HEADER METAL BINDING PROTEIN 10-AUG-11 2LHH TITLE SOLUTION STRUCTURE OF CA2+-BOUND YCAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-121; COMPND 5 SYNONYM: CAM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: CMD1, YBR109C, YBR0904; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS YEAST CALMODULIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.OGURA,K.TAKAHASHI,Y.KOBASHIGAWA,R.YOSHIDA,H.ITOH,M.YAZAWA,F.INAGAKI REVDAT 2 14-JUN-23 2LHH 1 REMARK SEQADV LINK REVDAT 1 29-AUG-12 2LHH 0 JRNL AUTH K.OGURA,H.KUMETA,K.TAKAHASI,Y.KOBASHIGAWA,R.YOSHIDA,H.ITOH, JRNL AUTH 2 M.YAZAWA,F.INAGAKI JRNL TITL SOLUTION STRUCTURES OF YEAST SACCHAROMYCES CEREVISIAE JRNL TITL 2 CALMODULIN IN CALCIUM- AND TARGET PEPTIDE-BOUND STATES JRNL TITL 3 REVEAL SIMILARITIES AND DIFFERENCES TO VERTEBRATE JRNL TITL 4 CALMODULIN. JRNL REF GENES CELLS V. 17 159 2012 JRNL REFN ISSN 1356-9597 JRNL PMID 22280008 JRNL DOI 10.1111/J.1365-2443.2012.01580.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, SPARKY 3.113 REMARK 3 AUTHORS : VARIAN (VNMR), GODDARD (SPARKY) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102390. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 YCAM_123-1, 20 MM MES-2, 150 MM REMARK 210 SODIUM CHLORIDE-3, 5 MM CACL2-4, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D HNCA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HN(CA) REMARK 210 HA; 3D (HCA)CO(CA)NH; 3D C(CO)NH; REMARK 210 3D HCCH-TOCSY ALIPHATIC; 3D REMARK 210 HCCH-TOCSY AROMATIC; 2D REMARK 210 HBCBCGCDHD; 2D HBCBCGCDCEHE; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 5.2, SPARKY 3.113, CYANA REMARK 210 2.1, TALOS 2003.027.13.05 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 14 -65.49 -90.34 REMARK 500 1 SER A 29 -29.65 -39.72 REMARK 500 1 HIS A 61 36.41 75.02 REMARK 500 1 LYS A 77 -70.44 -41.57 REMARK 500 1 ILE A 112 163.93 -43.87 REMARK 500 1 GLU A 122 99.22 -38.98 REMARK 500 1 HIS A 127 79.28 -101.73 REMARK 500 2 GLU A 14 -65.60 -92.97 REMARK 500 2 HIS A 61 37.47 81.45 REMARK 500 2 ILE A 112 163.92 -42.78 REMARK 500 2 GLU A 114 -61.61 -123.62 REMARK 500 2 LEU A 116 113.43 -175.41 REMARK 500 2 GLU A 122 87.20 -56.71 REMARK 500 3 HIS A 61 37.75 82.00 REMARK 500 3 SER A 78 36.12 39.42 REMARK 500 3 GLU A 114 -85.89 -36.91 REMARK 500 3 GLU A 122 110.04 -38.90 REMARK 500 3 HIS A 125 -72.13 -105.09 REMARK 500 4 LEU A 4 176.40 -49.15 REMARK 500 4 LEU A 39 -72.70 -59.86 REMARK 500 4 HIS A 61 38.03 73.87 REMARK 500 4 LEU A 76 76.32 -65.91 REMARK 500 4 LYS A 77 121.08 -171.55 REMARK 500 4 ASN A 79 139.99 -170.28 REMARK 500 4 ASP A 80 97.90 -55.99 REMARK 500 4 ASP A 93 108.44 -58.16 REMARK 500 5 GLU A 14 -65.82 -92.76 REMARK 500 5 HIS A 61 35.97 76.95 REMARK 500 5 GLN A 75 97.26 -38.97 REMARK 500 5 LEU A 76 -176.88 -60.96 REMARK 500 5 ASN A 79 26.83 49.23 REMARK 500 5 SER A 81 168.90 179.55 REMARK 500 5 SER A 101 -163.41 -115.29 REMARK 500 5 ILE A 112 15.84 59.53 REMARK 500 5 LYS A 115 26.40 45.19 REMARK 500 5 THR A 117 -169.05 -124.51 REMARK 500 5 GLU A 122 104.06 -40.96 REMARK 500 5 HIS A 124 121.67 -39.99 REMARK 500 5 HIS A 126 52.89 70.48 REMARK 500 6 HIS A 61 42.57 78.16 REMARK 500 6 LYS A 77 -72.62 -72.68 REMARK 500 6 ASN A 79 60.53 74.31 REMARK 500 6 GLU A 114 -65.58 -105.76 REMARK 500 6 LYS A 115 101.55 -40.55 REMARK 500 6 GLU A 122 -76.37 -57.49 REMARK 500 6 HIS A 123 26.36 45.33 REMARK 500 6 HIS A 127 74.87 -67.02 REMARK 500 7 GLU A 14 -63.81 -92.88 REMARK 500 7 HIS A 61 44.13 73.45 REMARK 500 7 LEU A 76 -76.10 -126.71 REMARK 500 REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 22 OD2 88.1 REMARK 620 3 ASN A 24 OD1 57.2 67.7 REMARK 620 4 SER A 26 O 105.7 96.5 57.2 REMARK 620 5 GLU A 31 OE2 123.9 57.0 124.1 119.4 REMARK 620 6 GLU A 31 OE1 163.4 75.4 114.2 76.2 46.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 58 OD2 125.4 REMARK 620 3 ASN A 60 OD1 56.9 91.4 REMARK 620 4 GLN A 62 O 66.0 139.2 60.9 REMARK 620 5 GLU A 67 OE2 118.3 98.9 169.1 108.4 REMARK 620 6 GLU A 67 OE1 128.0 106.5 126.9 74.4 46.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASN A 95 OD1 46.4 REMARK 620 3 ASP A 97 OD1 90.3 51.7 REMARK 620 4 LEU A 99 O 77.4 116.4 116.2 REMARK 620 5 GLU A 104 OE2 63.1 97.0 148.6 75.9 REMARK 620 6 GLU A 104 OE1 88.5 90.2 122.2 119.7 46.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17849 RELATED DB: BMRB REMARK 900 RELATED ID: 2LHI RELATED DB: PDB REMARK 900 RELATED ID: 1LKJ RELATED DB: PDB DBREF 2LHH A 1 120 UNP P06787 CALM_YEAST 2 121 SEQADV 2LHH LEU A 121 UNP P06787 EXPRESSION TAG SEQADV 2LHH GLU A 122 UNP P06787 EXPRESSION TAG SEQADV 2LHH HIS A 123 UNP P06787 EXPRESSION TAG SEQADV 2LHH HIS A 124 UNP P06787 EXPRESSION TAG SEQADV 2LHH HIS A 125 UNP P06787 EXPRESSION TAG SEQADV 2LHH HIS A 126 UNP P06787 EXPRESSION TAG SEQADV 2LHH HIS A 127 UNP P06787 EXPRESSION TAG SEQADV 2LHH HIS A 128 UNP P06787 EXPRESSION TAG SEQRES 1 A 128 SER SER ASN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 128 GLU ALA PHE ALA LEU PHE ASP LYS ASP ASN ASN GLY SER SEQRES 3 A 128 ILE SER SER SER GLU LEU ALA THR VAL MET ARG SER LEU SEQRES 4 A 128 GLY LEU SER PRO SER GLU ALA GLU VAL ASN ASP LEU MET SEQRES 5 A 128 ASN GLU ILE ASP VAL ASP GLY ASN HIS GLN ILE GLU PHE SEQRES 6 A 128 SER GLU PHE LEU ALA LEU MET SER ARG GLN LEU LYS SER SEQRES 7 A 128 ASN ASP SER GLU GLN GLU LEU LEU GLU ALA PHE LYS VAL SEQRES 8 A 128 PHE ASP LYS ASN GLY ASP GLY LEU ILE SER ALA ALA GLU SEQRES 9 A 128 LEU LYS HIS VAL LEU THR SER ILE GLY GLU LYS LEU THR SEQRES 10 A 128 ASP ALA GLU LEU GLU HIS HIS HIS HIS HIS HIS HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) HELIX 1 1 THR A 5 ASP A 20 1 16 HELIX 2 2 SER A 28 GLY A 40 1 13 HELIX 3 3 SER A 44 ASP A 56 1 13 HELIX 4 4 GLU A 64 ARG A 74 1 11 HELIX 5 5 GLU A 84 PHE A 89 1 6 HELIX 6 6 LYS A 90 ASP A 93 5 4 HELIX 7 7 SER A 101 ILE A 112 1 12 LINK OD1 ASP A 20 CA CA A 201 1555 1555 2.85 LINK OD2 ASP A 22 CA CA A 201 1555 1555 3.20 LINK OD1 ASN A 24 CA CA A 201 1555 1555 2.85 LINK O SER A 26 CA CA A 201 1555 1555 2.85 LINK OE2 GLU A 31 CA CA A 201 1555 1555 2.85 LINK OE1 GLU A 31 CA CA A 201 1555 1555 2.85 LINK OD1 ASP A 56 CA CA A 202 1555 1555 2.85 LINK OD2 ASP A 58 CA CA A 202 1555 1555 3.20 LINK OD1 ASN A 60 CA CA A 202 1555 1555 2.85 LINK O GLN A 62 CA CA A 202 1555 1555 2.85 LINK OE2 GLU A 67 CA CA A 202 1555 1555 2.85 LINK OE1 GLU A 67 CA CA A 202 1555 1555 2.85 LINK OD1 ASP A 93 CA CA A 203 1555 1555 3.19 LINK OD1 ASN A 95 CA CA A 203 1555 1555 2.85 LINK OD1 ASP A 97 CA CA A 203 1555 1555 2.85 LINK O LEU A 99 CA CA A 203 1555 1555 2.85 LINK OE2 GLU A 104 CA CA A 203 1555 1555 2.85 LINK OE1 GLU A 104 CA CA A 203 1555 1555 2.85 SITE 1 AC1 5 ASP A 20 ASP A 22 ASN A 24 SER A 26 SITE 2 AC1 5 GLU A 31 SITE 1 AC2 6 ASP A 56 VAL A 57 ASP A 58 ASN A 60 SITE 2 AC2 6 GLN A 62 GLU A 67 SITE 1 AC3 5 ASP A 93 ASN A 95 ASP A 97 LEU A 99 SITE 2 AC3 5 GLU A 104 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1