9 H ALA A 77 1.51 REMARK 500 O GLN A 56 HD1 HIS A 68 1.53 REMARK 500 O VAL A 39 H TYR A 43 1.53 REMARK 500 H GLU A 13 O LEU A 79 1.55 REMARK 500 OD1 ASP A 14 HE21 GLN A 16 1.55 REMARK 500 HH21 ARG A 60 OE1 GLN A 62 1.56 REMARK 500 O ASP A 37 H LEU A 41 1.56 REMARK 500 OD2 ASP A 5 HE ARG A 27 1.56 REMARK 500 O ILE A 54 H ARG A 57 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 84 -166.21 -54.92 REMARK 500 1 ARG A 85 -153.72 -166.54 REMARK 500 2 ALA A 59 12.77 -62.99 REMARK 500 2 SER A 83 97.76 -56.54 REMARK 500 2 THR A 87 44.19 -68.02 REMARK 500 2 LEU A 89 59.81 -65.74 REMARK 500 3 GLN A 16 0.54 -67.89 REMARK 500 3 ALA A 59 49.40 -65.59 REMARK 500 3 ARG A 71 -35.11 -152.98 REMARK 500 3 SER A 83 46.45 -63.10 REMARK 500 3 ASN A 86 99.56 -36.84 REMARK 500 4 GLN A 50 93.48 -69.25 REMARK 500 4 ALA A 59 47.40 -63.91 REMARK 500 4 SER A 83 98.77 -66.07 REMARK 500 5 ALA A 59 41.88 -61.93 REMARK 500 6 GLN A 16 1.25 -67.61 REMARK 500 6 MET A 17 36.91 70.40 REMARK 500 6 GLN A 50 49.03 -60.62 REMARK 500 6 ALA A 59 50.26 -68.35 REMARK 500 6 SER A 83 57.00 -69.80 REMARK 500 7 PHE A 45 105.46 -54.47 REMARK 500 7 GLN A 50 46.34 -69.59 REMARK 500 7 VAL A 70 82.45 -70.00 REMARK 500 7 SER A 83 58.03 -64.68 REMARK 500 7 ASN A 86 35.31 -74.27 REMARK 500 7 THR A 87 65.92 -161.80 REMARK 500 8 THR A 3 58.83 -67.50 REMARK 500 8 ASP A 5 -162.03 -70.44 REMARK 500 8 PRO A 46 107.45 -55.37 REMARK 500 8 GLN A 50 39.82 -52.34 REMARK 500 8 GLN A 56 8.79 -65.88 REMARK 500 8 LEU A 58 -169.96 -102.63 REMARK 500 8 ALA A 59 54.93 -67.55 REMARK 500 8 ARG A 71 -33.55 -145.63 REMARK 500 8 THR A 87 74.47 -68.18 REMARK 500 9 MET A 17 50.60 81.32 REMARK 500 9 SER A 83 43.35 -73.94 REMARK 500 9 ASN A 86 34.26 -69.51 REMARK 500 10 MET A 17 15.46 81.09 REMARK 500 10 ALA A 59 44.59 -65.07 REMARK 500 10 SER A 83 20.78 -67.07 REMARK 500 11 ALA A 59 47.52 -68.23 REMARK 500 11 ALA A 84 165.78 -49.87 REMARK 500 11 THR A 87 71.94 -63.25 REMARK 500 11 SER A 88 73.39 -100.70 REMARK 500 11 LEU A 89 48.07 -66.71 REMARK 500 12 THR A 3 92.44 70.56 REMARK 500 12 MET A 17 48.16 81.10 REMARK 500 12 MET A 30 176.59 -58.35 REMARK 500 12 GLN A 50 85.06 -65.33 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17828 RELATED DB: BMRB DBREF 2LGY A 2 90 UNP Q9BYM8 HOIL1_HUMAN 51 139 SEQADV 2LGY MET A 1 UNP Q9BYM8 INITIATING METHIONINE SEQRES 1 A 90 MET PRO THR GLN ASP ILE ARG LEU TRP VAL SER VAL GLU SEQRES 2 A 90 ASP ALA GLN MET HIS THR VAL THR ILE TRP LEU THR VAL SEQRES 3 A 90 ARG PRO ASP MET THR VAL ALA SER LEU LYS ASP MET VAL SEQRES 4 A 90 PHE LEU ASP TYR GLY PHE PRO PRO VAL LEU GLN GLN TRP SEQRES 5 A 90 VAL ILE GLY GLN ARG LEU ALA ARG ASP GLN GLU THR LEU SEQRES 6 A 90 HIS SER HIS GLY VAL ARG GLN ASN GLY ASP SER ALA TYR SEQRES 7 A 90 LEU TYR LEU LEU SER ALA ARG ASN THR SER LEU ASN HELIX 1 1 THR A 31 GLY A 44 1 14 HELIX 2 2 LEU A 65 GLY A 69 5 5 SHEET 1 A 4 THR A 19 VAL A 26 0 SHEET 2 A 4 ILE A 6 ASP A 14 -1 N ILE A 6 O VAL A 26 SHEET 3 A 4 ASP A 75 LEU A 81 1 O LEU A 79 N SER A 11 SHEET 4 A 4 GLN A 51 VAL A 53 -1 N VAL A 53 O TYR A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1