data_2LHR # _entry.id 2LHR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LHR pdb_00002lhr 10.2210/pdb2lhr/pdb RCSB RCSB102399 ? ? BMRB 17862 ? ? WWPDB D_1000102399 ? ? # _pdbx_database_related.db_id 17862 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LHR _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-08-12 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Spirig, T.' 1 'Clubb, R.T.' 2 'Malmirchegini, G.R.' 3 'Robson, S.A.' 4 # _citation.id primary _citation.title 'Staphylococcus aureus Uses a Novel Multidomain Receptor to Break Apart Human Hemoglobin and Steal Its Heme.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 1065 _citation.page_last 1078 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23132864 _citation.pdbx_database_id_DOI 10.1074/jbc.M112.419119 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Spirig, T.' 1 ? primary 'Malmirchegini, G.R.' 2 ? primary 'Zhang, J.' 3 ? primary 'Robson, S.A.' 4 ? primary 'Sjodt, M.' 5 ? primary 'Liu, M.' 6 ? primary 'Krishna Kumar, K.' 7 ? primary 'Dickson, C.F.' 8 ? primary 'Gell, D.A.' 9 ? primary 'Lei, B.' 10 ? primary 'Loo, J.A.' 11 ? primary 'Clubb, R.T.' 12 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Iron-regulated surface determinant protein H' _entity.formula_weight 9280.319 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 467-543' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Haptoglobin receptor A, Staphylococcus aureus surface protein I' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SDDYVDEETYNLQKLLAPYHKAKTLERQVYELEKLQEKLPEKYKAEYKKKLDQTRVELADQVKSAVTEFENVTPTNDQ _entity_poly.pdbx_seq_one_letter_code_can SDDYVDEETYNLQKLLAPYHKAKTLERQVYELEKLQEKLPEKYKAEYKKKLDQTRVELADQVKSAVTEFENVTPTNDQ _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASP n 1 3 ASP n 1 4 TYR n 1 5 VAL n 1 6 ASP n 1 7 GLU n 1 8 GLU n 1 9 THR n 1 10 TYR n 1 11 ASN n 1 12 LEU n 1 13 GLN n 1 14 LYS n 1 15 LEU n 1 16 LEU n 1 17 ALA n 1 18 PRO n 1 19 TYR n 1 20 HIS n 1 21 LYS n 1 22 ALA n 1 23 LYS n 1 24 THR n 1 25 LEU n 1 26 GLU n 1 27 ARG n 1 28 GLN n 1 29 VAL n 1 30 TYR n 1 31 GLU n 1 32 LEU n 1 33 GLU n 1 34 LYS n 1 35 LEU n 1 36 GLN n 1 37 GLU n 1 38 LYS n 1 39 LEU n 1 40 PRO n 1 41 GLU n 1 42 LYS n 1 43 TYR n 1 44 LYS n 1 45 ALA n 1 46 GLU n 1 47 TYR n 1 48 LYS n 1 49 LYS n 1 50 LYS n 1 51 LEU n 1 52 ASP n 1 53 GLN n 1 54 THR n 1 55 ARG n 1 56 VAL n 1 57 GLU n 1 58 LEU n 1 59 ALA n 1 60 ASP n 1 61 GLN n 1 62 VAL n 1 63 LYS n 1 64 SER n 1 65 ALA n 1 66 VAL n 1 67 THR n 1 68 GLU n 1 69 PHE n 1 70 GLU n 1 71 ASN n 1 72 VAL n 1 73 THR n 1 74 PRO n 1 75 THR n 1 76 ASN n 1 77 ASP n 1 78 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'isdH, harA, sasI, MW1674' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MW2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 196620 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ISDH_STAAW _struct_ref.pdbx_db_accession Q8NW39 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DDYVDEETYNLQKLLAPYHKAKTLERQVYELEKLQEKLPEKYKAEYKKKLDQTRVELADQVKSAVTEFENVTPTNDQ _struct_ref.pdbx_align_begin 467 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LHR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 78 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8NW39 _struct_ref_seq.db_align_beg 467 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 543 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 467 _struct_ref_seq.pdbx_auth_seq_align_end 543 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2LHR _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8NW39 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 466 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 2 '3D HNCACB' 1 3 2 '3D CBCA(CO)NH' 1 4 2 '3D HN(CA)CO' 1 5 2 '3D HNCO' 1 6 2 '3D CC(CO)NH' 1 7 2 '3D HBHA(CO)NH' 1 8 1 '3D HNHA' 1 9 1 '3D HNHB' 1 10 2 '3D HCCH-TOCSY' 1 11 1 '3D 1H-15N TOCSY' 1 12 2 '3D HCCH-COSY' 1 13 3 '3D HCCH-TOCSY' 1 14 1 '3D 1H-15N NOESY' 1 15 2 '3D 1H-13C NOESY' 1 16 3 '3D 1H-13C NOESY' 1 17 2 '2D 1H-13C HSQC' 1 18 3 '2D 1H-13C HSQC' 1 19 3 '3D 1H-13C NOESY aromatic' 1 20 3 '2D CB(CGCD)HD' 1 21 3 '2D CB(CGCD)HE' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 140 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1.1 mM [U-100% 15N] IsdH linker, 20 mM potassium phosphate, 50 mM potassium chloride, 100 uM AEBSF protease inhibitor, 0.01 % sodium azide, 7 % D2O, 93% H2O/7% D2O ; 1 '93% H2O/7% D2O' ;1.3 mM [U-100% 13C; U-100% 15N] IsdH linker, 20 mM potassium phosphate, 50 mM potassium chloride, 100 uM AEBSF protease inhibitor, 0.01 % sodium azide, 7 % D2O, 93% H2O/7% D2O ; 2 '93% H2O/7% D2O' ;1.3 mM [U-100% 13C; U-100% 15N] IsdH linker, 20 mM potassium phosphate, 50 mM potassium chloride, 100 uM AEBSF protease inhibitor, 0.01 % sodium azide, 100 % D2O, 100% D2O ; 3 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker AVANCE 1 'Bruker Avance' 600 Bruker AVANCE 2 'Bruker Avance' 800 Bruker AVANCE 3 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LHR _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LHR _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LHR _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Garrett 'peak picking' PIPP ? 1 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRDraw ? 4 'Herrmann, Guntert and Wuthrich' 'chemical shift assignment' UNIO ? 5 'Laskowski and MacArthur' 'geometry optimization' ProcheckNMR ? 6 'Cornilescu, Delaglio and Bax' 'geometry optimization' TALOS ? 7 'Bruker Biospin' collection XwinNMR ? 8 Keller 'chemical shift assignment' CARA ? 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Solution structure of the domain linking NEAT-2 and NEAT-3 domains of IsdH of Staphylococcus aureus.' _exptl.entry_id 2LHR _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LHR _struct.title 'Solution structure of Staphylococcus aureus IsdH linker domain' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LHR _struct_keywords.pdbx_keywords 'METAL TRANSPORT' _struct_keywords.text 'Heme acquisition, Iron uptake, NEAT domain, Hemoglobin receptor, METAL TRANSPORT' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 6 ? ALA A 22 ? ASP A 471 ALA A 487 1 ? 17 HELX_P HELX_P2 2 THR A 24 ? LEU A 39 ? THR A 489 LEU A 504 1 ? 16 HELX_P HELX_P3 3 PRO A 40 ? ALA A 65 ? PRO A 505 ALA A 530 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2LHR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 466 466 SER SER A . n A 1 2 ASP 2 467 467 ASP ASP A . n A 1 3 ASP 3 468 468 ASP ASP A . n A 1 4 TYR 4 469 469 TYR TYR A . n A 1 5 VAL 5 470 470 VAL VAL A . n A 1 6 ASP 6 471 471 ASP ASP A . n A 1 7 GLU 7 472 472 GLU GLU A . n A 1 8 GLU 8 473 473 GLU GLU A . n A 1 9 THR 9 474 474 THR THR A . n A 1 10 TYR 10 475 475 TYR TYR A . n A 1 11 ASN 11 476 476 ASN ASN A . n A 1 12 LEU 12 477 477 LEU LEU A . n A 1 13 GLN 13 478 478 GLN GLN A . n A 1 14 LYS 14 479 479 LYS LYS A . n A 1 15 LEU 15 480 480 LEU LEU A . n A 1 16 LEU 16 481 481 LEU LEU A . n A 1 17 ALA 17 482 482 ALA ALA A . n A 1 18 PRO 18 483 483 PRO PRO A . n A 1 19 TYR 19 484 484 TYR TYR A . n A 1 20 HIS 20 485 485 HIS HIS A . n A 1 21 LYS 21 486 486 LYS LYS A . n A 1 22 ALA 22 487 487 ALA ALA A . n A 1 23 LYS 23 488 488 LYS LYS A . n A 1 24 THR 24 489 489 THR THR A . n A 1 25 LEU 25 490 490 LEU LEU A . n A 1 26 GLU 26 491 491 GLU GLU A . n A 1 27 ARG 27 492 492 ARG ARG A . n A 1 28 GLN 28 493 493 GLN GLN A . n A 1 29 VAL 29 494 494 VAL VAL A . n A 1 30 TYR 30 495 495 TYR TYR A . n A 1 31 GLU 31 496 496 GLU GLU A . n A 1 32 LEU 32 497 497 LEU LEU A . n A 1 33 GLU 33 498 498 GLU GLU A . n A 1 34 LYS 34 499 499 LYS LYS A . n A 1 35 LEU 35 500 500 LEU LEU A . n A 1 36 GLN 36 501 501 GLN GLN A . n A 1 37 GLU 37 502 502 GLU GLU A . n A 1 38 LYS 38 503 503 LYS LYS A . n A 1 39 LEU 39 504 504 LEU LEU A . n A 1 40 PRO 40 505 505 PRO PRO A . n A 1 41 GLU 41 506 506 GLU GLU A . n A 1 42 LYS 42 507 507 LYS LYS A . n A 1 43 TYR 43 508 508 TYR TYR A . n A 1 44 LYS 44 509 509 LYS LYS A . n A 1 45 ALA 45 510 510 ALA ALA A . n A 1 46 GLU 46 511 511 GLU GLU A . n A 1 47 TYR 47 512 512 TYR TYR A . n A 1 48 LYS 48 513 513 LYS LYS A . n A 1 49 LYS 49 514 514 LYS LYS A . n A 1 50 LYS 50 515 515 LYS LYS A . n A 1 51 LEU 51 516 516 LEU LEU A . n A 1 52 ASP 52 517 517 ASP ASP A . n A 1 53 GLN 53 518 518 GLN GLN A . n A 1 54 THR 54 519 519 THR THR A . n A 1 55 ARG 55 520 520 ARG ARG A . n A 1 56 VAL 56 521 521 VAL VAL A . n A 1 57 GLU 57 522 522 GLU GLU A . n A 1 58 LEU 58 523 523 LEU LEU A . n A 1 59 ALA 59 524 524 ALA ALA A . n A 1 60 ASP 60 525 525 ASP ASP A . n A 1 61 GLN 61 526 526 GLN GLN A . n A 1 62 VAL 62 527 527 VAL VAL A . n A 1 63 LYS 63 528 528 LYS LYS A . n A 1 64 SER 64 529 529 SER SER A . n A 1 65 ALA 65 530 530 ALA ALA A . n A 1 66 VAL 66 531 531 VAL VAL A . n A 1 67 THR 67 532 532 THR THR A . n A 1 68 GLU 68 533 533 GLU GLU A . n A 1 69 PHE 69 534 534 PHE PHE A . n A 1 70 GLU 70 535 535 GLU GLU A . n A 1 71 ASN 71 536 536 ASN ASN A . n A 1 72 VAL 72 537 537 VAL VAL A . n A 1 73 THR 73 538 538 THR THR A . n A 1 74 PRO 74 539 539 PRO PRO A . n A 1 75 THR 75 540 540 THR THR A . n A 1 76 ASN 76 541 541 ASN ASN A . n A 1 77 ASP 77 542 542 ASP ASP A . n A 1 78 GLN 78 543 543 GLN GLN A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-14 2 'Structure model' 1 1 2013-01-30 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'IsdH linker-1' 1.1 ? mM '[U-100% 15N]' 1 'potassium phosphate-2' 20 ? mM ? 1 'potassium chloride-3' 50 ? mM ? 1 'AEBSF protease inhibitor-4' 100 ? uM ? 1 'sodium azide-5' 0.01 ? % ? 1 D2O-6 7 ? % ? 1 'IsdH linker-7' 1.3 ? mM '[U-100% 13C; U-100% 15N]' 2 'potassium phosphate-8' 20 ? mM ? 2 'potassium chloride-9' 50 ? mM ? 2 'AEBSF protease inhibitor-10' 100 ? uM ? 2 'sodium azide-11' 0.01 ? % ? 2 D2O-12 7 ? % ? 2 'IsdH linker-13' 1.3 ? mM '[U-100% 13C; U-100% 15N]' 3 'potassium phosphate-14' 20 ? mM ? 3 'potassium chloride-15' 50 ? mM ? 3 'AEBSF protease inhibitor-16' 100 ? uM ? 3 'sodium azide-17' 0.01 ? % ? 3 D2O-18 100 ? % ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 500 ? ? H A LEU 504 ? ? 1.52 2 2 O A LEU 500 ? ? H A LEU 504 ? ? 1.50 3 3 O A LEU 500 ? ? H A LEU 504 ? ? 1.55 4 4 O A LEU 500 ? ? H A LEU 504 ? ? 1.51 5 5 O A LEU 500 ? ? H A LEU 504 ? ? 1.57 6 7 O A LEU 500 ? ? H A LEU 504 ? ? 1.52 7 8 O A LEU 497 ? ? H A GLN 501 ? ? 1.53 8 8 O A LEU 500 ? ? H A LEU 504 ? ? 1.60 9 9 O A LEU 500 ? ? H A LEU 504 ? ? 1.60 10 10 O A LEU 500 ? ? H A LEU 504 ? ? 1.50 11 11 O A LEU 500 ? ? H A LEU 504 ? ? 1.50 12 12 O A LEU 500 ? ? H A LEU 504 ? ? 1.55 13 13 O A LEU 500 ? ? H A LEU 504 ? ? 1.52 14 14 O A LEU 500 ? ? H A LEU 504 ? ? 1.47 15 15 O A LEU 500 ? ? H A LEU 504 ? ? 1.45 16 16 O A LEU 500 ? ? H A LEU 504 ? ? 1.54 17 17 O A LEU 500 ? ? H A LEU 504 ? ? 1.46 18 18 O A LEU 500 ? ? H A LEU 504 ? ? 1.49 19 19 O A LEU 500 ? ? H A LEU 504 ? ? 1.52 20 20 O A LEU 500 ? ? H A LEU 504 ? ? 1.48 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 505 ? ? -34.01 145.69 2 1 THR A 532 ? ? -167.40 -38.74 3 1 GLU A 533 ? ? -133.72 -100.22 4 1 PHE A 534 ? ? 40.27 94.59 5 1 GLU A 535 ? ? -43.98 154.13 6 1 THR A 538 ? ? -145.20 55.39 7 1 THR A 540 ? ? 47.75 90.65 8 2 PRO A 505 ? ? -33.28 144.79 9 2 GLU A 533 ? ? 49.05 11.76 10 2 PHE A 534 ? ? 48.62 175.64 11 2 GLU A 535 ? ? -58.68 -154.29 12 3 PRO A 505 ? ? -34.37 146.70 13 3 VAL A 531 ? ? -59.13 94.71 14 3 THR A 532 ? ? -159.16 -32.34 15 3 GLU A 535 ? ? -43.34 157.25 16 3 THR A 538 ? ? -171.25 55.32 17 3 PRO A 539 ? ? -39.11 140.63 18 4 ASP A 468 ? ? -69.95 -171.43 19 4 TYR A 469 ? ? 58.29 155.50 20 4 PRO A 505 ? ? -33.99 145.07 21 4 PHE A 534 ? ? 48.59 97.61 22 4 GLU A 535 ? ? -42.02 160.68 23 4 ASN A 541 ? ? -164.79 95.60 24 5 ALA A 482 ? ? -29.94 -64.74 25 5 THR A 532 ? ? -167.95 -107.73 26 5 PRO A 539 ? ? -37.52 147.45 27 6 PRO A 505 ? ? -34.43 143.36 28 6 THR A 532 ? ? -100.14 -131.35 29 6 PHE A 534 ? ? -108.97 43.67 30 6 GLU A 535 ? ? 51.69 105.82 31 7 TYR A 469 ? ? 58.32 159.66 32 7 ALA A 482 ? ? -29.28 -65.24 33 7 PRO A 505 ? ? -34.15 146.91 34 7 THR A 532 ? ? -167.63 40.22 35 7 GLU A 533 ? ? 27.83 85.33 36 7 PRO A 539 ? ? -39.43 138.66 37 7 THR A 540 ? ? -70.78 -119.23 38 8 TYR A 469 ? ? 58.41 160.49 39 8 PRO A 505 ? ? -34.92 145.10 40 8 THR A 532 ? ? -134.76 -69.85 41 8 PHE A 534 ? ? 50.79 109.08 42 8 GLU A 535 ? ? -67.40 29.13 43 8 ASN A 536 ? ? -157.95 64.64 44 8 THR A 538 ? ? -152.99 74.57 45 9 ASP A 468 ? ? -77.94 -83.90 46 9 PRO A 505 ? ? -33.97 147.14 47 9 THR A 532 ? ? -146.11 -5.97 48 9 PHE A 534 ? ? -52.84 98.21 49 9 ASN A 536 ? ? 55.38 82.59 50 10 TYR A 469 ? ? -49.61 155.63 51 10 PRO A 505 ? ? -35.12 144.33 52 10 ALA A 530 ? ? -77.55 39.89 53 10 THR A 532 ? ? -147.38 -42.11 54 10 PHE A 534 ? ? 48.32 102.15 55 10 ASN A 536 ? ? 54.64 74.33 56 10 THR A 538 ? ? -167.97 56.28 57 10 PRO A 539 ? ? -39.99 136.53 58 11 PRO A 505 ? ? -35.18 147.98 59 11 THR A 532 ? ? -71.74 37.61 60 11 GLU A 533 ? ? 58.47 118.52 61 11 THR A 538 ? ? -142.14 51.07 62 12 PRO A 505 ? ? -33.41 144.62 63 12 THR A 532 ? ? -92.36 -88.13 64 12 GLU A 535 ? ? 41.30 -154.67 65 12 THR A 538 ? ? 38.59 66.95 66 13 ASP A 467 ? ? -75.40 -83.37 67 13 ASP A 468 ? ? -83.16 -84.95 68 13 THR A 532 ? ? -93.87 -71.06 69 13 GLU A 533 ? ? -141.67 29.71 70 13 THR A 538 ? ? -115.63 72.48 71 13 PRO A 539 ? ? -39.94 155.40 72 13 THR A 540 ? ? -69.07 35.01 73 14 THR A 532 ? ? -159.11 -37.23 74 14 PHE A 534 ? ? 53.63 165.88 75 14 ASN A 541 ? ? -157.99 80.77 76 15 PRO A 505 ? ? -33.50 146.03 77 15 THR A 532 ? ? -156.34 -107.14 78 15 ASP A 542 ? ? 48.27 25.00 79 16 PRO A 505 ? ? -34.09 143.85 80 16 GLU A 535 ? ? -72.98 24.00 81 16 ASN A 536 ? ? -156.82 49.29 82 16 VAL A 537 ? ? -93.47 -76.41 83 16 THR A 538 ? ? -166.36 65.96 84 17 PRO A 505 ? ? -33.05 145.41 85 17 THR A 532 ? ? -72.85 -95.84 86 17 THR A 538 ? ? -119.98 63.39 87 17 PRO A 539 ? ? -39.78 144.02 88 18 PRO A 505 ? ? -33.22 144.87 89 18 THR A 532 ? ? -165.61 53.45 90 18 GLU A 533 ? ? 46.90 98.51 91 18 ASN A 536 ? ? -161.79 65.57 92 18 ASN A 541 ? ? -159.37 67.82 93 19 TYR A 469 ? ? 59.79 155.90 94 19 PRO A 505 ? ? -34.95 143.76 95 19 GLU A 533 ? ? 47.52 12.40 96 19 PHE A 534 ? ? 38.14 91.24 97 19 THR A 538 ? ? 49.12 72.43 98 20 PRO A 505 ? ? -34.24 145.59 99 20 ALA A 530 ? ? -77.55 28.29 100 20 THR A 532 ? ? -166.25 55.02 101 20 GLU A 533 ? ? 48.91 10.02 102 20 PHE A 534 ? ? 35.39 91.49 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 492 ? ? 0.278 'SIDE CHAIN' 2 1 ARG A 520 ? ? 0.262 'SIDE CHAIN' 3 2 ARG A 492 ? ? 0.270 'SIDE CHAIN' 4 2 ARG A 520 ? ? 0.263 'SIDE CHAIN' 5 3 ARG A 492 ? ? 0.278 'SIDE CHAIN' 6 3 ARG A 520 ? ? 0.271 'SIDE CHAIN' 7 4 ARG A 492 ? ? 0.276 'SIDE CHAIN' 8 4 ARG A 520 ? ? 0.257 'SIDE CHAIN' 9 5 ARG A 492 ? ? 0.277 'SIDE CHAIN' 10 5 ARG A 520 ? ? 0.252 'SIDE CHAIN' 11 6 ARG A 492 ? ? 0.261 'SIDE CHAIN' 12 6 ARG A 520 ? ? 0.267 'SIDE CHAIN' 13 7 ARG A 492 ? ? 0.277 'SIDE CHAIN' 14 7 ARG A 520 ? ? 0.269 'SIDE CHAIN' 15 8 ARG A 492 ? ? 0.278 'SIDE CHAIN' 16 8 ARG A 520 ? ? 0.250 'SIDE CHAIN' 17 9 ARG A 492 ? ? 0.276 'SIDE CHAIN' 18 9 ARG A 520 ? ? 0.269 'SIDE CHAIN' 19 10 ARG A 492 ? ? 0.276 'SIDE CHAIN' 20 10 ARG A 520 ? ? 0.273 'SIDE CHAIN' 21 11 ARG A 492 ? ? 0.280 'SIDE CHAIN' 22 11 ARG A 520 ? ? 0.268 'SIDE CHAIN' 23 12 ARG A 492 ? ? 0.271 'SIDE CHAIN' 24 12 ARG A 520 ? ? 0.262 'SIDE CHAIN' 25 13 ARG A 492 ? ? 0.263 'SIDE CHAIN' 26 13 ARG A 520 ? ? 0.282 'SIDE CHAIN' 27 14 ARG A 492 ? ? 0.265 'SIDE CHAIN' 28 14 ARG A 520 ? ? 0.249 'SIDE CHAIN' 29 15 ARG A 492 ? ? 0.271 'SIDE CHAIN' 30 15 ARG A 520 ? ? 0.266 'SIDE CHAIN' 31 16 ARG A 492 ? ? 0.288 'SIDE CHAIN' 32 16 ARG A 520 ? ? 0.268 'SIDE CHAIN' 33 17 ARG A 492 ? ? 0.276 'SIDE CHAIN' 34 17 ARG A 520 ? ? 0.266 'SIDE CHAIN' 35 18 ARG A 492 ? ? 0.288 'SIDE CHAIN' 36 18 ARG A 520 ? ? 0.267 'SIDE CHAIN' 37 19 ARG A 492 ? ? 0.275 'SIDE CHAIN' 38 19 ARG A 520 ? ? 0.268 'SIDE CHAIN' 39 20 ARG A 492 ? ? 0.270 'SIDE CHAIN' 40 20 ARG A 520 ? ? 0.259 'SIDE CHAIN' #