HEADER TRANSFERASE, MEMBRANE PROTEIN 03-AUG-11 2LGZ TITLE SOLUTION STRUCTURE OF STT3P COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN COMPND 3 GLYCOSYLTRANSFERASE SUBUNIT STT3; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: LUMENAL DOMAIN RESIDUES 465-718; COMPND 6 SYNONYM: OLIGOSACCHARYL TRANSFERASE SUBUNIT STT3; COMPND 7 EC: 2.4.1.119; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: STT3, YGL022W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 28C KEYWDS CATALYTIC DOMAIN, OLIGOSACCHARYL TRANSFERASE, MEMBRANE PROTEIN, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.HUANG,R.BHASKARAN,S.MOHANTY REVDAT 3 14-JUN-23 2LGZ 1 REMARK SEQADV REVDAT 2 10-OCT-12 2LGZ 1 JRNL REVDAT 1 01-AUG-12 2LGZ 0 JRNL AUTH C.HUANG,R.BHASKARAN,S.MOHANTY JRNL TITL EUKARYOTIC N-GLYCOSYLATION OCCURS VIA THE MEMBRANE-ANCHORED JRNL TITL 2 C-TERMINAL DOMAIN OF THE STT3P SUBUNIT OF JRNL TITL 3 OLIGOSACCHARYLTRANSFERASE. JRNL REF J.BIOL.CHEM. V. 287 32450 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22865878 JRNL DOI 10.1074/JBC.M112.342253 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102380. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 328 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 600 UM [U-13C; U-15N; U-2H] REMARK 210 PROTEIN, 100 MM [U-100% 2H] SDS REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HBHA(CO)NH; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY; 3D HCCH-TOCSY; REMARK 210 3D HNHA; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 22 H ARG A 26 1.45 REMARK 500 O ASP A 191 HB2 PHE A 192 1.47 REMARK 500 O THR A 22 N ARG A 26 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 140.07 -176.15 REMARK 500 1 HIS A 5 83.62 -178.61 REMARK 500 1 HIS A 6 78.13 -174.09 REMARK 500 1 HIS A 7 119.74 -179.04 REMARK 500 1 HIS A 8 114.79 -177.98 REMARK 500 1 SER A 12 123.79 -179.65 REMARK 500 1 ARG A 17 -72.70 -168.93 REMARK 500 1 SER A 19 -166.00 -61.08 REMARK 500 1 TRP A 23 -39.50 -34.59 REMARK 500 1 TYR A 29 -58.58 -19.40 REMARK 500 1 SER A 30 153.75 69.49 REMARK 500 1 SER A 31 86.36 175.90 REMARK 500 1 SER A 33 -29.23 -150.17 REMARK 500 1 LEU A 36 -66.65 -10.87 REMARK 500 1 PRO A 37 56.61 -69.81 REMARK 500 1 SER A 38 -81.89 159.04 REMARK 500 1 THR A 40 67.17 178.43 REMARK 500 1 PRO A 41 -164.58 -69.75 REMARK 500 1 ASP A 42 103.28 -49.48 REMARK 500 1 LYS A 44 -122.35 -92.05 REMARK 500 1 MET A 60 -56.04 -26.92 REMARK 500 1 ASN A 61 -61.39 70.45 REMARK 500 1 SER A 62 -154.39 71.43 REMARK 500 1 ASP A 63 35.45 87.72 REMARK 500 1 ASP A 65 -36.60 -163.03 REMARK 500 1 LYS A 67 -77.13 -52.35 REMARK 500 1 ALA A 82 55.62 -175.00 REMARK 500 1 ASP A 83 -83.56 -146.26 REMARK 500 1 PRO A 108 82.53 -69.82 REMARK 500 1 GLU A 109 -78.35 -166.45 REMARK 500 1 GLU A 110 -86.09 -93.36 REMARK 500 1 LYS A 111 142.41 154.50 REMARK 500 1 LEU A 131 -1.60 65.23 REMARK 500 1 ILE A 132 -33.06 166.41 REMARK 500 1 PHE A 134 99.90 67.47 REMARK 500 1 LYS A 141 -75.49 -84.60 REMARK 500 1 LEU A 143 160.44 179.00 REMARK 500 1 TRP A 144 153.61 -39.81 REMARK 500 1 ARG A 147 86.24 47.51 REMARK 500 1 ILE A 148 143.83 59.67 REMARK 500 1 SER A 149 44.81 -171.81 REMARK 500 1 GLU A 150 169.26 59.60 REMARK 500 1 TRP A 153 160.58 -46.17 REMARK 500 1 PRO A 154 59.69 -69.74 REMARK 500 1 ALA A 165 -169.20 63.82 REMARK 500 1 GLU A 166 -75.01 -51.91 REMARK 500 1 GLU A 168 -73.96 -51.65 REMARK 500 1 TYR A 169 50.99 -174.31 REMARK 500 1 VAL A 171 -3.56 77.08 REMARK 500 1 ALA A 173 -143.42 -76.50 REMARK 500 REMARK 500 THIS ENTRY HAS 724 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16701 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT DATA DBREF 2LGZ A 20 273 UNP P39007 STT3_YEAST 465 718 SEQADV 2LGZ MET A 1 UNP P39007 EXPRESSION TAG SEQADV 2LGZ GLY A 2 UNP P39007 EXPRESSION TAG SEQADV 2LGZ SER A 3 UNP P39007 EXPRESSION TAG SEQADV 2LGZ SER A 4 UNP P39007 EXPRESSION TAG SEQADV 2LGZ HIS A 5 UNP P39007 EXPRESSION TAG SEQADV 2LGZ HIS A 6 UNP P39007 EXPRESSION TAG SEQADV 2LGZ HIS A 7 UNP P39007 EXPRESSION TAG SEQADV 2LGZ HIS A 8 UNP P39007 EXPRESSION TAG SEQADV 2LGZ HIS A 9 UNP P39007 EXPRESSION TAG SEQADV 2LGZ HIS A 10 UNP P39007 EXPRESSION TAG SEQADV 2LGZ SER A 11 UNP P39007 EXPRESSION TAG SEQADV 2LGZ SER A 12 UNP P39007 EXPRESSION TAG SEQADV 2LGZ GLY A 13 UNP P39007 EXPRESSION TAG SEQADV 2LGZ LEU A 14 UNP P39007 EXPRESSION TAG SEQADV 2LGZ VAL A 15 UNP P39007 EXPRESSION TAG SEQADV 2LGZ PRO A 16 UNP P39007 EXPRESSION TAG SEQADV 2LGZ ARG A 17 UNP P39007 EXPRESSION TAG SEQADV 2LGZ GLY A 18 UNP P39007 EXPRESSION TAG SEQADV 2LGZ SER A 19 UNP P39007 EXPRESSION TAG SEQADV 2LGZ ASN A 105 UNP P39007 MET 550 CONFLICT SEQADV 2LGZ ASN A 145 UNP P39007 MET 590 CONFLICT SEQADV 2LGZ ASN A 231 UNP P39007 MET 676 CONFLICT SEQRES 1 A 273 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 273 LEU VAL PRO ARG GLY SER HIS SER THR TRP VAL THR ARG SEQRES 3 A 273 THR ALA TYR SER SER PRO SER VAL VAL LEU PRO SER GLN SEQRES 4 A 273 THR PRO ASP GLY LYS LEU ALA LEU ILE ASP ASP PHE ARG SEQRES 5 A 273 GLU ALA TYR TYR TRP LEU ARG MET ASN SER ASP GLU ASP SEQRES 6 A 273 SER LYS VAL ALA ALA TRP TRP ASP TYR GLY TYR GLN ILE SEQRES 7 A 273 GLY GLY MET ALA ASP ARG THR THR LEU VAL ASP ASN ASN SEQRES 8 A 273 THR TRP ASN ASN THR HIS ILE ALA ILE VAL GLY LYS ALA SEQRES 9 A 273 ASN ALA SER PRO GLU GLU LYS SER TYR GLU ILE LEU LYS SEQRES 10 A 273 GLU HIS ASP VAL ASP TYR VAL LEU VAL ILE PHE GLY GLY SEQRES 11 A 273 LEU ILE GLY PHE GLY GLY ASP ASP ILE ASN LYS PHE LEU SEQRES 12 A 273 TRP ASN ILE ARG ILE SER GLU GLY ILE TRP PRO GLU GLU SEQRES 13 A 273 ILE LYS GLU ARG ASP PHE TYR THR ALA GLU GLY GLU TYR SEQRES 14 A 273 ARG VAL ASP ALA ARG ALA SER GLU THR MET ARG ASN SER SEQRES 15 A 273 LEU LEU TYR LYS MET SER TYR LYS ASP PHE PRO GLN LEU SEQRES 16 A 273 PHE ASN GLY GLY GLN ALA THR ASP ARG VAL ARG GLN GLN SEQRES 17 A 273 MET ILE THR PRO LEU ASP VAL PRO PRO LEU ASP TYR PHE SEQRES 18 A 273 ASP GLU VAL PHE THR SER GLU ASN TRP ASN VAL ARG ILE SEQRES 19 A 273 TYR GLN LEU LYS LYS ASP ASP ALA GLN GLY ARG THR LEU SEQRES 20 A 273 ARG ASP VAL GLY GLU LEU THR ARG SER SER THR LYS THR SEQRES 21 A 273 ARG ARG SER ILE LYS ARG PRO GLU LEU GLY LEU ARG VAL HELIX 1 1 SER A 21 ARG A 26 1 6 HELIX 2 2 THR A 27 SER A 30 5 4 HELIX 3 3 LEU A 45 ARG A 59 1 15 HELIX 4 4 SER A 66 GLN A 77 1 12 HELIX 5 5 ASN A 90 SER A 107 1 18 HELIX 6 6 GLU A 114 GLY A 129 1 16 HELIX 7 7 GLU A 155 PHE A 162 1 8 HELIX 8 8 ALA A 175 ASP A 191 1 17 HELIX 9 9 GLN A 200 GLN A 208 1 9 HELIX 10 10 TYR A 220 THR A 226 1 7 HELIX 11 11 ASN A 229 ALA A 242 1 14 HELIX 12 12 THR A 246 GLY A 251 1 6 HELIX 13 13 GLU A 252 SER A 256 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1